mRNA_D-herbacea_F_contig1.113.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.113.1
Unique NamemRNA_D-herbacea_F_contig1.113.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig1.113.1 vs. uniprot
Match: D7FUA9_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUA9_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 5.840e-91
Identity = 144/201 (71.64%), Postives = 171/201 (85.07%), Query Frame = 1 
Query:  100 GGSGETEYYSWTETDADMEVRVSLPPGTPSKAVQLSVTRSSLTLGLRGRESPILKGTLLGEVQADMSHWTMEEMDDTGAKVLYLCLEKVVGDED------SEDWEGVLEGEEALNVWYANKDKAFDVNEYVKKMGYDRERDLDKVDKTMFSDLTSEMRQNLETNLPKTSFTEKDDMIPVVAEPKVSPIIDAGVLGVRPPNP 684
            GG+G+TEYYSWTETD+DMEVRV LPPGT +K+VQLSVT++SLTLGL+GRE P+LKG+L G+V AD SHWTMEEM+DTG KVLYLCLEKV   E        +DW GVLEGEE LNV+Y +KDK FDV EYVK+MGYDRERD+ KVDK MFSDLT+EM++NL+T LPK+SFT+KDDMIPV+A+PKVSP+ID GVLG+  P P
Sbjct:  206 GGTGDTEYYSWTETDSDMEVRVPLPPGTAAKSVQLSVTKTSLTLGLKGREGPVLKGSLKGQVHADESHWTMEEMEDTGEKVLYLCLEKVADMEALAANSMPQDWVGVLEGEEPLNVYYPDKDKDFDVGEYVKRMGYDRERDIGKVDKAMFSDLTAEMKENLQTTLPKSSFTDKDDMIPVMADPKVSPVIDTGVLGLPTPPP 406
[Close]
BLAST of mRNA_D-herbacea_F_contig1.113.1 vs. uniprot
Match: A0A0G4I482_9ALVE (CS domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I482_9ALVE)

HSP 1 Score: 68.6 bits (166), Expect = 4.210e-9
Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 1 
Query:   88 VVVDGGSGETEYYSWTETDADMEVRVSLPPGTPSKAVQLSVTRSSLTLGLRGRESPILKGTLLGEVQADMSHWTMEEMDDTGAKVLYLCLEKVVGDEDSE-DWEGVLEGEEALNVWY 435
            V+V  G G TEYYSW ETD++M++RV LP  T    +   + +  + + L+  E PI++G   G ++   S W++    +      +L L   +   DS  +W GV+EG++ +++ Y
Sbjct:  103 VLVARGFGCTEYYSWKETDSEMDIRVKLPQETNVDNIVCDIGKDWIYVRLKTAEEPIIRGQSKGLIRVHDSFWSVSREPE------FLMLNMRLQKRDSRVEWGGVIEGDQPMSIAY 213
[Close]
BLAST of mRNA_D-herbacea_F_contig1.113.1 vs. uniprot
Match: A0A5N6NFZ7_9ASTR (CS domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFZ7_9ASTR)

HSP 1 Score: 58.5 bits (140), Expect = 1.800e-6
Identity = 34/119 (28.57%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:   73 ERGSPVVVDGGSGETEYYSWTETDADMEVRVSLPPGTPSKAVQLSVTRSSLTLGLRGRESPILKGTLLGEVQADMSHWTMEEMDDTGAKVLYLCLEKVVGDEDSEDWEGVLEGEEALNV 429
            ++G  V   G   + + YSW ++  ++ V +S+PPGT S+ V   + ++ L +GL+G + PIL+G L   V+ D S W +E+ +      + + L K    +  E W+ +++GE  ++ 
Sbjct:   46 KKGLRVPNKGNGLDMDNYSWVQSLQEVNVTISVPPGTKSRFVACEIKKNHLKVGLKG-QPPILEGELYKAVKVDDSFWCLEDQN-----AITVLLTK---QDQMEWWKYLVKGEPEIDT 155
[Close]
BLAST of mRNA_D-herbacea_F_contig1.113.1 vs. uniprot
Match: A0A4S2N7K8_9PEZI (CS-domain-containing protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N7K8_9PEZI)

HSP 1 Score: 53.5 bits (127), Expect = 5.190e-5
Identity = 26/80 (32.50%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:  124 YSWTETDADMEVRVSLPPGTPSKAVQLSVTRSSLTLGLRGRESPILKGTLLGEVQADMSHWTMEEMDDTGAKVLYLCLEK 363
            YSW +T +D++V + +P GT  + + +S+ R+++++GL+G+E PI+ G+L   +  D S W++ +       V+ L +EK
Sbjct:   19 YSWKQTLSDVDVSIPVPAGTRGRDLSVSIERTTISVGLKGKE-PIISGSLPHPIVPDDSTWSLSD------NVVELHIEK 91
[Close]
BLAST of mRNA_D-herbacea_F_contig1.113.1 vs. uniprot
Match: A0A437A0B0_9PEZI (CS domain-containing protein n=1 Tax=Arthrobotrys flagrans TaxID=97331 RepID=A0A437A0B0_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 8.510e-5
Identity = 24/65 (36.92%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  124 YSWTETDADMEVRVSLPPGTPSKAVQLSVTRSSLTLGLRGRESPILKGTLLGEVQADMSHWTMEE 318
            Y WT+T  +++V VSLPPGT  + + + +  +SL + L+G+E P+ +GTL   +  D S W++ +
Sbjct:   31 YKWTQTLEEVDVTVSLPPGTRGRDLIVDIKLTSLKVALKGKE-PLFEGTLYKPIHLDDSTWSISD 94
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FUA9_ECTSI5.840e-9171.64CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A0G4I482_9ALVE4.210e-931.62CS domain-containing protein n=1 Tax=Chromera veli... [more]
A0A5N6NFZ7_9ASTR1.800e-628.57CS domain-containing protein n=1 Tax=Mikania micra... [more]
A0A4S2N7K8_9PEZI5.190e-532.50CS-domain-containing protein n=1 Tax=Ascodesmis ni... [more]
A0A437A0B0_9PEZI8.510e-536.92CS domain-containing protein n=1 Tax=Arthrobotrys ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:2860359..2870890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.5
Seed ortholog evalue1.2e-76
Seed eggNOG ortholog2880.D7FUA9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size932
Cds size930
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927396.9670472-CDS-D-herbacea_F_contig1:2860359..28606561622927396.9670472-CDS-D-herbacea_F_contig1:2860359..2860656Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2860360..2860656 -
1690790146.9641576-CDS-D-herbacea_F_contig1:2860359..28606561690790146.9641576-CDS-D-herbacea_F_contig1:2860359..2860656Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2860360..2860656 -
1622927396.975651-CDS-D-herbacea_F_contig1:2863629..28637491622927396.975651-CDS-D-herbacea_F_contig1:2863629..2863749Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2863630..2863749 -
1690790146.972918-CDS-D-herbacea_F_contig1:2863629..28637491690790146.972918-CDS-D-herbacea_F_contig1:2863629..2863749Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2863630..2863749 -
1622927396.9878485-CDS-D-herbacea_F_contig1:2865866..28659291622927396.9878485-CDS-D-herbacea_F_contig1:2865866..2865929Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2865867..2865929 -
1690790146.9827495-CDS-D-herbacea_F_contig1:2865866..28659291690790146.9827495-CDS-D-herbacea_F_contig1:2865866..2865929Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2865867..2865929 -
1622927396.999622-CDS-D-herbacea_F_contig1:2867322..28674591622927396.999622-CDS-D-herbacea_F_contig1:2867322..2867459Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2867323..2867459 -
1690790146.9900115-CDS-D-herbacea_F_contig1:2867322..28674591690790146.9900115-CDS-D-herbacea_F_contig1:2867322..2867459Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2867323..2867459 -
1622927397.0121515-CDS-D-herbacea_F_contig1:2868956..28690051622927397.0121515-CDS-D-herbacea_F_contig1:2868956..2869005Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2868957..2869005 -
1690790146.9983933-CDS-D-herbacea_F_contig1:2868956..28690051690790146.9983933-CDS-D-herbacea_F_contig1:2868956..2869005Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2868957..2869005 -
1622927397.0270092-CDS-D-herbacea_F_contig1:2869664..28697971622927397.0270092-CDS-D-herbacea_F_contig1:2869664..2869797Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2869665..2869797 -
1690790147.006176-CDS-D-herbacea_F_contig1:2869664..28697971690790147.006176-CDS-D-herbacea_F_contig1:2869664..2869797Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2869665..2869797 -
1622927397.0401137-CDS-D-herbacea_F_contig1:2870759..28708901622927397.0401137-CDS-D-herbacea_F_contig1:2870759..2870890Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2870760..2870890 -
1690790147.0132577-CDS-D-herbacea_F_contig1:2870759..28708901690790147.0132577-CDS-D-herbacea_F_contig1:2870759..2870890Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2870760..2870890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.113.1prot_D-herbacea_F_contig1.113.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 2860360..2870890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.113.1

>prot_D-herbacea_F_contig1.113.1 ID=prot_D-herbacea_F_contig1.113.1|Name=mRNA_D-herbacea_F_contig1.113.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=310bp
GKLSGAWWGQTRFRRRQRPWRRGRERGSPVVVDGGSGETEYYSWTETDAD
MEVRVSLPPGTPSKAVQLSVTRSSLTLGLRGRESPILKGTLLGEVQADMS
HWTMEEMDDTGAKVLYLCLEKVVGDEDSEDWEGVLEGEEALNVWYANKDK
AFDVNEYVKKMGYDRERDLDKVDKTMFSDLTSEMRQNLETNLPKTSFTEK
DDMIPVVAEPKVSPIIDAGVLGVRPPNPSTAPPPSTTTTPRPEPVVGMAG
AAAEAEVVSEDDVSTRWAAEGATDGTAGDSYSPAFEASSDALDGVGGLSA
AAVSSTGELT
back to top

mRNA from alignment at D-herbacea_F_contig1:2860359..2870890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.113.1 ID=mRNA_D-herbacea_F_contig1.113.1|Name=mRNA_D-herbacea_F_contig1.113.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=10532bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2860359..2870890- (Desmarestia herbacea DmunF female)
GGAAAGTTGTCGGGGGCGTGGTGGGGTCAGACGCGATTTCGGCGACGACA
GCGACCGTGGAGGCGAGGGAGGGAAAGGGGCTCCCCAGTGGTGGTGGATG
GGGGTTCCGGTGAAACGGAGTACTACTCCTGGTGAGAGCGTCGTTATTTT
CATGGCTGGGGGAGAGGGTCGTCGTCGTCTTATTATTATTTCAACTGCTT
GTATTTACGTTAGGTTGTGGGATCTTTACGGTGGGATGGTCGTTTTATTA
TACTAATTTATTAATATAGTAGCGTTATGTTAGTGGCCTATGGCGTGCTG
ACTAACACTCTACCATCACGTGAAGCTATTCTGCGAATAGCGTCATACTC
TTAACATAACGTTACGACGGTGTCTTGAGATCCCGTAACATAATAACTTT
CTGTTAGTACTCACACCCGCTGAGCCTTAACATCACGAACAAATGTTAAT
GTAATGTTATCCGAGGTGTGGTCGGTTTACAAGGGCGCCTACAGGGCGGC
AAACTGCCCGGCAGACTCCTGAGTTGGCAGGAGTTAAGGGCGTGAGTATC
GGTGTAGTACTACAATGGTTTAGATGGATATTCCGCTATTTTTCGTAGAC
TTTACAACGTGTTTGGGGGCTGCTTTTTATTTTTTGACTTGGTTTTACTA
TATGGTGTGATCATCAGGGTTAGGGTTAGCTCTAGAAAATGTGCCGAGAC
GCTGAACAGTCCCGCATTGGTATACTATTATTAGTATAATACAACGAGCA
TCCTACAGATCCCCGAACAAGTTAGTTGTAAAGCATTCCTTTACTATACT
TGATATTGGGGACGGGGGGGTACAGAAAAGTTCTAGAAAATTCTGAAGCT
AACCTTAACCCTATCTCAAATGACCCCCCTATACCATTCATCATAGTGAG
TTATGACATCAGCGCGACAACATTCAATATTCCGCCGCATATGCTTTAAG
TAAGAAGAAAATTAACGTTGTTCAATATTCCAAGAAAGCGCTATCGTGTT
GTTGATTCTCGCATTAGCTCATCGCTAAAAATCTAGCCCGTGGTCACAAA
TATCTGAAGAGTGCTGATGTTTTTCTGCGCGCATGTCATGCAGGACCGAG
ACAGATGCGGACATGGAGGTGCGCGTGTCGTTGCCTCCGGGTACACCTTC
GAAGGCGGTACAGCTGAGCGTAACCAGGTCGTCGCTCACGCTGGGGCTTA
GGGGGCGGGAGTCGCCCATCTTGAAGGCAAGCAAAAAAAACTCAACGCTT
CTGTCTGTTGTCGTCGTCGTCGTTGTTGCTGTTGGTGCCGTGCGGTGCGG
TGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGG
TGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTACGG
TACGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGG
TACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGG
TACGGTGCGGTACTACTCACCCCTTGAAACGCACACTCGACGGGCAACGC
TGTGGCGGCCTGCTGTTTTAAAAATAAGCACGTACGTCGGGGTCACGCTT
TGTCGGATGTGCGTAGCTTGTTGTTGGTACGGGACGGTACTGCACCTCAC
CATATTACCTGGGCAATATTGTGTCCTGCAACATAGTTAAGTTGGCACAA
ATACACCGCTTGATGTTTGTGCCCATCTGCCGGAGGATAGAAGCAAGCAA
ACAAAAACAACAAAAACTATTTTGCAAAATGAAACACTTTTACAAAAAAA
AAATATATATATATATATATGTGTTTTTATGTTCATTGTTTTGCGGCCGC
GTGTTTTTTCGTTTCTCGCGCCTGTTAAAAAACAGGGAACTCTCTTGGGG
GAGGTGCAGGCGGACATGAGCCACTGGACCATGGGTGAGTTCGTTGTTCG
GGGGGGTTGGTTTTATCTTTTTTTTTACTTGCTGTTAGTATGGTGTGGTC
GCTGGGTTAGCGTTAGGGTGAGTTCTAGAAAATGTCCCGAACTACTGAAC
AGCCCATGTTGGTAGTGTTAGTATGGTAAAACGACTTTCCCAAGATCCCC
CAGAGCAACGTGTAAAATAGGCTCTCCATTTTTATTTTTATTTAGTGCTT
ATTACGGTGTACTTCGTATTCGTTGTTGTTGTTGTTGTTGTTATTGTTGT
TGTTCTCTCAGTAGCTCATGGCCTTACTCTAGCCCATGATCGTTTAGGAA
GGAACGGGGAAAATTAAAATGTATCACTTGGGGGAAAGCGGACCGACATG
TTTGCTACATATTTACAACGATGACACCTTAAATCAACAAAAAGCACGGG
GGGGGCAGCAAGCAATATATGTTTTGGAGGCCCGAGAACGCTGTTAATGG
CCTGTACACGACGGTGTAAAAAAATCCTACTTCCTCTCTCACGTGTTTTT
TTTAGTTTGCCGAGTAACGCCACGCCAGAAAAAGTGATCAGGTCCAGGAG
ACAAGTGGGGCAAGCGGAAGTAATCGAAAGGCTGGGGCTGACTCCATGAA
CAACTCGAGAGAAATTTCTCGGAAATAGAGGCAGTTAAACCTCGTATTAC
GTGGACAATCTACTTTCTCCGACAGTTCCCTACTCGTACAGAACCCAGAG
AAGGGTCTCGAACCAAAGGAATTCCCGATGCATAACTATAGACGAAATGG
CCTCGGGCGACCTGTAGTCCAATTTTTATTTTTATGTTTTTGCGCGGTGT
TTGAGTAACAGATTCCCATGTGTTGTGAAGTAGCAGCGATATTTCGAGAG
GTGTCTACTCCCTATTACTATCGGGTGTGGGTTTGGCTACGGTTAGGGTA
GGAATTTTTCTAGCTGCCTGCGTACCCCACGTTTCGTATTTATTGAAGTA
CCGTATATAGTAAACGATACCCCGTACAGATCCCGTCTATCCTTTTATAT
AGTCCGACCTCGCTGGTTTTTTTTGGTGATTTGGGCACACAGAGGAGATT
ATAGTATTTGTTTTCGCCGGGAATCGACCCCCGAACTTCCGCCAAGAGAG
CAAACAGGGGGCGACAATCTAACCAATCAGATCATAGCGTCATACTATCA
TGGTGGCCCCTAATAAATAGGCCCGAAAAAGGGTGAAGGCGGGAGGAGGT
CTACCCTTACCCTTCCCCCAATTGTTTCCTGAATATTACAAGTATAGCAT
CGATGGAAAGCCTGTGATCAACCGCGTTGTTTAAACGATTTCCGGATCCG
GGATTAACGCAGTGGCAGTTCTTAAGATCCAGGCGCCAACGTGGGTGTTA
GGGCTTTATTGTGGGCTATTTATTAGGGGCCACCGTGATACTTAATTTTA
ATGAACGATACCCCCCAAAGGTCCCGTCGATCCTTTTGCTATCCGACCTC
ATTTTTTTTTTTTTTAATGATTTGGGCACAGAGGAGATGGACGATACGGG
CGCCAAGGTGCTGTACCTCTGCCTTGAGAAGGTCGTTGGTGATGAGGACA
GCGAGGATTGGGAAGGGGTGCTGGAGGGGGAGGAGGCACTGAACGTTTGG
TACGCCAACAAGGATAAGGTGAGACGTAGTTTGGTATTCCAACACTCCCA
ACAAAAGATAAATGTGAAACATCGTTTGTTACTCCAACAAAGATGACGCG
AGGTGTCCACTGGTACTCCGATAAACATAAGGTGAGCCGTAGTTTGGTGC
TCATCCAATAAAGATAAAGTGAGACGTAAGGTTGGTACTCCAACACAGAT
GGTGTGAGACGTCGTTTGGTACTCTTAACAAAGATAAGGTGAGACCTAGT
TTTTGGTATTCCAACACAGATAGGTGAGACGTTGCTTGGTACTCCAACAA
GGATAAAGTGAGATGTAGGTTGGTACTCCAACAAAGATAAGGTGAGGCGT
TTTTTGGTACTCCAACAAAGGTGAGGTGAGGTGTCAATTGGTACTCCAAC
AAACAGAAGGTGAGACGTAGTTTGTAGGTCCAACAAAGATAAGGTGAGAC
GTAGGTTGGTACTCCAACGAAGATAAGGTGAGACGTAGGGTGGTACTCCA
ACAATAATAAGGTGAGATGTCGATTTGTTCTCCAACAGGGATAAGGTGAG
ACGTAGTTTGGGACGCCAAGAAAGATACGGGGAGATGTCGTTTGGTACTC
CAACAAAGATAAGGTGAGACGTAGTTTGCTACTCAAACAAAGAATAAGGT
TAGACGTAGGTTGGTACTCCAACACGGATAAGGTGAGACGTAGTTTGGTA
CCAACAATGATAAGGTAAGAAAAAAAAAAGATAAATGGGATAAGGTGAGA
CGCACGTTGGTACTCCAACAAAGATAAAGTTGGATACTTTCTTGTAGGCA
TTATGGAAGTGTGCCGAGACAAGCAAGTTTGTTGGAATAGCTCCCTCGTT
TGGAAAAAAAAAACTGTTTTGGATTTCCCACCCTTCATTCGTGCTGCCGA
CAGTTTCTGTTGGTACTCGTGGCACTACTACTGCATCTTTTATGTCAGGT
CCGTTGAACAAGACCGCGAAATGCCGCCTTGATGAACGTGTCTGAGCCTC
TGACTGTTGTTCTGTCAGGTCCTCCATAAATAAGACCACGATAAACTGAC
TTCAGTATTGAACGTCGCCCTCCTGTTAGTTTCAAGCGCGGTGGGAGATG
AGACAGATTGGCAGCGCGAATGTTATCATTAACCGGCGCGAGCGGAAGCG
CGTGCATGAGGGGACGGAAGAGGCTCCCACCAATAAGCCTATAACGGCGT
CAACCCAAAATTACGACTACTGAATGTACTATTGTGTCGGAGCATGTGAT
TGGTGGCCGGCTCGTGCGAGCCGTATGTGCGTAATACCTATGGTGTCGTA
GTTGCGTGTTAACATTCAGGTATGAACCGGCGAGAAAGAAAGGCGTCTGA
CAACTTGTGGCTTTAAGTTCGTACCTAATTATTTTGTTTCCTATGTTGCG
ACTGTTGTCAGGCGTTCGACGTGAACGAGTACGTAAAGAAGATGGGATAC
GACAGGGAGCGGGACCTCGACAAAGTGAGTGGACGCTGTTGTCTATTGCT
GTTGTCGTCGTTACTGTTTTTTCTAATTTTTATTTGTTCATACTTTTACT
TACCAGTCCAGCTCTCAAAGCCCTTCAACTCATCGCTCGGCGTGCCTAAC
TGTACCTGTCTAAGCAACCCGTGGTCACAGGTGTCTTCCCTTCTCCCCCC
CAGTACCTTTATCATGCCTAACAGTACCTTTATCATGCCTAACAATACCT
TTATCATGCCTAACCTGTCTGTCTAAGCAACCCGTGATCACAGGTGTCCT
CCCTTCTCCCCCCCGGTGCATGCCTAACAGTACCTTTATCATGCCTAACC
TGTCTGTCTAAGCAACCCGTGATCACAGGTGTCCCCCCTTCTCCCCCCCG
GTGCATGCCTAACAGTACCTTTATCATGCCTAACAGTACATTTGTCATGC
CTAACAGTACCTTTATCATGCCTAACAGTAGGTTTTTATCGCGCACAGGG
TTCGGCATTCATTCCCTTATCTCGTCGACTTTCATCAAACTGGGCTTACT
CGCGCTCTCGCGCATTCCGCCATGGGAGATAGCATAGAAAACTCCCATTC
TGTTTTCACCGGGAATCGAACCCCGAACTTTCTACAATGGTTGACAATAG
AACCGACAATCTAACCACTTAGGCTAGCTACACCCTCACCCTTGTATATG
AACAAACTAAAAAAACGAAAAAGACAAGAAATAAAAAAGAATACACGCTG
AAGTATGGTAGGCCGTTTCTAAAGCAGTACTTGTAGAATCTGACGTGTTC
GAGCCTCCATTTTGAGCGTGGGAATAAACGTACCTTCCTTATGCAGTTGA
AAATGGGCCGTTTTGAACAATTCTCGTTTTGAACAATCGTGCAGATTCTG
CAGGCTGGTTCAGACAAGGCGTACGAAGCCGCTTTAACTTACGTTTCTCA
TTCCTGTGTTAACGAGATAGCCCACGAAAATTTTTCACAAAGGTTCGCAA
GACAACGGCCGAAAATAGTTCGGGATGTTTTTTTTTTGTTTGGCCATTTT
CAACCGACTAGGCGGGGACCTATCATTGTTTTTTTAGGGGTTGTGGGCGA
TCTAGGACCCCGCCTAGCCGATTGGGAAAGGCCAGACAAAAAAAACTCCA
CTCCAAACTATTTTCGGCAGGCGTCTTGCGAACCTTTGTGAAAAAGTTTC
GTGAGTTATTTCGCAACACAGGAATGAGAAATGTACGGTCTCTGAAGTCC
ACCTAGGAATGAATCGTATGCACGATAATTGCTGAGTTTCAGTATGGCAC
CGCCATTCATGCTGTTTATAACACCAATATTGATACTGCGGCTCGAGGTG
TTCAATAATGTCAACAAAAATGCGGTGAAATGTTTATGTGTACGGAGGAA
GATCTTTGCAGAGTAAGAAACTCATCCGACCCCATTGGACTGGATTTTTG
GGGTCTTGGAGATGCGTAGGTGTTTTGCGTCTCTCGGACCTCATGAATCC
GGTAAAATGGCGTTCATGATTACGGTCTGGTAGCTAACAGTTTTTTGCGT
AACTCAGCGCCAGAGTGCAAAGTGTATTACTACTACTGTACCATGCGTGA
AAGCAATCCTCGAATAATTCACAAACGCAGCTCAATAAAAAAATCATTCG
TCCCCTGATTGTTTCTTCATAAATGCCTCATTATTATCGAAATAAAATGT
AGGTATAAACAGGTTTGGTCCCCTATCGTCCCCTCACAGCCCTGCACCCA
ACATTGAGAGAAGACAATGTCTTCTACTACTGCTGACGATCACCCAGATA
CCTCATTTGTCGTATTTGGTTCAGAACTTCAGATGAAATATGTTTTTGAA
AAAAAAAATGCTTTTTTCCTGAAGCAGCTTGTGCTGCTTAAGAAACAGCC
TAAGAAGGGGGGGGGGTGATGTTAGGACGTGTATAGCCCAGAGCCATATT
ATGTGCGTCTCTTTGATTTGTTTTTCGTGGGGTGTTGTTGAACAGGTAGT
CCCGGGGAGCGGCGGAATATCGGCCAATCAGATGCAAAGCCATCGGGTGG
GTTGGTTGGAAGCTGCCATTCTTGTTGTTTTTTCTATGCCGTCTAGTTTC
CACCTTCCCCATCTTGAAGAAACACGCCTCCGCCACGACAGGTAGACAAG
ACCATGTTCTCCGACTTGACCTCGGAGATGAGGCAGAACCTGGAGACTAA
CCTTCCCAAAACGAGCTTCACGGAGAAGGACGACATGATCCCAGTCGTTG
CGGAACCAAAGGTGATGGAGGAAAACGGTGTGGGAATAAATGTGAATTAT
GGAGCCCCCTTCACACACCTAACAGTTATCGACGGATCTTTAGGAGGTTC
GTTTTATTATACTAATATTATAGTACCAACGTGGACTGCTCAGCAGCCGT
TCGGAAGACTGTTTCTTTCCCGAGAACTATCATAGACCCTAACCATGACC
TAGCGACCACACTTAGTAACAGGTTTAGAGTACCAAAAACCTCCCCCAAG
ACAATGCTGATAGGTGTGCTATTACTGCCGGAATAATGTGACTGTGAAAT
GTGACGTGTTTGCGCGTCACTCCGGCGTCCATATATGTCCCATTTTGGCA
TGCCAGCAGGTTCGTTCATCATCTGCCATGGGTGCTTTGGGATTTTCGGG
TACATAGGCCGCCAAACGTTTCGGGCTGTGAACTGGTGCCAGCTTAAACC
AGCCCGTTTTTAAACCAATCCGGTCTTAAACTGGTTTTGGGTGGCCATTT
TTTGGACTGAACTAAAACCTCCACACTCACCTTAACCGGCAGGCAACCAG
TTTTCCAGATATATTGGTGTTTTTCTCGTCCCTGCATAAAAATAAAGTCT
GTACGAGGAAGTCTCCACGTGGAGGCTGTCATACCTTGTCAGAACCCCCC
CCCCCCTTAACTTTGAACTTTCGCTCGTCACGCAAGAGCTGTACCTTTAG
TCCCGCTGATGACGCAACTGCCAGTTTTCACCAGCAGAGAGGGTTTGTCT
TACCACTTGTTTTCAAAAACATGGTTGCTGTACACTGCGTATCTGCGTAT
ATACTGGATAATAGCAAAGCGGGCTGACTCTACCGCTAACCCTGACCCTG
ACATAGTTATCACATTAGATAGCTTTGTCTCGTACGCTGTGTGTATCAAC
CATTTGTTTCGAATAAGTGGTGAGCACTACTGCTGCCAGCTGGAGAAGTT
AGACCAATCAAGTCACAGCACTGAAAATGCGACCAATCAACTCACAGCGC
CTGAAAAGGTTTCACATTCAGCGGGCGTGACCATGCCATACTCTGGCAAT
ATACCTCGAGGAACCTCCCCTATCTGATTGCGAGCACCCTACTAGGTCGT
TAGGGGCCATTGACCACACGTTCCCGGAGCACCATCGGCCGTCCAGAGCT
ATTGCAAGAATCCGCCTTTACACACCTGTCGACGTTTTACTGTACTAACA
GTATCAACGTGGGGCTCTCAGCAGTTCGGAACAATTTTCTAGGATTAGCC
CTACCCCGAACCTAACGTCCACACCATACTAGTAGATATTCGTTTTTATT
AGATGTATGATTAGTACCAATGTGGGCTGCTCAGCGGTTCGTAATATCAC
GGTGGCCCCTAAAAAATAGGCCCACAATTAAGCCCCAAACACCCACGTTG
GCGCTGTATGTTAAGAAGTACCTGATACTGCGTTGATCCCGGATCCGGTT
CGTTTAAACACAACAACAACAACGCGGTTGATGCAAAGGCTTTCCATCGA
TGCTATATTTGTAATATTCACAAAATTAATTGGGAAGGGTAACCTAGCCC
TTCTCTCGTTTTCACCTTTTTTCGGGTCCATTTATTAGGGGCCACCGTGA
TAGTAGATATTCGTTTTATTCTACCAATAGTACCAAATGTGGGCTGTTCA
ACGGTTCGTAATAGTATATACGAGGTACTCGTTTTATTATACCAATACAC
TAGTACCAATGTGGGCTGTATAGCGGTTCGTAATATTAATAGTATTTTTA
TCGTCTCCTGCGAAAGTGAAAATCAGTTAATGTCTTGAATTATCATAGTA
TGAATTAATTAATTTTTTGGCGTTTCATACTATTAATAATAGAATTTCTA
CCTACTATCTACTAGCTACTACTACCACTACTACACAACAACAACTATAC
CACTACAGTATTTAAACCTATCTAGTAATAGTAGTTTAGGATGTGGTTTT
TCATGATGTAGATGGCATAGAAATAAGTCAGCGAAAGAGAGATGGGGACA
TTCGTTTTTATTACATGTATGATTAGTAACAATGTGGGCTGTTCAGCGGT
TCGGAACAATATATTCGAAACTAACCCTAACCTTAACTTAATGTCCACAC
CATACTAACAGCAAGTAAAAAACCTCCCTGAAGATCTCGTCAATAGATAG
TACTGTCAATAATCATGTGTTGTGGATAGACGGTTAATCTGTTGCCTCGG
GTAGCTCAGAGGATTAAGCCCTTTACAAGTGGCGTTAGTGACAAGACACG
ATCGCTGTGCGTGAAGATCACAATGCTTTTCGAAATGCGGTTTGTTTTTG
CTTTGTTTGTTTTGTTACGTCCTCCTTTGGCGGATGCGCAAAAAAACAAC
ACAGATAGCTTATAGCCCACCGCTCTTCCACAGCAAGCTGTCTTATGATA
CTTGTTTTTATTTTTATTTTTCAACTACGATGCAAACATATTCAATCAGC
CGTACGCGACGTTCCAAACTGGCTCGGCAACCAGAGGGGAAAATCGCCAA
GTTTCACTGGCTGTGTGATACGATTATTGTAATACGAGTACTACGCCAGT
TGCGCGTAACCTACAAGCACACAACACTGCTGCCGTTGCGACTGCGTGGG
ATACGTCGATTCTATTGGTCCCTCACTTTACCCCTGTCTCTTGCCGTCGG
AATAGCACTGCATATAGTACGACTTCGTATCACCATTTCGTACTGTCAAA
ATCGGAAAGTGGTTCCCTATAAGGCTGCAGCTCCCTAGGTCAAACGTCAA
AAACGAGTCCCTACGGCCGCGGCTTTTTTAATTCACTACACCATGCCGAC
TGTACCCGATCGTACTGGTCTGCATCACAGAGATTTTTTATTTCGTGTGT
GCCCCCAAAAATATCACGTCTCTCCAACGCCCCAATCAATCGCTGCACAC
AAGCCATCTATGATAGAACACAATCGCATATTTATGTTTGGGGTATCGTA
CTGTACACTTTTTGTCTTCGTGTCCTGCCGACAGGTTTCCCCCATAATCG
ACGCGGGAGTCCTCGGGGTGCGCCCGCCCAATCCTTCTACTGCTCCTCCT
CCTTCTACTACTACTACTCCTCGGCCTGAACCCGTAGTGGGCATGGCCGG
AGCAGCGGCGGAAGCAGAGGTGGTGTCAGAGGACGACGTTAGCACGCGGT
GGGCTGCAGAAGGCGCCACGGACGGGACCGCCGGTGACTCGTACTCTCCC
GCGTTCGAGGCTTCCTCTGATGCGCTTGATGGTGTTGGTGGCTTGTCGGC
GGCGGCAGTGAGTTCGACGGGCGAGCTAACGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig1:2860359..2870890-

>mRNA_D-herbacea_F_contig1.113.1 ID=mRNA_D-herbacea_F_contig1.113.1|Name=mRNA_D-herbacea_F_contig1.113.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1860bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2860359..2870890- (Desmarestia herbacea DmunF female)
GGAAAGTTGTCGGGGGCGTGGTGGGGTCAGACGCGATTTCGGCGACGACA
GCGACCGTGGAGGCGAGGGAGGGAAAGGGGCTCCCCAGTGGTGGTGGATG
GGGGTTCCGGTGAAACGGAGTACTACTCCTGGGAAAGTTGTCGGGGGCGT
GGTGGGGTCAGACGCGATTTCGGCGACGACAGCGACCGTGGAGGCGAGGG
AGGGAAAGGGGCTCCCCAGTGGTGGTGGATGGGGGTTCCGGTGAAACGGA
GTACTACTCCTGGACCGAGACAGATGCGGACATGGAGGTGCGCGTGTCGT
TGCCTCCGGGTACACCTTCGAAGGCGGTACAGCTGAGCGTAACCAGGTCG
TCGCTCACGCTGGGGCTTAGGGGGCGGGAGTCGCCCATCTTGAAGGACCG
AGACAGATGCGGACATGGAGGTGCGCGTGTCGTTGCCTCCGGGTACACCT
TCGAAGGCGGTACAGCTGAGCGTAACCAGGTCGTCGCTCACGCTGGGGCT
TAGGGGGCGGGAGTCGCCCATCTTGAAGGGAACTCTCTTGGGGGAGGTGC
AGGCGGACATGAGCCACTGGACCATGGGGAACTCTCTTGGGGGAGGTGCA
GGCGGACATGAGCCACTGGACCATGGAGGAGATGGACGATACGGGCGCCA
AGGTGCTGTACCTCTGCCTTGAGAAGGTCGTTGGTGATGAGGACAGCGAG
GATTGGGAAGGGGTGCTGGAGGGGGAGGAGGCACTGAACGTTTGGTACGC
CAACAAGGATAAGAGGAGATGGACGATACGGGCGCCAAGGTGCTGTACCT
CTGCCTTGAGAAGGTCGTTGGTGATGAGGACAGCGAGGATTGGGAAGGGG
TGCTGGAGGGGGAGGAGGCACTGAACGTTTGGTACGCCAACAAGGATAAG
GCGTTCGACGTGAACGAGTACGTAAAGAAGATGGGATACGACAGGGAGCG
GGACCTCGACAAAGCGTTCGACGTGAACGAGTACGTAAAGAAGATGGGAT
ACGACAGGGAGCGGGACCTCGACAAAGTAGACAAGACCATGTTCTCCGAC
TTGACCTCGGAGATGAGGCAGAACCTGGAGACTAACCTTCCCAAAACGAG
CTTCACGGAGAAGGACGACATGATCCCAGTCGTTGCGGAACCAAAGGTAG
ACAAGACCATGTTCTCCGACTTGACCTCGGAGATGAGGCAGAACCTGGAG
ACTAACCTTCCCAAAACGAGCTTCACGGAGAAGGACGACATGATCCCAGT
CGTTGCGGAACCAAAGGTTTCCCCCATAATCGACGCGGGAGTCCTCGGGG
TGCGCCCGCCCAATCCTTCTACTGCTCCTCCTCCTTCTACTACTACTACT
CCTCGGCCTGAACCCGTAGTGGGCATGGCCGGAGCAGCGGCGGAAGCAGA
GGTGGTGTCAGAGGACGACGTTAGCACGCGGTGGGCTGCAGAAGGCGCCA
CGGACGGGACCGCCGGTGACTCGTACTCTCCCGCGTTCGAGGCTTCCTCT
GATGCGCTTGATGGTGTTGGTGGCTTGTCGGCGGCGGCAGTGAGTTCGAC
GGGCGAGCTAACGGTTTCCCCCATAATCGACGCGGGAGTCCTCGGGGTGC
GCCCGCCCAATCCTTCTACTGCTCCTCCTCCTTCTACTACTACTACTCCT
CGGCCTGAACCCGTAGTGGGCATGGCCGGAGCAGCGGCGGAAGCAGAGGT
GGTGTCAGAGGACGACGTTAGCACGCGGTGGGCTGCAGAAGGCGCCACGG
ACGGGACCGCCGGTGACTCGTACTCTCCCGCGTTCGAGGCTTCCTCTGAT
GCGCTTGATGGTGTTGGTGGCTTGTCGGCGGCGGCAGTGAGTTCGACGGG
CGAGCTAACG
back to top