mRNA_D-dudresnayi_contig10445.485.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10445.485.1
Unique NamemRNA_D-dudresnayi_contig10445.485.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10445.485.1 vs. uniprot
Match: D7FHG5_ECTSI (Ubiquitination factor E4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG5_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 5.820e-36
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    1 IVFGDGVSGLQMRAADQSLTEEERADARQEGEQGGRSAKYCLKEAKLLLRMLAYLSESIKDAFMVDELRARIAEMLGYFLDHLVGKKSKDLK 276
            + F   +   Q RAADQSL+EE+RA AR+E E  GRSAKYCLKEAKLLLRMLAY+SESIKDAFMVDELRARIA+MLGYFLDHLVG+KSKDLK
Sbjct:  559 VKFLSAIKAAQARAADQSLSEEDRAAAREEAEHSGRSAKYCLKEAKLLLRMLAYMSESIKDAFMVDELRARIAQMLGYFLDHLVGRKSKDLK 650
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10445.485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHG5_ECTSI5.820e-3678.26Ubiquitination factor E4 n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10445contigD-dudresnayi_contig10445:7831..10044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue2.3e-31
Seed eggNOG ortholog2880.D7FHG5
Preferred nameUBE4A
KEGG koko:K10596,ko:K10597
KEGG Pathwayko04120,ko04141,map04120,map04141
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0030433,GO:0032446,GO:0032991,GO:0033554,GO:0034450,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1990234
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGsCOG5113@1,KOG2042@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.040743-CDS-D-dudresnayi_contig10445:7830..79951622927546.040743-CDS-D-dudresnayi_contig10445:7830..7995Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10445 7831..7995 -
1690556801.3539834-CDS-D-dudresnayi_contig10445:7830..79951690556801.3539834-CDS-D-dudresnayi_contig10445:7830..7995Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10445 7831..7995 -
1622927546.051309-CDS-D-dudresnayi_contig10445:9912..100441622927546.051309-CDS-D-dudresnayi_contig10445:9912..10044Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10445 9913..10044 -
1690556801.3630245-CDS-D-dudresnayi_contig10445:9912..100441690556801.3630245-CDS-D-dudresnayi_contig10445:9912..10044Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10445 9913..10044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10445.485.1prot_D-dudresnayi_contig10445.485.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10445 7831..10044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10445.485.1

>prot_D-dudresnayi_contig10445.485.1 ID=prot_D-dudresnayi_contig10445.485.1|Name=mRNA_D-dudresnayi_contig10445.485.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=99bp
IVFGDGVSGLQMRAADQSLTEEERADARQEGEQGGRSAKYCLKEAKLLLR
MLAYLSESIKDAFMVDELRARIAEMLGYFLDHLVGKKSKDLKARAGKG*
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mRNA from alignment at D-dudresnayi_contig10445:7831..10044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10445.485.1 ID=mRNA_D-dudresnayi_contig10445.485.1|Name=mRNA_D-dudresnayi_contig10445.485.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2214bp|location=Sequence derived from alignment at D-dudresnayi_contig10445:7831..10044- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTGTGTTCGGTGATGGTGTGTCGGGATTGCAGATGCGAGCGGCAGATCA
GTCGTTAACGGAGGAGGAGAGAGCGGATGCGCGGCAGGAGGGAGAGCAGG
GTGGCCGAAGCGCCAAGTACTGCCTCAAGGAGGTAAGCAACAGGACCCCC
CGCGGATGGGAATCGAGGATGCACACACACACACACACACCCCTCCCCCC
CCAACGACGGATTTTTGAGCGCTTACCGAGGTTTTTTAGACATGGAGAAA
TTTGAGTGTTGAAACGTGAAGGCAGGTGGAGGGACACCGAGGTGGAGTGA
TTACACGAGGAGCAGCGAGAAGCAACATAGTATTTGGGCTGGACTGAATG
TCACATGTAATACACGAGCATTCCCACACTGTGCAAAACTTGAGGAATAG
CTTCTGGTACCGCCGAAGAATCGTTGCCCTTCAAAACATTTCTCCCTTTC
TCTTTCGCTTGACCTCCTTCGCTTTTACACCCACCAGACATGACCCCAGG
CGTAGCCTACGGTTGGGTGGTACTACTATGTACTACTGTTGTACAGAGAC
TACTACTGTGCGGTACTATTGACTGTAACACAGCATACTATACGTATGAT
AGTATAGTGTTAGTACAGTTAGTAGAGCTTAGTGTACGATATGTCATGCA
AACCCCGGGGATACTAGAGTACTGTCACCGCCCTCCCCCCCCTAGCCCCG
ATTTTGGCCTATCGAGGTTTGTGGGATGTGCGTCTCATCTAACAAACCGC
GGGGCCCCTCGTAAACAAGTGATACAGGTTTCTACGGAGTGTTGGCAGGG
GTGTTTTCGGGAGGTCTTTGTTGGGCGTTGGTTGGGTTGGGCGGTAGGTT
TAACGGTGTTGTAGGACGGAAATTTACGGGACCTTTACATAGGTTTCGAT
TCTCTACTGCCATCATAGTAGTGCGTTCGTTAGGGTTCGGGTTAGGAGTT
ATGGCGTTGGTAGGTAGAATTTTCCGAAACTGCTGGAACAGCCCACGTTG
TTAACTAATCATTGAAGTAAAGCGAACATCCTCAAAGATCCGACCTATAA
AAATGCTAAAGGCGGCTCGGTTAGCAAGTTGATACAGGTTTCTACGAAGT
GTTGGAAGGGATATTTTTGGGAGGTATTTAGGGTGTGGGTGTGGGTTAGG
GTTGAGGTTGGTTGTAGGAATTTTCGTGTCTGCCTGCCTGCCTGCCTGCC
TGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCCAGTAC
AGTAGACGTTCCAACATGTTCGGGGACTGGCTCTGTTTTTTTTAATTTTT
TTTTTTACTTGCTGTTATTACTTGTTATTAGTATGGTGTGGTCGTTAGGT
TAGGGTTAGGGTTAGGGTTAGTCCTAGAAGCAGATCCGAACTGCTGAACA
GCCTACGGTTGATATGCTATTAGTTTAATATAAACGAAGATCCTAGAGAT
TCCTCGCGATGGGCTAAGGATTTTCGAGAGCAGTTGCCAGGAGTCTCAAC
TCCCAACACATTTTGGATGATGATTTTGCGAAGCAATTTAAATCAATCGC
GCGCGTCTAGCGCGAGCGGCACGTTTTTTCACACGCACCTGTGTCTGAAC
AAACAGGGTGTATTCGGCAATCGATCAAACAATAAATAAATAAATAAATC
GGTGGCGTGAAAATGCCGCGCTGTTCGTGGAACTCCCTCCCCCCGAGGTG
TCAAAATCCGCCTCACAAGGGGTTCTTAGTAGGATGCAGCTCACCTTCCA
TGCGAATCGCCGAACACCTCACGGCGCTTCGCGCTTGGTGCACGCGGTTT
TCTGCCTGGTCGGTGAAAACCCGACGTGCTCCGTCCCGGCATTGTAGGGA
TGCGAGGTTCTATGGTCGTACGACTACGGCCATGCATGAAATGAGCACAC
ACACACACACACACACACACACCATCCCCCTACATAAACACGCCTCCTGA
GACACACGATCACGCGTACGTATAAAACTCCTATGTTAATGTGAAAGAGA
GGGCCTCACCACCGCCATGTTGTATACTTGTGTGTGTGTGTGTGTTCAGG
CGAAGCTTTTGTTGCGCATGCTGGCGTATCTGAGTGAGAGCATCAAGGAC
GCTTTCATGGTGGACGAGCTGAGGGCGCGCATCGCCGAGATGCTGGGGTA
TTTCCTGGACCATCTCGTTGGAAAAAAGAGCAAGGATCTCAAGGCAAGGG
CGGGGAAGGGTTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10445:7831..10044-

>mRNA_D-dudresnayi_contig10445.485.1 ID=mRNA_D-dudresnayi_contig10445.485.1|Name=mRNA_D-dudresnayi_contig10445.485.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at D-dudresnayi_contig10445:7831..10044- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTGTGTTCGGTGATGGTGTGTCGGGATTGCAGATGCGAGCGGCAGATCA
GTCGTTAACGGAGGAGGAGAGAGCGGATGCGCGGCAGGAGGGAGAGCAGG
GTGGCCGAAGCGCCAAGTACTGCCTCAAGGAGATTGTGTTCGGTGATGGT
GTGTCGGGATTGCAGATGCGAGCGGCAGATCAGTCGTTAACGGAGGAGGA
GAGAGCGGATGCGCGGCAGGAGGGAGAGCAGGGTGGCCGAAGCGCCAAGT
ACTGCCTCAAGGAGGCGAAGCTTTTGTTGCGCATGCTGGCGTATCTGAGT
GAGAGCATCAAGGACGCTTTCATGGTGGACGAGCTGAGGGCGCGCATCGC
CGAGATGCTGGGGTATTTCCTGGACCATCTCGTTGGAAAAAAGAGCAAGG
ATCTCAAGGCAAGGGCGGGGAAGGGTTAGGCGAAGCTTTTGTTGCGCATG
CTGGCGTATCTGAGTGAGAGCATCAAGGACGCTTTCATGGTGGACGAGCT
GAGGGCGCGCATCGCCGAGATGCTGGGGTATTTCCTGGACCATCTCGTTG
GAAAAAAGAGCAAGGATCTCAAGGCAAGGGCGGGGAAGGGTTAG
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