prot_D-dudresnayi_contig9828.28638.1 (polypeptide) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-dudresnayi_contig9828.28638.1
Unique Nameprot_D-dudresnayi_contig9828.28638.1
Typepolypeptide
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Sequence length145
Homology
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 5.070e-83
Identity = 133/147 (90.48%), Postives = 140/147 (95.24%), Query Frame = 0
Query:    1 MGEDDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPGQENVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADTGGRAPEEG--MEAEEER 145
            + ++DELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIK+TPELQYMPGQ+ VRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEAD G R+ EEG  +EAEEER
Sbjct:   91 VDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEER 237          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.150e-79
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0
Query:    1 MGEDDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPGQENVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADTGGRAPE--EGMEAEEER 145
            M ++DELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIK+TPELQYMPGQ+ VRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEAD G R+ E  EG+EAEEER
Sbjct:   90 MDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEDGEGLEAEEER 236          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 189 bits (479), Expect = 8.550e-53
Identity = 87/124 (70.16%), Postives = 108/124 (87.10%), Query Frame = 0
Query:    6 ELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPGQENVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEAD 129
            ELDP EE+I+QEDAW VIS+YF+EKGLVRQQLDSFDEF+ +TM E+V+ +G+I++TPE QY+PG E  ++TFQI F QVYL+KP   EKDGS+T+MFPHEARLRNLTY++PLYCDI CK Y+AD
Sbjct:    8 ELDPHEEEITQEDAWQVISSYFAEKGLVRQQLDSFDEFINNTMQEIVTESGDIRVTPEPQYLPGMEVTKKTFQIKFNQVYLSKPIVIEKDGSVTNMFPHEARLRNLTYSAPLYCDIDCKIYDAD 131          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A3R7CZ86_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7CZ86_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.380e-45
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 0
Query:   14 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPGQENVRRT---FQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADTGGRAPEEGMEAEEE 144
            +SQEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM EL+  + +I++TPE QY PGQ++ R T   +QI FGQ+YL+K T  E DGS + MFPHEARLRNLTY++PLY D++C+ ++A   G  P E  E  EE
Sbjct:    9 VSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKSNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQA---GTVPIEEQEPYEE 139          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A6U1TGW8_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1TGW8_TRICV)

HSP 1 Score: 152 bits (384), Expect = 9.140e-44
Identity = 70/123 (56.91%), Postives = 96/123 (78.05%), Query Frame = 0
Query:   14 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPG----------QENVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTY 126
            ++QEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM ELV  +G+I+++PE+Q++ G          + + ++ F+I FGQVYL+KPT  EKDG++T++FPHEARLRNL Y++PLY D++   Y
Sbjct:    7 VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEMQHLVGYDEEGYEKSTESDAKKVFEIRFGQVYLSKPTTVEKDGTVTNIFPHEARLRNLVYSAPLYVDVTLNEY 129          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A8J2SZW4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZW4_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.690e-43
Identity = 75/112 (66.96%), Postives = 96/112 (85.71%), Query Frame = 0
Query:   13 DISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPGQENVRRT-FQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISC 123
            DI+QEDAW VISAYF+EKGLVRQQLDSFDEF+Q+TM ELV  +GE+ + PE QY+PGQ+++ R  F + F QVY++KPTA E+DG+ ++MFPHEARLRN+TY+SP+Y DISC
Sbjct:    2 DITQEDAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELHVEPEAQYLPGQKSLHRNKFTVVFNQVYVSKPTATERDGTTSNMFPHEARLRNMTYSSPIYVDISC 113          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A425D5T0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5T0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.000e-43
Identity = 77/120 (64.17%), Postives = 96/120 (80.00%), Query Frame = 0
Query:   14 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPGQENVRRT---FQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADT 130
            +SQEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM EL+  + +I++TPE QY PGQ+  R T   +QI FGQ+YL+K T  E DGS + MFPHEARLRNLTY++PLY D++C+ Y+A T
Sbjct:   17 VSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKTNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKYQAGT 136          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A418E4H4_9STRA (DNA-directed RNA polymerase subunit beta n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E4H4_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.260e-43
Identity = 77/120 (64.17%), Postives = 96/120 (80.00%), Query Frame = 0
Query:   14 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPGQENVRRT---FQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADT 130
            +SQEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM EL+  + +I++TPE QY PGQ+  R T   +QI FGQ+YL+K T  E DGS + MFPHEARLRNLTY++PLY D++C+ Y+A T
Sbjct:   17 VSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKTNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKYQAGT 136          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A024TRP0_9STRA (DNA-directed RNA polymerase subunit beta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRP0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 7.910e-43
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 0
Query:   14 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKLTPELQYMPGQENVRRT---FQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADTGGRAPEEGMEAEEE 144
            +SQEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM EL+  + +I++TPE QY PGQ++ R T   +QI FGQ+YL+K T  E DGS + MFPHEARLRNLTY++PLY D++C+ ++A   G  P E  E  EE
Sbjct:    9 VSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKSNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQA---GTVPIEEQEPYEE 139          
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Match: A0A7S1FRA3_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRA3_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.740e-42
Identity = 81/152 (53.29%), Postives = 115/152 (75.66%), Query Frame = 0
Query:    4 DDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVS-SAGEIKLTPELQYMPGQEN----------VRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADTGGRAPEEGMEAEEE 144
            D+ +D L+E ++QED+W VISAYF+EKGLVRQQLDSF+EF+Q+TM ELV  S+G++++TPE+Q++ G +           VRR F++ FGQVYL+KPT+ E DG++T+MFPHEARLRN+TY++PLY D++   Y  D    APE+  + E+E
Sbjct:   28 DEVVDDLDEIVTQEDSWAVISAYFAEKGLVRQQLDSFNEFIQNTMQELVDDSSGDVRVTPEVQHIVGYDEAEVEETEHSGVRRLFEVQFGQVYLSKPTSVEVDGTVTNMFPHEARLRNMTYSAPLYVDVTMNEYRQDANA-APEDLEQDEDE 178          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9828.28638.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ47_9PHAE5.070e-8390.48DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FHZ3_ECTSI1.150e-7991.16DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA8.550e-5370.16DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A3R7CZ86_9STRA1.380e-4560.45DNA-directed RNA polymerase n=1 Tax=Aphanomyces in... [more]
A0A6U1TGW8_TRICV9.140e-4456.91DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A8J2SZW4_9STRA1.690e-4366.96DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A425D5T0_9STRA4.000e-4364.17DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A418E4H4_9STRA4.260e-4364.17DNA-directed RNA polymerase subunit beta n=4 Tax=A... [more]
A0A024TRP0_9STRA7.910e-4360.45DNA-directed RNA polymerase subunit beta n=17 Tax=... [more]
A0A7S1FRA3_9STRA2.740e-4253.29DNA-directed RNA polymerase subunit beta n=2 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 31..134
e-value: 1.6E-24
score: 86.5
NoneNo IPR availableGENE3D3.90.1100.10coord: 24..144
e-value: 3.3E-6
score: 28.3
NoneNo IPR availablePANTHERPTHR20856:SF23coord: 6..124
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 12..130
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 6..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9828contigD-dudresnayi_contig9828:1739..4628 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9828.28638.1mRNA_D-dudresnayi_contig9828.28638.1Desmarestia dudresnayi DdudBR16 monoicousmRNAD-dudresnayi_contig9828 1739..4628 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-dudresnayi_contig9828.28638.1 ID=prot_D-dudresnayi_contig9828.28638.1|Name=mRNA_D-dudresnayi_contig9828.28638.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=145bp
MGEDDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHE
LVSSAGEIKLTPELQYMPGQENVRRTFQINFGQVYLAKPTAREKDGSLTS
MFPHEARLRNLTYNSPLYCDISCKTYEADTGGRAPEEGMEAEEER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2