mRNA_D-dudresnayi_contig10426.463.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10426.463.1
Unique NamemRNA_D-dudresnayi_contig10426.463.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: D7G1T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T3_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 3.700e-55
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = 3
Query:   33 GRVSAEGGGDDGVAGHVETWEFSGLMGEDDSGTWVASQNVHGLDILIKDDLRVWADGLWVNDRGFDREGNFVYGNQRGVPYKMRRVVPDGPLQWTLGERQRTQEKYAEKMAAIGVIPGQRCGPPI 407
            G V   G G+D   G  ++  F GLMGEDDSGTWV SQNV GL+IL+KDDLR+W D LWVNDRGFDR+GNFVYGNQR VPYKMRRV   GPL+WTLG R RT++ YAE+M+AIGV PGQR GPP+
Sbjct:   16 GAVPERGAGEDAAGGGGKS--FVGLMGEDDSGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAERMSAIGVTPGQRLGPPV 138          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 4.080e-54
Identity = 98/179 (54.75%), Postives = 112/179 (62.57%), Query Frame = 3
Query:    3 MFGCEIYWRR-------------------------GRVSAEGGGDDGVAGHVETWEFSGLMGEDDSGTWVASQNVHGLDILIKDDLRVWADGLWVNDRGFDREGNFVYGNQRGVPYKMRRVVPDGPLQWTLGERQRTQEKYAEKMAAIGVIPGQRCGPPIPSRKPSIATAGDVRGPGGG 464
            MFGCEIYW R                         G V   G G+D   G  ++  F GLMG+DDSGTWV SQNV GL+IL+KDDLR+W D LWVNDRGFDR+GNFVYGNQR VPYKMRRV   GPL+WTLG R RT++ YAEKM+AIGV  GQR  PP+      +A      G GGG
Sbjct:  249 MFGCEIYWGRHQAGGEDEKSMPGGISGPGKQDANGGAVPERGAGEDAAGGGGKS--FVGLMGKDDSGTWVESQNVDGLEILVKDDLRLWPDSLWVNDRGFDRDGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAEKMSAIGVTLGQRLRPPV-----RVAAPAGTGGTGGG 420          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: A0A7S2A9U5_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9U5_TRICV)

HSP 1 Score: 85.5 bits (210), Expect = 2.120e-16
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  135 VASQNVHGLDILIKDDLRVWADGLWVNDRGFDREG-NFVYGNQRGVPYKMRRV----------------------VPDGPLQWTLGERQRTQEKYAEKMAAIG 374
            V S  + G  I ++D+L +W   LW+NDRG+D EG +FVYGNQRGVPY+M RV                      V +G L+WTLG R RT+  Y E++ AIG
Sbjct:   92 VPSLMIPGAKIRVRDELSLWDGALWINDRGYDPEGGDFVYGNQRGVPYEMGRVTTFLRGDGDGEGSPPLFATERTVVNGDLKWTLGPRHRTEGLYRERVEAIG 194          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC)

HSP 1 Score: 84.0 bits (206), Expect = 4.510e-15
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  135 VASQNVHGLDILIKDDLRVWADGLWVNDRGFDREG-NFVYGNQRGVPYKMRRV----------VPDGPLQWTLGERQRTQEKYAEKMAAIG 374
            V SQ + G  ILIKD L +W D LW++DRGFD +   F+YGNQRGVPY++ RV          +    L WTLG   R++ +Y +KM A+G
Sbjct:  218 VESQMMPGQKILIKDQLSLWPDELWIHDRGFDPDTMRFIYGNQRGVPYRLERVTDIALNNGRTIVQEDLAWTLGPDFRSEGEYQDKMVAVG 308          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: A0A7S1XBU0_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBU0_9RHOD)

HSP 1 Score: 83.6 bits (205), Expect = 7.490e-15
Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = 3
Query:    3 MFGCEIYWRRGRVSAEGGGDDGVAGHVETWEFSGLMGEDDSGTWVASQNVHGLDILIKDDLRVWADGLWVNDRGFDREGNFVYGNQRGVPYKMRRVVPDGPLQWTL 320
            + GCE++W +G        D  V G      F G M  +  G  V S+ + G+ I IKDDL +    LWVNDRGF   G++VYGN+RG+ YKM+RV+P   L WT+
Sbjct:  229 LEGCEVFWYKG--------DGNVEGLNHQPHFIGYM--EGGGCSVFSREIQGM-IHIKDDLIMTQKDLWVNDRGFTDNGDYVYGNRRGIHYKMQRVLPGDELWWTV 323          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: A0A7S2SCY1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCY1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.070e-14
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  123 SGTWVASQNVHGLDILIKDDLRVWADGLWVNDRGFDREG--NFVYGNQRGVPYKMRRV--------------VPDGPLQWTLGERQRTQEKYAEKMAAI 371
            +GT VASQ + G+ I I+D+L +W +  W+NDRG D +   +F+YGNQRG+PYK++RV              + D  L WTLG   RT+  Y + M  I
Sbjct:  156 NGTTVASQVIPGMYINIRDELSLWKNEFWINDRGLDPQNVSSFIYGNQRGIPYKLKRVTQNNNIFRQWKPRMIHDPKLAWTLGPDHRTEFDYQQMMNEI 254          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: A0A5J4Z4Z5_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4Z5_PORPP)

HSP 1 Score: 80.9 bits (198), Expect = 1.420e-13
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 3
Query:    3 MFGCEIYWRRGRVSAEGGGDDGVAGHVETWEFSGLMGEDDSGTWVASQNVHGLDILIKDDLRVWADGLWVNDRGFDREGNFVYGNQRGVPYKMRRVVPDGPLQWT 317
            + GCE++W R +       +      +  + F G M     G  V S  +    IL+KDDL +  + LWVNDRGFD  G+FVYGN+RGVPYKM+R   +  L+WT
Sbjct:  379 LQGCEVFWERRKFKTAQALEQSEI--IGPFFFRGFMAG--GGCTVFSPTMKSR-ILVKDDLILTGNELWVNDRGFDENGHFVYGNRRGVPYKMKRTSCNPHLEWT 478          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC)

HSP 1 Score: 79.0 bits (193), Expect = 4.700e-13
Identity = 49/118 (41.53%), Postives = 60/118 (50.85%), Query Frame = 3
Query:   96 FSGLMGEDDSGTWVASQN-VHGLDILIKDDLRVWADGLWVNDRGFDREGN-----------FVYGNQRGVPYKMRRV-------------VP-DGPLQWTLGERQRTQEKYAEKMAAI 371
            F   M    SG  V S + + G  ILIKD+L +W D  W+NDRG+D +G            FVYGN+RGVPYK+ RV              P  G LQWTLG   RT  +Y  K+ AI
Sbjct:  272 FHATMEAGSSGAIVDSISMIPGQRILIKDELSLWEDKFWINDRGYDPDGETDSMNENQDMPFVYGNRRGVPYKLERVSHIVSTAGAELQVAPVSGELQWTLGGSYRTPGEYEAKLKAI 389          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: B8BPX0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPX0_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 1.040e-12
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  150 VHGLDILIKDDLRVWADGLWVNDRGFD-----REGN----------FVYGNQRGVPYKMRRV----------------VPDGPLQWTLGERQRTQEKYAEKMAAIGVIPGQR 392
            + G  ILIKD+L +W +  W+NDRG+D     +EG+          FVYGN+R VPYK+ RV                V +  L+WTLG+  RT E Y EK++A+ V  G++
Sbjct:  155 IPGKRILIKDELSLWEEEFWINDRGYDPDAIVKEGHTANDDSEGLPFVYGNRRLVPYKLARVSRMSTTCGGGVNLIRSVVNSELEWTLGDEYRTAELYQEKLSAVDVAFGKQ 266          
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Match: A0A7S4HD69_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HD69_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 2.310e-11
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 3
Query:  156 GLDILIKDDLRVWADGLWVNDRGFDREGNFVYGNQRGVPYKMRR 287
            G+ I+++DD+ +W+D LWVNDRG D EGN++YGN R VPYKM R
Sbjct:   92 GMPIVVRDDVTLWSDALWVNDRGADMEGNYLYGNVRDVPYKMDR 135          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10426.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G1T3_ECTSI3.700e-5568.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9Q8_9PHAE4.080e-5454.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2A9U5_TRICV2.120e-1643.69Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
B7G7Q1_PHATC4.510e-1546.15Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1XBU0_9RHOD7.490e-1542.45Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2SCY1_9STRA2.070e-1441.41Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A5J4Z4Z5_PORPP1.420e-1340.95Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
K0TER5_THAOC4.700e-1341.53Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BPX0_THAPS1.040e-1238.39Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4HD69_9EUKA2.310e-1161.36Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10426contigD-dudresnayi_contig10426:2607..3449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue2.2e-44
Seed eggNOG ortholog2880.D7G1T3
EggNOG free text desc.CpeT/CpcT family (DUF1001)
EggNOG OGs2CBDP@1,2SAUK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004240.1
Exons1
Model size843
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10426.463.1prot_D-dudresnayi_contig10426.463.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10426 2609..3073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.4100194-UTR-D-dudresnayi_contig10426:2606..26081622927542.4100194-UTR-D-dudresnayi_contig10426:2606..2608Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10426 2607..2608 +
1690556800.1235783-UTR-D-dudresnayi_contig10426:2606..26081690556800.1235783-UTR-D-dudresnayi_contig10426:2606..2608Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10426 2607..2608 +
1622927542.4339328-UTR-D-dudresnayi_contig10426:3073..34491622927542.4339328-UTR-D-dudresnayi_contig10426:3073..3449Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10426 3074..3449 +
1690556800.1491315-UTR-D-dudresnayi_contig10426:3073..34491690556800.1491315-UTR-D-dudresnayi_contig10426:3073..3449Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10426 3074..3449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.423196-CDS-D-dudresnayi_contig10426:2608..30731622927542.423196-CDS-D-dudresnayi_contig10426:2608..3073Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10426 2609..3073 +
1690556800.133475-CDS-D-dudresnayi_contig10426:2608..30731690556800.133475-CDS-D-dudresnayi_contig10426:2608..3073Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10426 2609..3073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10426.463.1

>prot_D-dudresnayi_contig10426.463.1 ID=prot_D-dudresnayi_contig10426.463.1|Name=mRNA_D-dudresnayi_contig10426.463.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=155bp
MFGCEIYWRRGRVSAEGGGDDGVAGHVETWEFSGLMGEDDSGTWVASQNV
HGLDILIKDDLRVWADGLWVNDRGFDREGNFVYGNQRGVPYKMRRVVPDG
PLQWTLGERQRTQEKYAEKMAAIGVIPGQRCGPPIPSRKPSIATAGDVRG
PGGG*
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mRNA from alignment at D-dudresnayi_contig10426:2607..3449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10426.463.1 ID=mRNA_D-dudresnayi_contig10426.463.1|Name=mRNA_D-dudresnayi_contig10426.463.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at D-dudresnayi_contig10426:2607..3449+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCATGTTCGGATGCGAGATATACTGGAGAAGAGGGCGAGTTTCGGCGGAG GGGGGTGGGGACGATGGCGTCGCAGGCCATGTCGAAACGTGGGAGTTTTC TGGACTCATGGGCGAGGATGACAGCGGTACCTGGGTCGCGTCGCAAAACG TCCATGGCCTGGATATTCTCATCAAAGACGATCTTCGGGTCTGGGCGGAC GGGCTGTGGGTGAATGACAGAGGGTTCGACCGAGAAGGGAATTTTGTCTA CGGCAATCAGCGGGGGGTGCCGTATAAGATGAGGAGGGTTGTCCCCGACG GACCTCTACAGTGGACACTAGGAGAAAGGCAGAGGACGCAAGAGAAATAC GCGGAAAAAATGGCCGCAATCGGAGTGATCCCTGGGCAGAGATGTGGGCC TCCCATCCCCTCAAGGAAACCCAGTATTGCTACAGCTGGTGACGTTCGCG GGCCCGGCGGTGGGTAGATTCCATACCCAGCCCCGTCTCTTAGAAACTAG CATATAGTTGTGCAATGTTATTGCGTTTTGCGACGCCTGGTAACGATTTA GGTAGAGCGATCTGCTTCAGAAGACAGTGGGGGTTCGTTCCGGGGACCTG TTCCTGAAGTAGCGGCGGAACGCGGCGTTGTTCGTGTGTGGCCTCATGCA AAGCGACGAGAAGAATTTGGAGCATCATCAAGTCCTGTAAATATTAAATA ATGCCAAGTACCGATAGCTGCTTCGCTGCTCGAGCAGATAATTCACTGCC GTGCGGTGTCGCGGGTTGGACAAGACGAGTCTGTTCATCGTCTCGCGCCC ACCAGACAAATTTGGACTTTGTTATATTTGGAGGCAGACTGGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10426:2607..3449+

>mRNA_D-dudresnayi_contig10426.463.1 ID=mRNA_D-dudresnayi_contig10426.463.1|Name=mRNA_D-dudresnayi_contig10426.463.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at D-dudresnayi_contig10426:2607..3449+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTCGGATGCGAGATATACTGGAGAAGAGGGCGAGTTTCGGCGGAGGG
GGGTGGGGACGATGGCGTCGCAGGCCATGTCGAAACGTGGGAGTTTTCTG
GACTCATGGGCGAGGATGACAGCGGTACCTGGGTCGCGTCGCAAAACGTC
CATGGCCTGGATATTCTCATCAAAGACGATCTTCGGGTCTGGGCGGACGG
GCTGTGGGTGAATGACAGAGGGTTCGACCGAGAAGGGAATTTTGTCTACG
GCAATCAGCGGGGGGTGCCGTATAAGATGAGGAGGGTTGTCCCCGACGGA
CCTCTACAGTGGACACTAGGAGAAAGGCAGAGGACGCAAGAGAAATACGC
GGAAAAAATGGCCGCAATCGGAGTGATCCCTGGGCAGAGATGTGGGCCTC
CCATCCCCTCAAGGAAACCCAGTATTGCTACAGCTGGTGACGTTCGCGGG
CCCGGCGGTGGGTAGATGTTCGGATGCGAGATATACTGGAGAAGAGGGCG
AGTTTCGGCGGAGGGGGGTGGGGACGATGGCGTCGCAGGCCATGTCGAAA
CGTGGGAGTTTTCTGGACTCATGGGCGAGGATGACAGCGGTACCTGGGTC
GCGTCGCAAAACGTCCATGGCCTGGATATTCTCATCAAAGACGATCTTCG
GGTCTGGGCGGACGGGCTGTGGGTGAATGACAGAGGGTTCGACCGAGAAG
GGAATTTTGTCTACGGCAATCAGCGGGGGGTGCCGTATAAGATGAGGAGG
GTTGTCCCCGACGGACCTCTACAGTGGACACTAGGAGAAAGGCAGAGGAC
GCAAGAGAAATACGCGGAAAAAATGGCCGCAATCGGAGTGATCCCTGGGC
AGAGATGTGGGCCTCCCATCCCCTCAAGGAAACCCAGTATTGCTACAGCT
GGTGACGTTCGCGGGCCCGGCGGTGGGTAG
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