mRNA_D-herbacea_F_contig1.1.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.1.1
Unique NamemRNA_D-herbacea_F_contig1.1.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:17815..18726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.1.1prot_D-herbacea_F_contig1.1.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 17868..18590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927378.8525975-UTR-D-herbacea_F_contig1:17814..178671622927378.8525975-UTR-D-herbacea_F_contig1:17814..17867Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 17815..17867 -
1690790130.8632147-UTR-D-herbacea_F_contig1:17814..178671690790130.8632147-UTR-D-herbacea_F_contig1:17814..17867Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 17815..17867 -
1622927379.6511736-UTR-D-herbacea_F_contig1:18590..187261622927379.6511736-UTR-D-herbacea_F_contig1:18590..18726Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 18591..18726 -
1690790134.5628142-UTR-D-herbacea_F_contig1:18590..187261690790134.5628142-UTR-D-herbacea_F_contig1:18590..18726Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 18591..18726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927379.3327773-CDS-D-herbacea_F_contig1:17867..180631622927379.3327773-CDS-D-herbacea_F_contig1:17867..18063Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 17868..18063 -
1690790134.3497806-CDS-D-herbacea_F_contig1:17867..180631690790134.3497806-CDS-D-herbacea_F_contig1:17867..18063Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 17868..18063 -
1622927379.6411653-CDS-D-herbacea_F_contig1:18564..185901622927379.6411653-CDS-D-herbacea_F_contig1:18564..18590Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 18565..18590 -
1690790134.5471022-CDS-D-herbacea_F_contig1:18564..185901690790134.5471022-CDS-D-herbacea_F_contig1:18564..18590Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 18565..18590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.1.1

>prot_D-herbacea_F_contig1.1.1 ID=prot_D-herbacea_F_contig1.1.1|Name=mRNA_D-herbacea_F_contig1.1.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=74bp
MVGAYWRLRCKNNKKTVGKKAAESVSGVRRPSASVNTAYRETPQNAFRFP
PNGAAQAFLVLTATSKERVVVTL*
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mRNA from alignment at D-herbacea_F_contig1:17815..18726-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.1.1 ID=mRNA_D-herbacea_F_contig1.1.1|Name=mRNA_D-herbacea_F_contig1.1.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=912bp|location=Sequence derived from alignment at D-herbacea_F_contig1:17815..18726- (Desmarestia herbacea DmunF female)
AGTGTGTGGTGGGCAAGCGAGGGGAGCCTCGGTTGCTTTGCGAGGAGCAG
CGTTCAAAACGGTGGATGTGCCATCCATGCCGCATTGATAAAACGCGCGG
CAACAGGTGTTCGAATTTTGTGCGCTGTGTGAGCCAATGGTGGGGGCGTA
CTGGCGTCTCAGGTAAGCTCCTGGAGTATCGGGGGGTTCTTCGCGCTTTG
GCGTTCGTTTTCGCAACTGCAATACCATTTCTGTGTAGTAGGAAACGCAT
GTTGGCTCCCAAGCATTAGGCCAATGATATATTGATAGTGAAGGAACGGA
AGTGTTAAAATTTGTGCACGCCACGCAGCGAGAGTGTTTTGCTTAGCTTT
GACAGCACAGTTGAAAACCTTGTTTCCGCCGCCAAAACAATGTCCACTTT
ATTTATCCTTACACACACAAAATATTTTGGGGCACGTACTTTGGTAGTCA
AAAAAATATCTATGCGATGGATATCGACTTGTGGACAAAATTAAACATGG
TATCGAATTCCTGGGTTATAAGAAATCTGCTGTCGTATGTACGTGAATTT
CATGAAACTTGCTGCGTTGAAAATACACATGTTTTTTTTCCAACTCAGAT
GTTGCAACCCCGACATACTCTCTCTCTATCTTCGCCCCGCCCCTTTAACA
TTTTCCTGTACAGATGCAAAAATAATAAGAAGACAGTCGGTAAAAAGGCG
GCCGAGTCGGTGTCTGGCGTACGACGACCAAGTGCCAGCGTAAATACAGC
CTACCGCGAAACCCCTCAGAATGCCTTCAGATTCCCGCCGAATGGTGCTG
CTCAGGCGTTCTTGGTTTTGACTGCGACGAGCAAGGAACGCGTGGTCGTT
ACACTTTGAGGAGACGGGAGTAGGCTTCGCCCACGCTGTTTAGGCTCGTG
TGTATGCTCTTT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:17815..18726-

>mRNA_D-herbacea_F_contig1.1.1 ID=mRNA_D-herbacea_F_contig1.1.1|Name=mRNA_D-herbacea_F_contig1.1.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=444bp|location=Sequence derived from alignment at D-herbacea_F_contig1:17815..18726- (Desmarestia herbacea DmunF female)
ATGGTGGGGGCGTACTGGCGTCTCAGATGGTGGGGGCGTACTGGCGTCTC
AGATGCAAAAATAATAAGAAGACAGTCGGTAAAAAGGCGGCCGAGTCGGT
GTCTGGCGTACGACGACCAAGTGCCAGCGTAAATACAGCCTACCGCGAAA
CCCCTCAGAATGCCTTCAGATTCCCGCCGAATGGTGCTGCTCAGGCGTTC
TTGGTTTTGACTGCGACGAGCAAGGAACGCGTGGTCGTTACACTTTGAAT
GCAAAAATAATAAGAAGACAGTCGGTAAAAAGGCGGCCGAGTCGGTGTCT
GGCGTACGACGACCAAGTGCCAGCGTAAATACAGCCTACCGCGAAACCCC
TCAGAATGCCTTCAGATTCCCGCCGAATGGTGCTGCTCAGGCGTTCTTGG
TTTTGACTGCGACGAGCAAGGAACGCGTGGTCGTTACACTTTGA
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