mRNA_D-herbacea_F_contig1.107.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.107.1
Unique NamemRNA_D-herbacea_F_contig1.107.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:2753066..2754190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.5653841-CDS-D-herbacea_F_contig1:2753065..27531441622927380.5653841-CDS-D-herbacea_F_contig1:2753065..2753144Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2753066..2753144 +
1690790135.3950107-CDS-D-herbacea_F_contig1:2753065..27531441690790135.3950107-CDS-D-herbacea_F_contig1:2753065..2753144Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2753066..2753144 +
1622927380.5742676-CDS-D-herbacea_F_contig1:2753744..27541901622927380.5742676-CDS-D-herbacea_F_contig1:2753744..2754190Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2753745..2754190 +
1690790135.4173973-CDS-D-herbacea_F_contig1:2753744..27541901690790135.4173973-CDS-D-herbacea_F_contig1:2753744..2754190Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2753745..2754190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.107.1prot_D-herbacea_F_contig1.107.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 2753066..2754190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.107.1

>prot_D-herbacea_F_contig1.107.1 ID=prot_D-herbacea_F_contig1.107.1|Name=mRNA_D-herbacea_F_contig1.107.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=175bp
RTWPCEYGTLTCTRALPPVLACGVSEGPPARSLVTPGAKNTRATIIMGKK
DLPPPAPPTWTETLTGYVSYATEAADGAVRSVSASVTSASDSLAAAIDSF
TTSPPSDADSSKKGKTAAASSKKKSAAAAASKNKKNKQTGGNKKKGAADD
AGGSFAFAETFAAYAETARVAAADA
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mRNA from alignment at D-herbacea_F_contig1:2753066..2754190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.107.1 ID=mRNA_D-herbacea_F_contig1.107.1|Name=mRNA_D-herbacea_F_contig1.107.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1125bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2753066..2754190+ (Desmarestia herbacea DmunF female)
CGCACGTGGCCCTGTGAATACGGCACTTTGACCTGCACACGGGCCCTCCC
CCCCGTCCTGGCTTGTGGTGTGAGTGAAGGTGAGGAGGGTGCGGTCGGTA
TAGGTTGTGGGGTGTTGATTCAAAATGCCGAAAAGCTTACATGCTACATG
TCGATGTATGTCCCTACACGCGCCTCTATAATGACAACAATCGTACAGTC
AGTAGTAGTAGTATGATAGTAGTATTCGTAGCACAACAACAACAGGAGTA
CAACAGTACAGTAGTAGTAGCAGTAGTAGTGCCGACTGCAGCATGGTCGC
ACCACAAGATGCAAATCTAAACTCGAGGCCAAAATCCACACACCCCTATG
CGCGTCCTCGTCCCACGCCTTCTGATTTAAACTTGATGCGTGGAGTATTG
GCGTGGCATTTCGCTTTGCGATGTTCAAGGAAGGCAAACAAACGTGTCGT
CGTATCATGAAAAACATATGCGTAGGCATCTGATCGGCCAGCGAATCCCG
TCGAAAAACTCTATTAATGAATAGAGCGCTACAGACAGTAGTATCATAGT
ATCATAGTATCATAGTATCATAGTAGACAGCACAGAGAGGCAGAGCTATG
ATACTACTGTATGATAATAGACTACTGTATCAAAATCCAAACGTTTGCGT
TTAGGGTTACGTTCCTTGGTGCCAAGCAGGTCCGCCTGCAAGATCCCTGG
TCACGCCAGGCGCGAAAAACACAAGAGCAACAATCATCATGGGAAAGAAA
GACCTCCCGCCGCCGGCACCGCCGACCTGGACGGAAACTCTGACGGGTTA
CGTTTCCTACGCCACGGAAGCTGCGGATGGGGCCGTCAGGTCGGTTTCGG
CATCGGTGACATCGGCCTCGGATTCTCTGGCGGCCGCCATCGACTCGTTC
ACGACCTCCCCGCCCTCGGACGCTGACAGTAGCAAGAAGGGCAAGACCGC
CGCAGCGTCCTCCAAGAAGAAGTCCGCTGCTGCTGCTGCCAGCAAAAATA
AGAAGAACAAGCAGACCGGCGGCAACAAAAAGAAGGGGGCTGCCGACGAC
GCCGGCGGTTCTTTCGCATTTGCGGAGACTTTCGCAGCGTACGCGGAGAC
GGCGCGCGTTGCGGCGGCGGACGCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:2753066..2754190+

>mRNA_D-herbacea_F_contig1.107.1 ID=mRNA_D-herbacea_F_contig1.107.1|Name=mRNA_D-herbacea_F_contig1.107.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1050bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2753066..2754190+ (Desmarestia herbacea DmunF female)
CGCACGTGGCCCTGTGAATACGGCACTTTGACCTGCACACGGGCCCTCCC
CCCCGTCCTGGCTTGTGGTGTGAGTGAAGCGCACGTGGCCCTGTGAATAC
GGCACTTTGACCTGCACACGGGCCCTCCCCCCCGTCCTGGCTTGTGGTGT
GAGTGAAGGTCCGCCTGCAAGATCCCTGGTCACGCCAGGCGCGAAAAACA
CAAGAGCAACAATCATCATGGGAAAGAAAGACCTCCCGCCGCCGGCACCG
CCGACCTGGACGGAAACTCTGACGGGTTACGTTTCCTACGCCACGGAAGC
TGCGGATGGGGCCGTCAGGTCGGTTTCGGCATCGGTGACATCGGCCTCGG
ATTCTCTGGCGGCCGCCATCGACTCGTTCACGACCTCCCCGCCCTCGGAC
GCTGACAGTAGCAAGAAGGGCAAGACCGCCGCAGCGTCCTCCAAGAAGAA
GTCCGCTGCTGCTGCTGCCAGCAAAAATAAGAAGAACAAGCAGACCGGCG
GCAACAAAAAGAAGGGGGCTGCCGACGACGCCGGCGGTTCTTTCGCATTT
GCGGAGACTTTCGCAGCGTACGCGGAGACGGCGCGCGTTGCGGCGGCGGA
CGCGGTCCGCCTGCAAGATCCCTGGTCACGCCAGGCGCGAAAAACACAAG
AGCAACAATCATCATGGGAAAGAAAGACCTCCCGCCGCCGGCACCGCCGA
CCTGGACGGAAACTCTGACGGGTTACGTTTCCTACGCCACGGAAGCTGCG
GATGGGGCCGTCAGGTCGGTTTCGGCATCGGTGACATCGGCCTCGGATTC
TCTGGCGGCCGCCATCGACTCGTTCACGACCTCCCCGCCCTCGGACGCTG
ACAGTAGCAAGAAGGGCAAGACCGCCGCAGCGTCCTCCAAGAAGAAGTCC
GCTGCTGCTGCTGCCAGCAAAAATAAGAAGAACAAGCAGACCGGCGGCAA
CAAAAAGAAGGGGGCTGCCGACGACGCCGGCGGTTCTTTCGCATTTGCGG
AGACTTTCGCAGCGTACGCGGAGACGGCGCGCGTTGCGGCGGCGGACGCG
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