mRNA_D-herbacea_F_contig1.11.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.11.1
Unique NamemRNA_D-herbacea_F_contig1.11.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 9.970e-20
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = -1 
Query:    1 DDEERSSRVYLDPLEWWRVKSADFPHLAILARRVLAIPATQAESERLFSCAGNI 162
            ++++  ++VYLDPL+WWRV+ ADFPHLA LARRVLAIPATQAESERLFSCAGNI
Sbjct:  211 EEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNI 264
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 9.990e-10
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = -1 
Query:    7 EERSSRVYLDPLEWWRVKSADFPHLAILARRVLAIPATQAESERLFSCAG 156
            EE+   V   PLEWWRVK+ ++P LA LARRVL IPA QA+SER+FS AG
Sbjct:  470 EEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAG 519
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: UPI000EFF4741 (zinc finger BED domain-containing protein 1 n=1 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=UPI000EFF4741)

HSP 1 Score: 62.8 bits (151), Expect = 1.780e-9
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = -1 
Query:    1 LDPLEWWRVKSADFPHLAILARRVLAIPATQAESERLFSCAGNI 132
            +DPL WW++   DFPHL+ILAR+ L IPA+ + SERLFS +GN+
Sbjct:  118 MDPLTWWQLHQVDFPHLSILARKYLCIPASSSPSERLFSTSGNV 161
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.320e-9
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = -1 
Query:    1 SADFPHLAILARRVLAIPATQAESERLFSCAGNI 102
            S DFPHLA LARRVLAIPATQA+SERLFSCAGNI
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNI 184
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.400e-9
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = -1 
Query:   22 RVYLDPLEWWRVKSADFPHLAILARRVLAIPATQAESERL 141
            +VY DPL+WWR +  +FPHLA LARRVLAIP++QA SER+
Sbjct:  510 KVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: A0A015I940_RHIIW (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015I940_RHIIW)

HSP 1 Score: 62.0 bits (149), Expect = 1.580e-8
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = -1 
Query:    1 DPLEWWRVKSADFPHLAILARRVLAIPATQAESERLFSCAGNI 129
            +PL+WWR++S +FP LA LAR+ LAIPAT   SERLFS AGN+
Sbjct:  660 NPLDWWRIRSQNFPKLAKLARKYLAIPATSVSSERLFSDAGNL 702
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: R7TXD1_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=2 Tax=Capitella teleta TaxID=283909 RepID=R7TXD1_CAPTE)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-8
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = -1 
Query:    1 DPLEWWRVKSADFPHLAILARRVLAIPATQAESERLFSCAGNI 129
            DPL+WW  K A +P +A++AR +LA+PA+   +ER+FS AGNI
Sbjct:   26 DPLKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLAGNI 68
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: R7UJ35_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJ35_CAPTE)

HSP 1 Score: 56.2 bits (134), Expect = 5.050e-8
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = -1 
Query:    1 DPLEWWRVKSADFPHLAILARRVLAIPATQAESERLFSCAGNI 129
            DPL+WW  K A +P +A++AR +LA+PA+   +ER+FS  GNI
Sbjct:    3 DPLKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLGGNI 45
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: UPI000905A7C7 (zinc finger BED domain-containing protein 1-like n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000905A7C7)

HSP 1 Score: 58.2 bits (139), Expect = 2.630e-7
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = -1 
Query:    1 DPLEWWRVKSADFPHLAILARRVLAIPATQAESERLFSCAGNI 129
            DPL WW+     +PHLAI+AR  LA+PAT   SER+FS AG+I
Sbjct:  243 DPLTWWKSNECKYPHLAIMARHYLAVPATSVPSERVFSTAGDI 285
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BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Match: A0A1S3M108_SALSA (zinc finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Salmo salar TaxID=8030 RepID=A0A1S3M108_SALSA)

HSP 1 Score: 56.6 bits (135), Expect = 2.900e-7
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = -1 
Query:    1 DPLEWWRVKSADFPHLAILARRVLAIPATQAESERLFSCAGNI 129
            DPL WW+     +PH+A++ARR LA+P T   SER+FS AG+I
Sbjct:  109 DPLAWWKSNECKYPHIAMMARRYLAVPGTSVPSERVFSMAGDI 151
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE9.970e-2077.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE9.990e-1064.00Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI000EFF47411.780e-959.09zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A6H5JPB0_9PHAE4.320e-991.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KUY5_9PHAE4.400e-967.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A015I940_RHIIW1.580e-865.12Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rh... [more]
R7TXD1_CAPTE2.230e-853.49Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
R7UJ35_CAPTE5.050e-851.16Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI000905A7C72.630e-758.14zinc finger BED domain-containing protein 1-like n... [more]
A0A1S3M108_SALSA2.900e-753.49zinc finger BED domain-containing protein DAYSLEEP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:255644..256051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size408
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927383.5896633-CDS-D-herbacea_F_contig1:255643..2559851622927383.5896633-CDS-D-herbacea_F_contig1:255643..255985Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 255644..255985 +
1690790135.6661787-CDS-D-herbacea_F_contig1:255643..2559851690790135.6661787-CDS-D-herbacea_F_contig1:255643..255985Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 255644..255985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927383.5982134-UTR-D-herbacea_F_contig1:255985..2560511622927383.5982134-UTR-D-herbacea_F_contig1:255985..256051Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 255986..256051 +
1690790135.7001784-UTR-D-herbacea_F_contig1:255985..2560511690790135.7001784-UTR-D-herbacea_F_contig1:255985..256051Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 255986..256051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.11.1prot_D-herbacea_F_contig1.11.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 255644..255985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.11.1

>prot_D-herbacea_F_contig1.11.1 ID=prot_D-herbacea_F_contig1.11.1|Name=mRNA_D-herbacea_F_contig1.11.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=114bp
DVPSAGEQALRLRLCGGDGEHTAGEDSQVREVGALHPPPFQGVEINPGAP
LLIILFLVAAIFSLLAAIFSMPDVVIPPVVPTRFPLLLVHLQTHGRLEGL
YLKPHRVDDERGR*
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mRNA from alignment at D-herbacea_F_contig1:255644..256051+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.11.1 ID=mRNA_D-herbacea_F_contig1.11.1|Name=mRNA_D-herbacea_F_contig1.11.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=408bp|location=Sequence derived from alignment at D-herbacea_F_contig1:255644..256051+ (Desmarestia herbacea DmunF female)
GATGTTCCCAGCGCAGGAGAACAGGCGCTCCGACTCCGCCTGTGTGGCGG
GGATGGCGAGCACACGGCGGGCGAGGATAGCCAAGTGCGGGAAGTCGGCG
CTCTTCACCCGCCACCATTCCAAGGGGTCGAGATAAACCCTGGAGCTCCT
CTCCTCATCATCTTGTTTCTCGTCGCTGCCATTTTCTCCCTCCTCGCTGC
CATCTTCTCCATGCCCGATGTCGTCATTCCCCCCGTCGTTCCCACCCGTT
TTCCCCTTCTCCTCGTACATCTGCAAACACATGGCCGCCTCGAAGGCCTC
TACCTCAAGCCGCACCGTGTTGACGATGAGAGAGGTCGTTGAGTCATCAG
CGCCGCTGTTCCTCTGCTGAGCCGATGCTTTTCCTGCCGACTGTGCCGCT
GCCATGAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:255644..256051+

>mRNA_D-herbacea_F_contig1.11.1 ID=mRNA_D-herbacea_F_contig1.11.1|Name=mRNA_D-herbacea_F_contig1.11.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=684bp|location=Sequence derived from alignment at D-herbacea_F_contig1:255644..256051+ (Desmarestia herbacea DmunF female)
GATGTTCCCAGCGCAGGAGAACAGGCGCTCCGACTCCGCCTGTGTGGCGG
GGATGGCGAGCACACGGCGGGCGAGGATAGCCAAGTGCGGGAAGTCGGCG
CTCTTCACCCGCCACCATTCCAAGGGGTCGAGATAAACCCTGGAGCTCCT
CTCCTCATCATCTTGTTTCTCGTCGCTGCCATTTTCTCCCTCCTCGCTGC
CATCTTCTCCATGCCCGATGTCGTCATTCCCCCCGTCGTTCCCACCCGTT
TTCCCCTTCTCCTCGTACATCTGCAAACACATGGCCGCCTCGAAGGCCTC
TACCTCAAGCCGCACCGTGTTGACGATGAGAGAGGTCGTTGAGATGTTCC
CAGCGCAGGAGAACAGGCGCTCCGACTCCGCCTGTGTGGCGGGGATGGCG
AGCACACGGCGGGCGAGGATAGCCAAGTGCGGGAAGTCGGCGCTCTTCAC
CCGCCACCATTCCAAGGGGTCGAGATAAACCCTGGAGCTCCTCTCCTCAT
CATCTTGTTTCTCGTCGCTGCCATTTTCTCCCTCCTCGCTGCCATCTTCT
CCATGCCCGATGTCGTCATTCCCCCCGTCGTTCCCACCCGTTTTCCCCTT
CTCCTCGTACATCTGCAAACACATGGCCGCCTCGAAGGCCTCTACCTCAA
GCCGCACCGTGTTGACGATGAGAGAGGTCGTTGA
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