mRNA_D-herbacea_F_contig1.101.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.101.1
Unique NamemRNA_D-herbacea_F_contig1.101.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:2666935..2669462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D7FUD5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-03_000660.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size338
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.101.1prot_D-herbacea_F_contig1.101.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 2666941..2669462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927396.2034836-UTR-D-herbacea_F_contig1:2666934..26669401622927396.2034836-UTR-D-herbacea_F_contig1:2666934..2666940Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2666935..2666940 +
1690790146.3938382-UTR-D-herbacea_F_contig1:2666934..26669401690790146.3938382-UTR-D-herbacea_F_contig1:2666934..2666940Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2666935..2666940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927396.219256-CDS-D-herbacea_F_contig1:2666940..26670741622927396.219256-CDS-D-herbacea_F_contig1:2666940..2667074Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2666941..2667074 +
1690790146.4057128-CDS-D-herbacea_F_contig1:2666940..26670741690790146.4057128-CDS-D-herbacea_F_contig1:2666940..2667074Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2666941..2667074 +
1622927396.2311234-CDS-D-herbacea_F_contig1:2668512..26686451622927396.2311234-CDS-D-herbacea_F_contig1:2668512..2668645Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2668513..2668645 +
1690790146.4138904-CDS-D-herbacea_F_contig1:2668512..26686451690790146.4138904-CDS-D-herbacea_F_contig1:2668512..2668645Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2668513..2668645 +
1622927396.244387-CDS-D-herbacea_F_contig1:2669399..26694621622927396.244387-CDS-D-herbacea_F_contig1:2669399..2669462Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2669400..2669462 +
1690790146.4234931-CDS-D-herbacea_F_contig1:2669399..26694621690790146.4234931-CDS-D-herbacea_F_contig1:2669399..2669462Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2669400..2669462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.101.1

>prot_D-herbacea_F_contig1.101.1 ID=prot_D-herbacea_F_contig1.101.1|Name=mRNA_D-herbacea_F_contig1.101.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=110bp
MREAAGGGEGVGGGVQAFQEEQWNVSVSSERDDYKEPWLREGAWMHNGRG
NGSNDDRVVDAVVAGDTRAIEAFLTRGGDVDTRDSRIGMTLLGWAARRGH
LDMVQLLLGR
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mRNA from alignment at D-herbacea_F_contig1:2666935..2669462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.101.1 ID=mRNA_D-herbacea_F_contig1.101.1|Name=mRNA_D-herbacea_F_contig1.101.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2528bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2666935..2669462+ (Desmarestia herbacea DmunF female)
GAAGGCATGAGAGAAGCGGCAGGAGGAGGAGAAGGAGTTGGAGGCGGGGT
TCAGGCGTTTCAGGAAGAGCAGTGGAACGTGTCGGTTTCGTCAGAGAGAG
ATGACTACAAGGAGCCATGGCTTCGAGAAGGGGCGTGGATGTGAGTTATT
ATGCTACCGTAACGTTAAAAAAGAATATACATGGTATATGTTATTTTATC
CCGATGTGGGTACACCCCATGTTGCCTCCGAAAGGGACGGGGGCAGGGGT
ATAGTCTAGTCTACACCCGCAGCGCCAATATCACGGCCCAAAAAACGCGA
CCGTTCTTCGTCAAATCGCGATGCCTTGCCCTTCCGCGCTTCATTCAGGA
AGGTTTAGCGTTTGTTTTTTTTGTAGGACGGATCTTTACGGAGGTTTTGA
CTTGCTATTAGTATAGGTGGTAGAATTTTCCGAACTGTTGAATAGCCCAC
GTTGTCAACCATTGTTGTTTTTTTTTGTTTTTTTTTCGTCCCATTTATTA
TCTTGCGCCCCATTCTTTCTCTAGGTCCATCTCTCTTCGTAACTCAGATC
CGGGGTCACATAGTAGGCGCTCCTCCCCCCTCCCCACTACGGTACATGCC
TATATTTTTATCGCGACAAGAATAGAAGATATATATATATATATACTTAG
TATTGTTTACGAGTCACTTGCATACAAACGTTGGGTCAGAAAGCCATGCA
AACCAATACCCAACTGCCGGTATATGCTGTCGGTATGCAATATACAACAC
CACCAACTGTTGGTATATCCCGTCGGTTGGCCATGCAAAAATTTCCAAGC
TGTCGGTACAGCATATCGTCGGTAAACAACACACCCCGCCTCGCCCCGCC
CTTGTGGCAAGAGGCCGAAGACAGCAGTAGAACGCATGTAGTGGGAGCAT
GTTAACTACTGCTGGAGGAGATGAGGAAAACAGGCAGAATGTGACATGAA
GTTTGGCACACTAGATAATAGCGAGAAAATGATACGCTTTTTTTTTCTTT
TTCTTTTTTCTCCATCCCATTTATTATCTTCGCCCTAGTCTTTCTCTAGC
TCATTCTCTCTTCGTAACTCAGATCCGGGGTCACATAGTAGGCGCTCCTC
CCTCCTTCCCACTACGGTACGTGCCTACATTTTTATCGCGAGAAGAGTGC
AGCACTTTCTTCCCTCGTCGACTTTCATCGAATTGTGCTTACTCACGCTC
TTCTTGCGTTTTCCGCGACGGAAAATGACTCAGAAAAGTGCCACCGGGAA
TCGAACCCCCAACTTCCGCCAACAGAGGCAACACCCTAGCCATTACACCA
CTGGGCCACCCCCCTATATACGCTATCCTAAGGATATTGGCCACAAAAAA
GCGAAGCAGGAAGGGCATAAGATAGGCAAAAGGTTTTGATGTAAGATATG
GTAAAGACGTAAGAGCGCCAAAATGTTGGAGTATGTCTCTATTAGGAGTA
GGAGCGGTGATCCGTCTCGAAAGGGATGCGTGGACAACGGTCAAATGACT
AAGGCAAGCAACAACAAATGAGCCCCCCCCCCCCCCATCCCGATCTGTCG
ATATATCTGATCCTTGAATCGCATGCAGGCACAATGGAAGGGGAAACGGA
AGCAACGACGATCGAGTGGTTGACGCGGTGGTGGCCGGGGATACCCGAGC
TATAGAGGCGTTCTTGACAAGGGGCGGGGACGTGGACACTCGAGACTCTA
GGATAGGCATGGTAAGCGGGCAGGCCAGCACTATTATTAGCACACACGTT
TTTTTTGCGATTTGGTGTTATTTATGATGTAGCTTGTGACCGCGGAATTT
CGTATACCTCTTAGGATGGAAGAGATCAGTACGGACTCTGAGTAGTACGC
TGCTGGGTGCCGTAGGGTAGGAAGGAGGTGTGTTAAATGTGAAGACAACA
ACAACAACAACAACAACAACAACAACATTATCGTCTCCTACGAAAGTGAA
AATTTATTAATGTCTTGAATTATTAATAGTATGAATAAATAATTAATTTT
TTTGGCGTGTCATACTTATTAATAGAATTTCTACCTACTACCTACTAACT
ACCACTACTACTACACGGCAACTATTATACCTCTACAGTAGTATATACCT
GGTATTATTTTACGATATCGACCTGATGTTTATGGACGTTATTATTGTGT
GGTCGTTAGATTAGAGTTAACGGTCAGTCTCTCTAAGAAATCGTTCCGAA
CCGCTGTGGAACAGGTGGAAATCAGGAAAAATAAAAATATTTGGCACCCT
CAGGCTGATTTTTTTTATTTTTTCGGTTTCGTTTTCGTGCGTACATGATA
TCGCGACCCACTATCATACGTAGTATCGAGTTTTTTTTTTTTTTTTTTTA
CAAAGCGCTCGTTTTTTTTTTTTTTTATCGTCATTTCTTTTCTTCTTTTT
TTTGTATTATTTAAAGATAGAATTGGCTTTTTTTTTTTTTTTTTTTGACG
TGTTCAACGCTTAAGACCCTGCTCGGGTGGGCGGCGCGAAGGGGACACCT
GGACATGGTTCAGCTCTTGCTCGGCCGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:2666935..2669462+

>mRNA_D-herbacea_F_contig1.101.1 ID=mRNA_D-herbacea_F_contig1.101.1|Name=mRNA_D-herbacea_F_contig1.101.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=660bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2666935..2669462+ (Desmarestia herbacea DmunF female)
ATGAGAGAAGCGGCAGGAGGAGGAGAAGGAGTTGGAGGCGGGGTTCAGGC
GTTTCAGGAAGAGCAGTGGAACGTGTCGGTTTCGTCAGAGAGAGATGACT
ACAAGGAGCCATGGCTTCGAGAAGGGGCGTGGATATGAGAGAAGCGGCAG
GAGGAGGAGAAGGAGTTGGAGGCGGGGTTCAGGCGTTTCAGGAAGAGCAG
TGGAACGTGTCGGTTTCGTCAGAGAGAGATGACTACAAGGAGCCATGGCT
TCGAGAAGGGGCGTGGATGCACAATGGAAGGGGAAACGGAAGCAACGACG
ATCGAGTGGTTGACGCGGTGGTGGCCGGGGATACCCGAGCTATAGAGGCG
TTCTTGACAAGGGGCGGGGACGTGGACACTCGAGACTCTAGGATAGGCAT
GGCACAATGGAAGGGGAAACGGAAGCAACGACGATCGAGTGGTTGACGCG
GTGGTGGCCGGGGATACCCGAGCTATAGAGGCGTTCTTGACAAGGGGCGG
GGACGTGGACACTCGAGACTCTAGGATAGGCATGACCCTGCTCGGGTGGG
CGGCGCGAAGGGGACACCTGGACATGGTTCAGCTCTTGCTCGGCCGAACC
CTGCTCGGGTGGGCGGCGCGAAGGGGACACCTGGACATGGTTCAGCTCTT
GCTCGGCCGA
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