mRNA_D-herbacea_F_contig1.112.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.112.1
Unique NamemRNA_D-herbacea_F_contig1.112.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1.112.1 vs. uniprot
Match: D7FUA9_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUA9_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 9.830e-27
Identity = 67/111 (60.36%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:   91 GELTARQREVSAGLRATYDDLVKSGMLQEELGPDGTPGSPPDMDELARTYDTEGGFMFKDGDFSEEELSKY-----------AAATVASGAGGMPDIDIDDPAVRAAFGLD 390
            GELT RQREV+AGLR TY+ LVK+GM+QE   PDGTP   PDM+E+AR Y+TEG FMFK+GDFSEEELSKY           A   +     G  DID+DDPA R+AFGLD
Sbjct:  488 GELTERQREVAAGLRRTYEKLVKTGMVQE-TNPDGTPAKMPDMEEMARAYETEG-FMFKEGDFSEEELSKYMDMXXXXXXXXAGLALDDDLPGG-DIDLDDPATRSAFGLD 595
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUA9_ECTSI9.830e-2760.36CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:2855843..2860461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue7.6e-14
Seed eggNOG ortholog2880.D7FUA9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size586
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.112.1prot_D-herbacea_F_contig1.112.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 2856036..2859648 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927396.8857207-UTR-D-herbacea_F_contig1:2855842..28560351622927396.8857207-UTR-D-herbacea_F_contig1:2855842..2856035Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2855843..2856035 -
1690790146.9254253-UTR-D-herbacea_F_contig1:2855842..28560351690790146.9254253-UTR-D-herbacea_F_contig1:2855842..2856035Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2855843..2856035 -
1622927396.9203389-UTR-D-herbacea_F_contig1:2859648..28597111622927396.9203389-UTR-D-herbacea_F_contig1:2859648..2859711Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2859649..2859711 -
1690790146.949267-UTR-D-herbacea_F_contig1:2859648..28597111690790146.949267-UTR-D-herbacea_F_contig1:2859648..2859711Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2859649..2859711 -
1622927396.9329052-UTR-D-herbacea_F_contig1:2860359..28604611622927396.9329052-UTR-D-herbacea_F_contig1:2860359..2860461Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2860360..2860461 -
1690790146.9565096-UTR-D-herbacea_F_contig1:2860359..28604611690790146.9565096-UTR-D-herbacea_F_contig1:2860359..2860461Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2860360..2860461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927396.8969781-CDS-D-herbacea_F_contig1:2856035..28562031622927396.8969781-CDS-D-herbacea_F_contig1:2856035..2856203Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2856036..2856203 -
1690790146.9347231-CDS-D-herbacea_F_contig1:2856035..28562031690790146.9347231-CDS-D-herbacea_F_contig1:2856035..2856203Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2856036..2856203 -
1622927396.9100676-CDS-D-herbacea_F_contig1:2859588..28596481622927396.9100676-CDS-D-herbacea_F_contig1:2859588..2859648Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2859589..2859648 -
1690790146.9418616-CDS-D-herbacea_F_contig1:2859588..28596481690790146.9418616-CDS-D-herbacea_F_contig1:2859588..2859648Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2859589..2859648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.112.1

>prot_D-herbacea_F_contig1.112.1 ID=prot_D-herbacea_F_contig1.112.1|Name=mRNA_D-herbacea_F_contig1.112.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=76bp
MLQEELGPDGTPGSPPDMDELARTYDTEGGFMFKDGDFSEEELSKYAAAT
VASGAGGMPDIDIDDPAVRAAFGLD*
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mRNA from alignment at D-herbacea_F_contig1:2855843..2860461-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.112.1 ID=mRNA_D-herbacea_F_contig1.112.1|Name=mRNA_D-herbacea_F_contig1.112.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4619bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2855843..2860461- (Desmarestia herbacea DmunF female)
GCCGGTGACTCGTACTCTCCCGCGTTCGAGGCTTCCTCTGATGCGCTTGA
TGGTGTTGGTGGCTTGTCGGCGGCGGCAGTGAGTTCGACGGGCGAGCTAA
CGGTAAGCGGTGTACTCGTTTCGTGTGGCCGGCCGCATTTTTTATTTTGC
TTGCGCTCCTTTTCCGCTCTCTATCTGGTAGGATGACTATTGTTAGACTT
TCACAGCGTGCCGTTTTGTTTTTTGCGGGGGTGGGAAAGGGGGGGTTAGG
TCTGCGTCGCAATGTGATGACCCTGCCGTTGAGTCGCCATCATCCCTTGG
CTTCTGCGCCAAGCGCTGTGGGCAGGCGGGAGGGGGGGGGGGGTGCTGTG
TTGCTTACGTACCGTTCGACAGAGTGAGAGAGACCTGCGATATCGCAATG
TCGAAAACGCATGCGGCATCGTTGCTGCGTTGACGGCATTGAAACTTGTG
GGTGGATCCCATATGGCGGGCCGCTGGGTGTTCGTACATCATCTATTTTA
TTTTCCTGAACTTTACTGGTCTGTCGACGCTGTCCTATTTAGTATACAAG
GGCCGTCAAGAACGAAAATAAAACGAGCGCCTTGCAGTATACTTTTAACA
ACGCCGTTGGTTTGTATTTTTGCGCAAAAAAATGCCAAATTGATCGCGCC
ACTTTTTCTTGAGCATGTTCGACTTCAACAATTTGCGCATATTTTTGTTT
TCGTGAGCAATGCCTGCCTGCTACTCTATACCGTTACGACCACACCGCAG
GCGAGGCAACGCGAGGTGTCGGCGGGGCTGAGAGCAACGTACGACGACCT
GGTGAAGTCCGGCATGCTCCAGGAAGAGCTGGGTCCCGACGGAACACCCG
GCAGTCCGCCGGACATGGATGAGGTGTGCGAGTTGTTGTTGTTGTTTCTC
ACATTAGCTCATCTCAAAAGATCTCGCCCGTGGTCACAAAACCCGTCACA
ATAACGCTCCAGAAGGAAAAACAAAGCAAATAAAGCAAAAAAATATATAC
ATATGGGAAAGAGCAGTGCCCAAGGAGGGCGGACCCTTTCGCCAGAGAAA
GAAAAAAATAATACGCAGACTCGAAAGAAACTCATAACAAAATAAGCTAA
CAACTATGAAAACCAAAAAAAAGGACCATAAGAAAAGTCGACAATGAGAT
ATATCCGATCGCCAGCGACAACAGCTACATCTAGAGTTGCTGTCCCCCTT
CCAATGTGGGTCTTGCCATGGATACACGCATGGATCCCTAGACGGGGCAA
CACGGCTGTACAGTAAGAGGGCAGTGCCAGCGAACACTTTTCTATTGTTT
TAACGCGAAGGACACGAACGGACTTACGTGTGTGCGTGCGTATAATTTGC
TGTTAAAAATTGTCCACAATAAGGACTGGGGGGAAGCCATGCTACGATAG
CGGGGGGGGGGGGGCATTTTTTGCATGCCTTACTGTGTTGACCATTGACC
ACGCATCCCTTCCGTGACGGAGCACCGTTCCTACTCCTAACAGAAACACC
TCCAACCATTGTTTGGGCAACTTTTTTTTACGTTTTTGCCGTATCTTACA
TTAAAATCATTTTGCTTATCTTAACCTCGTACAAGGTAGCTTTTGTGGCC
ACAGTATATCTCATATGATAGCGATCATTTTCTCGTTATTATCTAGTGTA
CCGAACATGTGGGAGAGAGGGTACTTTTGGGCCCAAAATATTCTGACTGA
CAAGGCTCCTTAGCTGAGGAACTACCCAATATCTTGAACTCTCATTCGTG
TTGGAAAATTTAGTTTGGTTTTTCGGGTTGCTCGTATTGTTTTTGTGTAA
GATGGTTTCGGCGTGAGATGCGAAGCTCCTCATGTGAGGAGCCTTCAGAA
AATTGTGTACCCCCCCCTACCGTGGCGTGCCTCGGGGATCTCCATTGACC
AAAGGGCAAACCGTCGATATTAGCACACATGTATAAACCATTGTTGTCGT
GTATCAACCATTGCGTGTGGCGCGGCGTTACTAATGAGTGTGCTCGGTGC
TCGGAGAAACCGGGGGCCCTCGTGGTACTTGGGGAGTACAGGCACGCCGC
CTGAATGTGAAACATCTGGCAGTCCGGGATGTCGAACGAACCTATTCGGC
AAACCAGTTTGGCGTAGCAGCGCTGATAGGGTGGTGGCTATTGCTTAGCT
TTATGTGGCAGCTGGTATCATGACCCATTGTGCACGACAGCTTGGGTGGT
GACAGCTCGGTGTACCACTCCGTAGCTATCTAGTAGCGGTCGGATGTGCG
AGGTTTTCGTACTGAGTACAACAGGATGCAGCATACACACAGCATCAGCA
ACAACACGCAGCAGCACACAGCATAACAGCATGCGGAATACATGCAGCGT
AATCAGCAACACACAACAGTAGGAACGGCACACAACAGCCTACAGTATAA
CAGCATGGCAGCATGAGGATACATACATCTGCAAGAACACCAAACAGTAG
GAGCGGCACATACCAGCATACTGCATACAGCATGCAGCATGCAGCATACA
CAAAAACATCGGTATCAACACGCAGCAGCAGGCACAGCACACAGCAGCTA
ACAGCATAGCAGCAGGCAGCATAGACACAACATGAGCAACATACCCAACA
ATAGGAATGGCGCACAACTGCATAGAGCACGCAGCATCGGCAATAACACG
CAACAGCAGGCACGGCACACAACGGGATAACAGCATGCGGTATACACACG
GCAATATCAACAACTTTCAACGGTTGGGACAGCACACAACGGCATACTGC
ATTACAGCATGCAGCACACACACCACAGCAACAGCCGCCACACGCAGCAG
CAGGCACGGCACACAACAGCGTACAGCATAGCAGCATGCGGTATACACCG
AGCATAATCAACAACTCACACCAGTTGGAAGAGCACACAAGAGCATGCAG
CATACACACATCAGCAGCAACCACACGCAGCAGCAGGCACGGCACACAAC
AGCGTACAGCATAACAGCATGCGGTATACACACAGCATGATCAACAACTC
ACTCCAGTTGGAAGCGCACACAAGAGCATACTGCATAACAGCGTGCAGCA
CACACACAACAGCAGCAGCAACCACACGCAGCAGCAGGCACGGCGCACAA
CAGCATACAGTATAACAGCATGCGGTAAACACACAGCATATTCAACAACT
CACACCAGTTGGAAGAGCACACAAGAGCATACTGCATAACAGCATGCAGC
ACACACACAACGGCAGCAGCAACCACACGCAGCAGCAGTACGGCACACAA
CAGCATTGCAGCATACGGCATAACAGCATGCGGTATACACACAGCATAAT
CAACAACTCACACCAGTTGGAAGAGCACACAAGAGCGTACAGCATAACAG
CATGCAGCATACACACATCAGCAGCAACCACACGCAGCAGCAGGCACGGC
ACACAACAGCGTACAGCATAACAGCATGCGGTATACACACAGCATGATCA
ACAACTCACTCCAGTTGGAAGAGCACACAAGAGCATACTGCATAACAGCG
TGCAGCACACACACAACAGCAGCAGCAACCACACGCAGCAGCAGGCACGG
CACACAACAGCATACAGCATAACAGCATGCGGTAAACACACAGCATATTC
AACAACTCGCACCAGTTGGAAGAGCACACAACAGTATACTGCATAACAGC
ATGCAGCACACACACAACAGCAGCAGCAGCAGCAACCACACGCAGCAGCA
GGCACGGCACACAACAGCATACGGCATAACAGCGTGTGGTATACAGCATG
ATCAACAACTAACACCAGTTGGAACATCACACAAGAGCACTGCATAACAG
CATACAAACAACAGCAACAGCAGCCACACGTAGCAGCAGGCACGGCACAC
AACAGCGTACAGCATAACAGCATGCAGCATACACACAACAGCAACAGCAA
CCACACGTAGCAGCAGGCATGGCACACACCAGCGTACAGCGTAACAGCAT
GCGGTATACACACAGCATGATCAACTACTCGCAACAGTTGGAAGAGCACA
CAACAGCATACTGTACATAACAGCACAACAGCATGCAGCTCGGATATTTA
CAGAGGTTTTGACTTGATATTAGTATAGGTGCGTTCGTTAGGGTAAGGGT
TAGGGTTAGTGATAGAATTTTCCGAAATTGCTAAACAGCCCATGTTGTTA
CTACAGTAGTCATATACGTAATAAAACGAATATCCCAAATACCCGAGCAA
ATGTACAGCAACGCTAAGGCGGCTCTTCGTGTTTCTTGCTTTATTCACCC
CTCCGCAGCTGGCAAGGACGTACGATACGGAAGGAGGGTTCATGTTTAAG
GACGGCGATTTCTCGGAGGAGGAGCTTAGCAAGTACGCCGCGGCGACTGT
TGCGTCAGGGGCGGGGGGCATGCCGGACATCGATATCGACGACCCCGCTG
TTCGCGCAGCGTTTGGCCTGGATTAGCTATGATACATAACGACGTACTTT
GGAGTCGAGTTATAATAAGCACTCGTACACAAAACAAATGCGAGGGCGGG
AGGGGGGTTCGGTGAGCAAAACGAAGGATATATATAGATGCTCAAGCGTG
GTGCTTATCCTTTTTAAATTTTACCCTCCATAATGTTTGATTGATCGGCC
ATTAACCATCCATGTGCAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:2855843..2860461-

>mRNA_D-herbacea_F_contig1.112.1 ID=mRNA_D-herbacea_F_contig1.112.1|Name=mRNA_D-herbacea_F_contig1.112.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=456bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2855843..2860461- (Desmarestia herbacea DmunF female)
ATGCTCCAGGAAGAGCTGGGTCCCGACGGAACACCCGGCAGTCCGCCGGA
CATGGATGAGATGCTCCAGGAAGAGCTGGGTCCCGACGGAACACCCGGCA
GTCCGCCGGACATGGATGAGCTGGCAAGGACGTACGATACGGAAGGAGGG
TTCATGTTTAAGGACGGCGATTTCTCGGAGGAGGAGCTTAGCAAGTACGC
CGCGGCGACTGTTGCGTCAGGGGCGGGGGGCATGCCGGACATCGATATCG
ACGACCCCGCTGTTCGCGCAGCGTTTGGCCTGGATTAGCTGGCAAGGACG
TACGATACGGAAGGAGGGTTCATGTTTAAGGACGGCGATTTCTCGGAGGA
GGAGCTTAGCAAGTACGCCGCGGCGACTGTTGCGTCAGGGGCGGGGGGCA
TGCCGGACATCGATATCGACGACCCCGCTGTTCGCGCAGCGTTTGGCCTG
GATTAG
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