mRNA_D-herbacea_F_contig1.109.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.109.1
Unique NamemRNA_D-herbacea_F_contig1.109.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:2776823..2778589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size493
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.6843727-CDS-D-herbacea_F_contig1:2776822..27769181622927380.6843727-CDS-D-herbacea_F_contig1:2776822..2776918Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2776823..2776918 +
1690790135.4841986-CDS-D-herbacea_F_contig1:2776822..27769181690790135.4841986-CDS-D-herbacea_F_contig1:2776822..2776918Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2776823..2776918 +
1622927380.6970994-CDS-D-herbacea_F_contig1:2778194..27785871622927380.6970994-CDS-D-herbacea_F_contig1:2778194..2778587Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2778195..2778587 +
1690790135.5031266-CDS-D-herbacea_F_contig1:2778194..27785871690790135.5031266-CDS-D-herbacea_F_contig1:2778194..2778587Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2778195..2778587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.109.1prot_D-herbacea_F_contig1.109.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 2776823..2778587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.109.1

>prot_D-herbacea_F_contig1.109.1 ID=prot_D-herbacea_F_contig1.109.1|Name=mRNA_D-herbacea_F_contig1.109.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=163bp
TSAAASVVAAEEAAGSLSAGGETTAATTAGDEAVLPTGTSTAAIAAGIEE
RSVVAPATSSSSVPEVVPEVASTSTVDVVPPSVEDNPPAHDTSMDVFVAQ
GNKTAEPIPASVATAGGGAGLMSRPPPPYEDEVTAESVGDDDGGTMSFFA
ESDVEEDHAGEAA
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mRNA from alignment at D-herbacea_F_contig1:2776823..2778589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.109.1 ID=mRNA_D-herbacea_F_contig1.109.1|Name=mRNA_D-herbacea_F_contig1.109.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1767bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2776823..2778589+ (Desmarestia herbacea DmunF female)
ACGTCTGCGGCAGCGAGCGTCGTGGCGGCGGAAGAGGCCGCCGGATCTCT
GTCAGCTGGAGGCGAGACAACTGCTGCCACTACTGCAGGGGATGAGGTGC
TATCCTACCGTCGTCCCTTCTATTTTGATATTTATTTTTTGCCCTACTTT
TTTTATTTTATTTTATTGTTTTGTCCGGTACTTTTACATTCCAGTCCGCA
GCTCACTAAGTGAGCTCTTGTATTCGTCGCTCCGCGCGCCTATCTCTGGG
CACGCCGTGGTCACAGGTGTCTTCCCCTCTCCACCCCGTTATGTGCCCCG
GTTTTTGTCGCGCATGAGGGGTGGCCCAGTGGTCTAATTGGTAGAGTTTT
TCCTCTGTTGGCGGAAGTTGGGGGTTCGATTCCCGGTGGCACTTTTCTAT
GTCATTTTCCGTCGCGGAAAACGCAAGAAGAGCGCGAGTAAGCACAATTC
GATGAAAGTCGACGAGGGAAGAAAGTGCTGCACTCTTCTCGCTATAAAAA
TGTAGGCACGTACCGTAGTGGGAAGGAGGGAGGAGCGCCTGCTATGTGAC
CCCGGATCTGAGTTACGAAGAGAGAGATGGAGCTAGAGTAAGACTAGGGC
GAAGATAATAAATGGGACGGAAAAAAAAATGAATTAAAAAAAATAAGGTT
CGCCAGTCCCATAGCTCGTCGAACTATAAAATATACGAGTACGAGTAATG
TGTGTACTTCGTATGTAGACTATATATACTTGTGATTTCAATTTCTTTTC
TTTTTTTCTTTCCCATCTAAACACCATGGTTGTCAAAACGCGCGTTCTTT
CCCCGACCGTTTTTGTAAATATCACAAATATATTGATTTATCGAGTCAAT
GGGATCCGCTCGTCTGTCTTGATACGAAGTATTATTTTTTATTGCAAATC
CATCGGCCGTGACGTTCCGAAGTGGTTCGGGGGGCCAGGGGATACTCGCC
AAACTCACTGTGTGATACTTGGGTCGCGCGGAGTCTATCGGTCCTCAGAT
ACGGTGTAACGCAGTGACTCTCCTGGGTTGTCCCAGGCTCTACAGGATGA
TACTAGTAGAGGGGGAGAAAAACAGCAAAATAAATACCTGGTATGTCATT
ACATGCGAGTAGAGCTCTACCCCCCCCGGCCTAAAAGCGCAGCGCGGTGT
CTTTTATTTTTTTATCTTGCGACGCATGTGTAAAAGCTATCATAAATCTA
AAATCAAGGTTTACACACCCTCACAATTTTTTCACGGTTCAGCTTTTTGA
AGGTTCTGTCTGTCTTGTCTTGTCTTGTCTTGTCTTGTTTTTTTTTTTTT
TTGTAAAGCGTTTGGTAAGCTTGTTTGACCTTCTCTCGGCGTTTTTGGTG
CTGTCATCTATCTGTTTGACAGGCCGTATTACCGACGGGAACGTCTACTG
CGGCGATCGCCGCGGGAATCGAAGAACGGTCGGTAGTTGCGCCGGCGACC
TCATCGTCGTCGGTACCGGAGGTTGTCCCCGAGGTAGCCAGCACCTCCAC
GGTAGACGTCGTCCCCCCCTCTGTGGAAGACAACCCCCCAGCGCATGATA
CATCAATGGACGTCTTCGTGGCACAAGGGAACAAGACAGCCGAGCCAATC
CCAGCCTCAGTAGCCACTGCCGGAGGAGGAGCTGGATTGATGTCGCGACC
GCCGCCTCCGTACGAAGATGAAGTGACCGCGGAGAGCGTGGGAGACGACG
ACGGAGGCACGATGAGCTTCTTCGCGGAGTCGGACGTTGAGGAGGACCAT
GCTGGTGAAGCGGCGGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:2776823..2778589+

>mRNA_D-herbacea_F_contig1.109.1 ID=mRNA_D-herbacea_F_contig1.109.1|Name=mRNA_D-herbacea_F_contig1.109.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=978bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2776823..2778589+ (Desmarestia herbacea DmunF female)
ACGTCTGCGGCAGCGAGCGTCGTGGCGGCGGAAGAGGCCGCCGGATCTCT
GTCAGCTGGAGGCGAGACAACTGCTGCCACTACTGCAGGGGATGAGACGT
CTGCGGCAGCGAGCGTCGTGGCGGCGGAAGAGGCCGCCGGATCTCTGTCA
GCTGGAGGCGAGACAACTGCTGCCACTACTGCAGGGGATGAGGCCGTATT
ACCGACGGGAACGTCTACTGCGGCGATCGCCGCGGGAATCGAAGAACGGT
CGGTAGTTGCGCCGGCGACCTCATCGTCGTCGGTACCGGAGGTTGTCCCC
GAGGTAGCCAGCACCTCCACGGTAGACGTCGTCCCCCCCTCTGTGGAAGA
CAACCCCCCAGCGCATGATACATCAATGGACGTCTTCGTGGCACAAGGGA
ACAAGACAGCCGAGCCAATCCCAGCCTCAGTAGCCACTGCCGGAGGAGGA
GCTGGATTGATGTCGCGACCGCCGCCTCCGTACGAAGATGAAGTGACCGC
GGAGAGCGTGGGAGACGACGACGGAGGCACGATGAGCTTCTTCGCGGAGT
CGGACGTTGAGGAGGACCATGCTGGTGAAGCGGCGGCCGTATTACCGACG
GGAACGTCTACTGCGGCGATCGCCGCGGGAATCGAAGAACGGTCGGTAGT
TGCGCCGGCGACCTCATCGTCGTCGGTACCGGAGGTTGTCCCCGAGGTAG
CCAGCACCTCCACGGTAGACGTCGTCCCCCCCTCTGTGGAAGACAACCCC
CCAGCGCATGATACATCAATGGACGTCTTCGTGGCACAAGGGAACAAGAC
AGCCGAGCCAATCCCAGCCTCAGTAGCCACTGCCGGAGGAGGAGCTGGAT
TGATGTCGCGACCGCCGCCTCCGTACGAAGATGAAGTGACCGCGGAGAGC
GTGGGAGACGACGACGGAGGCACGATGAGCTTCTTCGCGGAGTCGGACGT
TGAGGAGGACCATGCTGGTGAAGCGGCG
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