mRNA_D-herbacea_F_contig1.114.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.114.1
Unique NamemRNA_D-herbacea_F_contig1.114.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:2870915..2874168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.741984-CDS-D-herbacea_F_contig1:2870914..28710991622927380.741984-CDS-D-herbacea_F_contig1:2870914..2871099Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2870915..2871099 -
1690790135.5187469-CDS-D-herbacea_F_contig1:2870914..28710991690790135.5187469-CDS-D-herbacea_F_contig1:2870914..2871099Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2870915..2871099 -
1622927380.7616875-CDS-D-herbacea_F_contig1:2874041..28741681622927380.7616875-CDS-D-herbacea_F_contig1:2874041..2874168Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2874042..2874168 -
1690790135.5296786-CDS-D-herbacea_F_contig1:2874041..28741681690790135.5296786-CDS-D-herbacea_F_contig1:2874041..2874168Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2874042..2874168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.114.1prot_D-herbacea_F_contig1.114.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 2870915..2874168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.114.1

>prot_D-herbacea_F_contig1.114.1 ID=prot_D-herbacea_F_contig1.114.1|Name=mRNA_D-herbacea_F_contig1.114.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=104bp
VLISLTCSLRVGWVLPACSPATGRAVCATMSQERLAKGVITTASPRTRTT
RLLAFALALPNWANGWTKSYPSLPAGFVVGPPRPQAGGTRVAPRRKAGGE
LEAG
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mRNA from alignment at D-herbacea_F_contig1:2870915..2874168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.114.1 ID=mRNA_D-herbacea_F_contig1.114.1|Name=mRNA_D-herbacea_F_contig1.114.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3254bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2870915..2874168- (Desmarestia herbacea DmunF female)
GTCCTCATCTCACTGACCTGTAGCTTGCGTGTGGGGTGGGTCTTACCTGC
GTGTTCTCCTGCTACTGGTAGGGCTGTTTGTGCTACGATGTCTCAAGAGC
GCTTGGCGAAAGGCGTCATCACTACTGGTGAGGCAACCAAACAAAAAAAC
ATGACAGTCCCTTGCCTCTCTCGCTCACAGAGCAGAGGGTGAGCTGGCTG
TACCAACCACACACGCAACAGTCGGCACGGTGGTGCAGCGATCTAAACCG
CCCCGCACTAGTGCGCTACTACTGTCTATGCGCCACGAGAACACAGCGAG
TGTTCACTATGTTTTCAACTTGATGTCCTTATCGGGCTGCCATAGGAGAC
GCTGTTGCTGTCCGAACGGTGCCACTGCTGCCTCGTCCGCACCGCACGTA
CGGTTGTATTCAATTTTGAGGTGCTACGTGACGATACTTATCATGTGGTA
TTGCCGTAGAGCCTATAGGTGCATCGTGGGTAGGCTGGCCGTATTGCTCA
GTGGTAGCGTTTCATGGGACACGTGCAAGGTTGTACTTGCTGGTTGGTGC
GCTGTTCGCGTCGCCATCGCACCACAACAGTAGTAGTACAGTGGAAAATT
GAACTGCCTTCTTGAAGACTTTTGTGGTTGCGCCGCATTTCCTGCCCTCA
CACAACTTCAAACTTGAGCGACGAAGTATGAAGTATCACAGTCAGTGAAG
TTGACGATTATCCCCTGGCCCCCCGAACCAATTTGGAACGTCACGGCTGA
TGCGTTTGTAATAAAAAATAATGACAACTTCAAACTTCATCTGTGATGTG
AGCTTCGTGCATTGATTCAATAAAAGGAACAGGTGTTGCGTAGTGTAGTG
TGTAGTGCCCAGATTTCGCATATGGATGACAGCCATCTAGGATAATTTCC
GTGGGACTTCGTCGCAGGGCGAGCTGCTTGGTGCCTACGCTGCGGTGGAT
ATGTGGCTGGAACTTCTACAGCAGCTGGTGTTTTATAGTATTGATATATT
TTTACTGTATTCGTACAGTACAGTAGTTGTTGTTGTTTTTGTTGTCTTCA
CATTAAAAATCGTCCTTCCTACCCTACCATACGACATCCAGCATCGTACT
CAGAGTCTGTACTGATTCTTCCATCCTAGAGACATAAGACATTCCGTGGT
AACAAGCATGTACATCACAACACCAAATCGCAAATTGAACAAAAAAACGG
GGGAAAACAACAAAAGGCAGAAAATAAAAAGCAAGGAAATAAAGCAGGCA
GGAACGCAAGGAACCTAAGGAGACCGAACGAAAAGAAAACAACCAGATAG
AATAGATAGAATCGAGGGACACAAGGACAACAAAAAAAGGGAACCCAAGC
AAGCAAGGAAATAGGACGAGAGCTATCGCCGCGTTCCCCCCCCCCCCCTT
CCAGTTGCTGCTATAATACTTAGGGCTTCTCAGCTGGTACAGACTTGAAA
AACAACTGTACTGTATTAGAAAAACATGGCGAAAAGCGCAAGAGCGCGAG
GAAGCAAAAAATCGATGAGAGTCGACGAGCGAAGGGAATACCGAACCCTG
TACGCGATAAAAACCTAACAGTTAGGCATGATAAAGGTACTGTTAGGCAT
GATAAACCTGCTGTTAGGCATGATAAACTACTGTTAGGTATGATAAAGGT
ACTGTTAGGCCTGATAAAGGTACTGTTAGGCATGATAAAGGTACTGTTAG
GCCTGATAAAGGTACTGTTAGGCATGTACATGGGGGAGAAAAGGGTAGAC
ACCTGTGACCTCGTCTTGCTCAGATAGGCGCGCTAATCGATGAACAGAAG
AGCTCCTGTGAGCTGGACTGGGAAGTGGAAGCAGTGGATTGGGAAACACG
CACACACACACACACGTATCAGCTCACACGCGCGTGATGTTCCAAACCAA
ACTGGTTCGCGGGCCAGGGGATACGATGTCACAGGTGTCGAACCCCCCCC
CCCCGGTACATGCATCGGTTTTTGTCGCAATCAGGATTCGGCATTCCTAT
AGTTCGTCAACTTTCATCGAAGTGTGTTTACTCGCGCTCTCGCGCTTTCC
GCTAGGGAAAGTACCATTTTGTTTTCAACGAGAATCGAACCCCGAACTTC
CGCCAACAGGGGGCGACAATCTAACCTCTCAGACCACCGCGTTACACCGT
ACGACCTGTTATTTTAATTTTCAACGTTCACACACGTAGTATCATCAGTT
CGATGAAAGTCGAGGAGGGAAGAAAGTGCTGCACTCTTGTCGCGATAAAT
ATGTAGACGCGTACCGTAGTGGGAAGGCGGGAGGAGCGCCTACTATGTGA
CCCCGGATCTGAGCTACGAACAGAGAAGGAGCTAGAGAAAGAGTACGAGT
ACCAGTAGAGGGAAGAAAATAAATGGGACGGAAAAAAAAAAAAAAAAATG
GCCGTGACGTTCCAATCTGGTTCGACGCCAGGGGATAGTCCCCAACTTCC
AACATCACTGTGTGATGCATCGGTCACACGTATGCCACCCGTCCTCTCAG
ATAAGGTGTAGCACGGTAACTGTCCCCTCCCTTGGGTAGTAAGCCCTGCA
GGCTCGACAGAATAAGGGTAATTTTGGGCCTCATCATATTGTGTACTAAA
ACTACACCATTGGTACGTAGCGTTTATGATGGGGGGCGCTGTCAGGTTAT
CGTACAAAGGTACTGACTGTTAGACACGTCAAGATTTCCACGCGCATTCG
TATATGACGGGGCTTTTACCTTGGTCGGCAGAAATTTCGTGGAATTTGTG
AAAACTGAAAGCTGAAAGCTGCCTGCCTATCCGCCATTCCCTCGTGTACT
CGTATCACATACCATACTAAGAGATAGGTGGTGGCCACAAAAGGCGAAAC
AGGAATGGGGTAAAGGTATGCAAATCGTTTGTATACAAGATATGGCGAAA
ACGTCAAAGAGCCCCCAAACAATGGTTGAATGTTGGAGGTGTCTCTATTG
GAGGAGTAGGAACGGTGCTCCATCTCGAAAGGGATATGCGTGACCAATGA
TCAATTGACTTAAGAGACAAGCGACATATGAGTACGCCCCCCCCCTCCCC
TCTCCCCGGGCGCGCACAGCCTCCCCAAGAACGAGAACGACACGGTTGCT
CGCGTTCGCGCTCGCCCTCCCTAACTGGGCTAACGGCTGGACAAAATCGT
ATCCATCTCTACCCGCCGGATTTGTCGTGGGTCCGCCCCGCCCACAAGCC
GGTGGGACACGCGTGGCTCCCCGGCGGAAGGCTGGGGGCGAGCTAGAAGC
GGGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:2870915..2874168-

>mRNA_D-herbacea_F_contig1.114.1 ID=mRNA_D-herbacea_F_contig1.114.1|Name=mRNA_D-herbacea_F_contig1.114.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=624bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2870915..2874168- (Desmarestia herbacea DmunF female)
GTCCTCATCTCACTGACCTGTAGCTTGCGTGTGGGGTGGGTCTTACCTGC
GTGTTCTCCTGCTACTGGTAGGGCTGTTTGTGCTACGATGTCTCAAGAGC
GCTTGGCGAAAGGCGTCATCACTACTGGTCCTCATCTCACTGACCTGTAG
CTTGCGTGTGGGGTGGGTCTTACCTGCGTGTTCTCCTGCTACTGGTAGGG
CTGTTTGTGCTACGATGTCTCAAGAGCGCTTGGCGAAAGGCGTCATCACT
ACTGCCTCCCCAAGAACGAGAACGACACGGTTGCTCGCGTTCGCGCTCGC
CCTCCCTAACTGGGCTAACGGCTGGACAAAATCGTATCCATCTCTACCCG
CCGGATTTGTCGTGGGTCCGCCCCGCCCACAAGCCGGTGGGACACGCGTG
GCTCCCCGGCGGAAGGCTGGGGGCGAGCTAGAAGCGGGCCCTCCCCAAGA
ACGAGAACGACACGGTTGCTCGCGTTCGCGCTCGCCCTCCCTAACTGGGC
TAACGGCTGGACAAAATCGTATCCATCTCTACCCGCCGGATTTGTCGTGG
GTCCGCCCCGCCCACAAGCCGGTGGGACACGCGTGGCTCCCCGGCGGAAG
GCTGGGGGCGAGCTAGAAGCGGGC
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