mRNA_D-herbacea_F_contig1.100.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.100.1
Unique NamemRNA_D-herbacea_F_contig1.100.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:2664564..2666913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size755
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.524616-CDS-D-herbacea_F_contig1:2664563..26646901622927380.524616-CDS-D-herbacea_F_contig1:2664563..2664690Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2664564..2664690 +
1690790135.3605406-CDS-D-herbacea_F_contig1:2664563..26646901690790135.3605406-CDS-D-herbacea_F_contig1:2664563..2664690Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2664564..2664690 +
1622927380.535251-CDS-D-herbacea_F_contig1:2666287..26669131622927380.535251-CDS-D-herbacea_F_contig1:2666287..2666913Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2666288..2666913 +
1690790135.3710835-CDS-D-herbacea_F_contig1:2666287..26669131690790135.3710835-CDS-D-herbacea_F_contig1:2666287..2666913Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2666288..2666913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.100.1prot_D-herbacea_F_contig1.100.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 2664564..2666913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.100.1

>prot_D-herbacea_F_contig1.100.1 ID=prot_D-herbacea_F_contig1.100.1|Name=mRNA_D-herbacea_F_contig1.100.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=251bp
GLGGLPVRPKSSILRQSSGDLMSLCTARDLSALGKRAGNGNSVGTACPGR
EADTALTSRGRESVENSRQIPDGVKADSPSGGPGNYHPPIRRAPKNGSNS
IFLVDGRSVAGCGGGIRVPGDGVVAKRPSTPVRNGKISSERSSECSSLLM
AENNGAAGVAARPLEKSQEEGKPEILLPPGLPPSAAVEIPGDDGGGAPEN
VDPLLVSKEEVVGKNRLSPSLVPAGVRDESSSDYGARGEAPLTAGFVEQG
G
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mRNA from alignment at D-herbacea_F_contig1:2664564..2666913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.100.1 ID=mRNA_D-herbacea_F_contig1.100.1|Name=mRNA_D-herbacea_F_contig1.100.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2350bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2664564..2666913+ (Desmarestia herbacea DmunF female)
GGGCTTGGAGGGCTTCCCGTCAGACCGAAGTCGTCGATACTGCGGCAGAG
CAGCGGGGATCTCATGTCACTCTGCACCGCCCGGGACTTGTCGGCGCTGG
GGAAGAGAGCCGGTAATGGCAATTCTGGTCAGTGAGCGGGACCTTTTATT
ATTTTGGCACACACGATAAATATCGTCTCTTTCGAAACTGAACGTTAATT
CATTCAAACAATTATTATTATACATGAATAGTATGGATCATAATATCTGT
CTGTACGGTGTCTTGTCCATGACACTAACTACTTGAATAATGTATGGGAT
TTCGTCCCTTTACTGTCCCCGGGGTACCCGGACTCGGAACGCCTCCGGTA
AACCAGAGGACCTATGTAGACGTTACATCTATACTTGAATATCATACGTA
CGAATAGGTACAGTAGTAGTATGTCGCAGGATACGTAGACGCTACATCTA
TGTATCATAGTTACGAAATACATACAACAGTAGTAGTAGTAGTAGTAGTA
GTGTGCATGACGGTAGATCTGTGATGAAACGCGTGCTTTTTTAACTCTTT
AGTTACGGGTGCTGTGCTTCTGCGGTTACATTTGGTGTATCCCGTGCCCG
GCAAATGTTTTTAGTGACACAAAGGCATAGGTAGGCAACTGGCGCAAGTG
TACGTTCATACACGGGCCTCTATGTTATTGTAGTATTAATAATGAGGCGC
GCGAGCGAAGCGAGCCTTTTTTCCCTTGATTTTTAACCAAGGAAAAAAAA
GCCTCTTCGTAGCGGCTCGGATACGAGGGTAGGGTGCCTTGGTTTGAGTG
TGTGTGTGATTCAACATTGTTTTGGTCCACGTTTCACCACCGCGCTCGAC
GCATACGTCACCAAATCCAGTCCCCGCGGGCTCTGTGCACGCACACACAC
GAAAGACACTTTCTCGTCCTGGTGGGGTGGAAAGTCATTCACAGTTGGTC
GAGCTAGGTGCGGCAACGTGTGTAGGCACATGTCTGTGATGTCTGTGCTT
TTTTTTTTTTTTTTTTTGTAAGTAAAAAAAAATCGCAGATTTGACTACTG
CAGGTGTGTTGAGGTCGCGCCTCATTACCACCAATTACTAGTAGTTTATA
GTGGTGAAGGGCTGGGGTTTGCGTTAGGTTTTTGCCTTTTTTGCTCAGTA
AGGAGAATTCGATGAAACTCGACTAGGGAAGAGATTGCTGCATCCTTCTC
GCGATAAAAATGTAGGCGCGTATCTTAGTGGGGAGGGTGGGAGGGGCGCC
TGCTACGGGCCCCCCGGATCTGAGTATTTACGAAGAGAGATGGAGGTGGA
CAAATAATAGAGCAAAGACAATAGATGGGACGGAAACAAAAAAAGGGAGA
GATAATTACACCGCGGCGCCGCTTGATTTTGTTTTAAGGAGGCTGCTGGT
TCTTTAAGGCACCCCTCGTCCCTCATTCCCCGCTTTATATTGCCCATTAA
ATACGCTTGTTTGTAGAATACAACGTTGTCTTTTTTGCAGCGCGATAGCC
TCGGGCACCATAGCCCACGAAGACAGCCACCCGGAGAGGTAACAGTGAAC
GTTGCCCCCCCGGGGCTAGCGTAGGACGTGCCGATGCTCACCCACTTGCA
AAAACCCAGATTAGTACGCCTTTCCCGCCGGGCCGGACTCGGTCCGGTTG
CGGTCCAGACTACTAACACCCCGTCTCGTCTCCCATTCCACGCCCTCCTT
CTTCTCGAATCGACAAATCAACAGTAGGCACGGCCTGCCCCGGGCGAGAG
GCCGACACCGCTCTGACGAGCCGGGGACGAGAATCCGTGGAAAATTCTCG
TCAAATTCCAGACGGAGTAAAAGCTGACAGTCCTTCCGGTGGGCCTGGCA
ATTATCACCCGCCCATCCGAAGAGCACCGAAGAACGGCAGCAATTCGATA
TTTTTAGTGGACGGCCGTAGTGTTGCAGGTTGCGGAGGAGGGATTCGTGT
GCCAGGGGACGGGGTGGTCGCGAAACGGCCCTCGACACCCGTGAGAAACG
GAAAAATCAGCTCGGAACGTTCTTCCGAATGTTCTTCGTTATTGATGGCC
GAGAATAATGGAGCGGCGGGCGTAGCAGCAAGACCGCTGGAGAAGAGCCA
GGAGGAAGGAAAACCTGAGATTTTGTTGCCGCCTGGCCTACCGCCGTCTG
CCGCTGTTGAAATCCCGGGCGACGACGGAGGGGGAGCACCGGAGAATGTA
GATCCCCTCCTTGTCTCCAAAGAGGAAGTTGTTGGCAAAAACAGGCTCTC
GCCGTCGCTTGTCCCTGCCGGTGTGCGCGACGAGAGTAGTAGTGATTACG
GGGCGCGCGGCGAAGCACCATTAACGGCGGGCTTTGTTGAGCAAGGTGGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:2664564..2666913+

>mRNA_D-herbacea_F_contig1.100.1 ID=mRNA_D-herbacea_F_contig1.100.1|Name=mRNA_D-herbacea_F_contig1.100.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1506bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2664564..2666913+ (Desmarestia herbacea DmunF female)
GGGCTTGGAGGGCTTCCCGTCAGACCGAAGTCGTCGATACTGCGGCAGAG
CAGCGGGGATCTCATGTCACTCTGCACCGCCCGGGACTTGTCGGCGCTGG
GGAAGAGAGCCGGTAATGGCAATTCTGGGGCTTGGAGGGCTTCCCGTCAG
ACCGAAGTCGTCGATACTGCGGCAGAGCAGCGGGGATCTCATGTCACTCT
GCACCGCCCGGGACTTGTCGGCGCTGGGGAAGAGAGCCGGTAATGGCAAT
TCTGTAGGCACGGCCTGCCCCGGGCGAGAGGCCGACACCGCTCTGACGAG
CCGGGGACGAGAATCCGTGGAAAATTCTCGTCAAATTCCAGACGGAGTAA
AAGCTGACAGTCCTTCCGGTGGGCCTGGCAATTATCACCCGCCCATCCGA
AGAGCACCGAAGAACGGCAGCAATTCGATATTTTTAGTGGACGGCCGTAG
TGTTGCAGGTTGCGGAGGAGGGATTCGTGTGCCAGGGGACGGGGTGGTCG
CGAAACGGCCCTCGACACCCGTGAGAAACGGAAAAATCAGCTCGGAACGT
TCTTCCGAATGTTCTTCGTTATTGATGGCCGAGAATAATGGAGCGGCGGG
CGTAGCAGCAAGACCGCTGGAGAAGAGCCAGGAGGAAGGAAAACCTGAGA
TTTTGTTGCCGCCTGGCCTACCGCCGTCTGCCGCTGTTGAAATCCCGGGC
GACGACGGAGGGGGAGCACCGGAGAATGTAGATCCCCTCCTTGTCTCCAA
AGAGGAAGTTGTTGGCAAAAACAGGCTCTCGCCGTCGCTTGTCCCTGCCG
GTGTGCGCGACGAGAGTAGTAGTGATTACGGGGCGCGCGGCGAAGCACCA
TTAACGGCGGGCTTTGTTGAGCAAGGTGGCTAGGCACGGCCTGCCCCGGG
CGAGAGGCCGACACCGCTCTGACGAGCCGGGGACGAGAATCCGTGGAAAA
TTCTCGTCAAATTCCAGACGGAGTAAAAGCTGACAGTCCTTCCGGTGGGC
CTGGCAATTATCACCCGCCCATCCGAAGAGCACCGAAGAACGGCAGCAAT
TCGATATTTTTAGTGGACGGCCGTAGTGTTGCAGGTTGCGGAGGAGGGAT
TCGTGTGCCAGGGGACGGGGTGGTCGCGAAACGGCCCTCGACACCCGTGA
GAAACGGAAAAATCAGCTCGGAACGTTCTTCCGAATGTTCTTCGTTATTG
ATGGCCGAGAATAATGGAGCGGCGGGCGTAGCAGCAAGACCGCTGGAGAA
GAGCCAGGAGGAAGGAAAACCTGAGATTTTGTTGCCGCCTGGCCTACCGC
CGTCTGCCGCTGTTGAAATCCCGGGCGACGACGGAGGGGGAGCACCGGAG
AATGTAGATCCCCTCCTTGTCTCCAAAGAGGAAGTTGTTGGCAAAAACAG
GCTCTCGCCGTCGCTTGTCCCTGCCGGTGTGCGCGACGAGAGTAGTAGTG
ATTACGGGGCGCGCGGCGAAGCACCATTAACGGCGGGCTTTGTTGAGCAA
GGTGGC
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