mRNA_D-dudresnayi_contig9761.28557.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9761.28557.1
Unique NamemRNA_D-dudresnayi_contig9761.28557.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9761.28557.1 vs. uniprot
Match: D8LL59_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL59_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 4.680e-83
Identity = 133/251 (52.99%), Postives = 173/251 (68.92%), Query Frame = 1 
Query:    1 PLLRRAGVEGKDVEGRYTHITLCAYCCNPAVDDAAIGLCERCPRRFCIPCLRKDMERK----EPVTPDIH-ILDENVGDVFVKLCEWCVRGNDIDFPPPPADSAPMEHLLEQLLAHDLSRQFRAPVDIDEHPDYLESIGRESMMDLGRMLKKLRGRKYPRRRGPGQFVEDLARIWRNCRKFAGCDELGQPHYGTAVPGIVRCALILEAMATKYCTTHISEH-EGIDWPETAWDFYRKKTQRANEEARLRQL 735
            P+LR+     +  E R +H+  CA C +   +   IG CERCPR FC  CL + +  +    E +  D   +L+   GD+ +  C  C RG D +F PPP   APM+HLL +LL HDLS  FR PVDI +HPDY+ESIGR +MMDLG ML KL+G++YPRRRGPGQF EDL RIWRNCR+FAGCDELG+PHYG  VPGIVRCAL LEAM+ K+ ++++S++ E   W E+ WDF+R++ +R N EAR +QL
Sbjct:  318 PVLRQITEGREGAEDRSSHLMDCASCQHSLPEGDPIGRCERCPRSFCSQCLERGLVEQGVELEALGQDCRSLLNGKQGDISIARCPECFRGKDNEFAPPPPGGAPMDHLLSELLRHDLSLCFREPVDIVKHPDYVESIGRNAMMDLGTMLSKLQGKRYPRRRGPGQFQEDLNRIWRNCRRFAGCDELGRPHYGNTVPGIVRCALTLEAMSDKFISSYMSDNQETAAWQESTWDFHRQRQERENAEARRKQL 568
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BLAST of mRNA_D-dudresnayi_contig9761.28557.1 vs. uniprot
Match: A0A1E7EUT7_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUT7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.640e-6
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:  310 LLEQLLAHDLSRQFRAPVDIDEHPDYLESIGRESMMDLGRMLKKLRGRKYPRRRGPGQFVEDLARIWRNCRKF 528
            ++++L     +  F  PV++D+ PDY ESI  +  MDLG +  KL  +KY     P QF  D+ +IW NC+ +
Sbjct:    2 IVDRLAQDGFANIFLEPVNLDDFPDYEESI--DIPMDLGTVRTKLLSKKYQM---PEQFARDMRKIWNNCKIY 69
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9761.28557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL59_ECTSI4.680e-8352.99Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A1E7EUT7_9STRA7.640e-636.99Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9761contigD-dudresnayi_contig9761:671..1405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-25_000120.1
Hectar predicted targeting categoryother localisation
Exons1
Model size735
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.9359016-CDS-D-dudresnayi_contig9761:670..14051622930931.9359016-CDS-D-dudresnayi_contig9761:670..1405Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9761 671..1405 -
1690557970.068056-CDS-D-dudresnayi_contig9761:670..14051690557970.068056-CDS-D-dudresnayi_contig9761:670..1405Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9761 671..1405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9761.28557.1prot_D-dudresnayi_contig9761.28557.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9761 671..1405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9761.28557.1

>prot_D-dudresnayi_contig9761.28557.1 ID=prot_D-dudresnayi_contig9761.28557.1|Name=mRNA_D-dudresnayi_contig9761.28557.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=245bp
PLLRRAGVEGKDVEGRYTHITLCAYCCNPAVDDAAIGLCERCPRRFCIPC
LRKDMERKEPVTPDIHILDENVGDVFVKLCEWCVRGNDIDFPPPPADSAP
MEHLLEQLLAHDLSRQFRAPVDIDEHPDYLESIGRESMMDLGRMLKKLRG
RKYPRRRGPGQFVEDLARIWRNCRKFAGCDELGQPHYGTAVPGIVRCALI
LEAMATKYCTTHISEHEGIDWPETAWDFYRKKTQRANEEARLRQL
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mRNA from alignment at D-dudresnayi_contig9761:671..1405-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9761.28557.1 ID=mRNA_D-dudresnayi_contig9761.28557.1|Name=mRNA_D-dudresnayi_contig9761.28557.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at D-dudresnayi_contig9761:671..1405- (Desmarestia dudresnayi DdudBR16 monoicous)
CCTTTGCTCCGACGTGCAGGTGTTGAAGGCAAGGATGTGGAGGGTAGATA
CACGCACATAACCCTGTGCGCGTATTGTTGCAACCCTGCGGTTGACGATG
CCGCAATCGGGCTCTGTGAGAGATGCCCGCGAAGGTTCTGCATTCCGTGC
CTACGCAAAGACATGGAGAGGAAAGAACCTGTAACGCCTGATATTCACAT
CTTGGATGAAAACGTGGGCGATGTATTCGTCAAGCTATGCGAATGGTGTG
TGCGCGGTAATGACATCGACTTCCCACCGCCACCCGCAGACTCGGCGCCA
ATGGAGCATCTCCTAGAGCAGCTTCTGGCGCACGATTTATCGCGCCAATT
CCGGGCTCCTGTAGATATCGACGAGCACCCCGACTACCTAGAGTCGATTG
GACGGGAGTCTATGATGGACCTGGGCAGAATGCTGAAGAAGCTCCGAGGA
CGAAAGTACCCCCGGCGGCGAGGACCTGGCCAATTTGTCGAAGACCTTGC
GCGGATTTGGCGCAATTGCCGGAAGTTTGCCGGGTGTGACGAGCTTGGAC
AGCCTCATTACGGGACTGCCGTGCCAGGCATTGTTCGGTGCGCTCTCATC
CTTGAAGCAATGGCCACGAAATATTGCACCACACACATTTCCGAGCACGA
AGGCATCGATTGGCCTGAAACTGCCTGGGATTTCTACCGCAAGAAAACTC
AACGGGCAAACGAGGAAGCGAGACTCCGGCAGTTA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9761:671..1405-

>mRNA_D-dudresnayi_contig9761.28557.1 ID=mRNA_D-dudresnayi_contig9761.28557.1|Name=mRNA_D-dudresnayi_contig9761.28557.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at D-dudresnayi_contig9761:671..1405- (Desmarestia dudresnayi DdudBR16 monoicous)
CCTTTGCTCCGACGTGCAGGTGTTGAAGGCAAGGATGTGGAGGGTAGATA
CACGCACATAACCCTGTGCGCGTATTGTTGCAACCCTGCGGTTGACGATG
CCGCAATCGGGCTCTGTGAGAGATGCCCGCGAAGGTTCTGCATTCCGTGC
CTACGCAAAGACATGGAGAGGAAAGAACCTGTAACGCCTGATATTCACAT
CTTGGATGAAAACGTGGGCGATGTATTCGTCAAGCTATGCGAATGGTGTG
TGCGCGGTAATGACATCGACTTCCCACCGCCACCCGCAGACTCGGCGCCA
ATGGAGCATCTCCTAGAGCAGCTTCTGGCGCACGATTTATCGCGCCAATT
CCGGGCTCCTGTAGATATCGACGAGCACCCCGACTACCTAGAGTCGATTG
GACGGGAGTCTATGATGGACCTGGGCAGAATGCTGAAGAAGCTCCGAGGA
CGAAAGTACCCCCGGCGGCGAGGACCTGGCCAATTTGTCGAAGACCTTGC
GCGGATTTGGCGCAATTGCCGGAAGTTTGCCGGGTGTGACGAGCTTGGAC
AGCCTCATTACGGGACTGCCGTGCCAGGCATTGTTCGGTGCGCTCTCATC
CTTGAAGCAATGGCCACGAAATATTGCACCACACACATTTCCGAGCACGA
AGGCATCGATTGGCCTGAAACTGCCTGGGATTTCTACCGCAAGAAAACTC
AACGGGCAAACGAGGAAGCGAGACTCCGGCAGTTACCTTTGCTCCGACGT
GCAGGTGTTGAAGGCAAGGATGTGGAGGGTAGATACACGCACATAACCCT
GTGCGCGTATTGTTGCAACCCTGCGGTTGACGATGCCGCAATCGGGCTCT
GTGAGAGATGCCCGCGAAGGTTCTGCATTCCGTGCCTACGCAAAGACATG
GAGAGGAAAGAACCTGTAACGCCTGATATTCACATCTTGGATGAAAACGT
GGGCGATGTATTCGTCAAGCTATGCGAATGGTGTGTGCGCGGTAATGACA
TCGACTTCCCACCGCCACCCGCAGACTCGGCGCCAATGGAGCATCTCCTA
GAGCAGCTTCTGGCGCACGATTTATCGCGCCAATTCCGGGCTCCTGTAGA
TATCGACGAGCACCCCGACTACCTAGAGTCGATTGGACGGGAGTCTATGA
TGGACCTGGGCAGAATGCTGAAGAAGCTCCGAGGACGAAAGTACCCCCGG
CGGCGAGGACCTGGCCAATTTGTCGAAGACCTTGCGCGGATTTGGCGCAA
TTGCCGGAAGTTTGCCGGGTGTGACGAGCTTGGACAGCCTCATTACGGGA
CTGCCGTGCCAGGCATTGTTCGGTGCGCTCTCATCCTTGAAGCAATGGCC
ACGAAATATTGCACCACACACATTTCCGAGCACGAAGGCATCGATTGGCC
TGAAACTGCCTGGGATTTCTACCGCAAGAAAACTCAACGGGCAAACGAGG
AAGCGAGACTCCGGCAGTTA
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