mRNA_D-dudresnayi_contig9665.28450.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9665.28450.1
Unique NamemRNA_D-dudresnayi_contig9665.28450.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A7S3M0W9_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0W9_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.980e-48
Identity = 76/81 (93.83%), Postives = 80/81 (98.77%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEGYVRGELHAAYIVAPPK 243
            SMRIVE+IDNFTDVIHLKLEPMFLYP+WTAPRDFCLIRYWRDNFDGSYVICLDST HPECPL+EGYVRGELHAAYIVAPP+
Sbjct:  318 SMRIVENIDNFTDVIHLKLEPMFLYPSWTAPRDFCLIRYWRDNFDGSYVICLDSTLHPECPLVEGYVRGELHAAYIVAPPR 398          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A7S1ZBM6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBM6_TRICV)

HSP 1 Score: 114 bits (285), Expect = 1.640e-30
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEGYVRGELHAAYIVAP 237
            S R++E++D+  D+IHL   PM+L+P+WTAPRD+ L+RYWR + DG+Y+ICLDS  HP CP +  YVRGELH  Y +AP
Sbjct:   88 SFRVLETLDDHMDIIHLFFRPMYLFPSWTAPRDYVLVRYWRFDPDGTYMICLDSVQHPSCPPLPDYVRGELHGVYTIAP 166          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: W7TJE2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJE2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.640e-28
Identity = 47/80 (58.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    4 MRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEGYVRGELHAAYIVAPPK 243
            +R VE +D+ TDVIHL L+P F +PTWTAPRDFCL+R WR + DG+YVIC DST HP CP ++G+VRG +H+ Y ++P +
Sbjct:  503 VRNVEHLDDQTDVIHLSLKPFFFWPTWTAPRDFCLLRSWRYDEDGTYVICYDSTIHPGCPPVDGFVRGSMHSVYTISPKR 582          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A1Z5J8W9_FISSO (START domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8W9_FISSO)

HSP 1 Score: 113 bits (282), Expect = 2.370e-27
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEGYVRGELHAAYIVAPPK 243
            + RIVE++D+ TD+IH+ L P+FL+P+WTAPRDFCL RYWR   DGSYVIC +S  H +CPL + +VR E+H  + +AP K
Sbjct: 1633 TFRIVEAVDDNTDIIHMVLSPLFLFPSWTAPRDFCLYRYWRLEEDGSYVICYESVEHSDCPLEDFFVRAEMHKVFTIAPHK 1713          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A7S2NZD6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZD6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.210e-27
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEGYVRGELHAAYIVAPPK 243
            + R+++ +D   DVIHL   P++L+P+WTAPRDFCL RYWR   DGSY++C DS  H ECP ++ YVRGELH  Y+++P K
Sbjct:  824 AFRVIDKMDEHMDVIHLIFRPLYLFPSWTAPRDFCLQRYWRYEDDGSYIVCYDSVKHRECPPMKDYVRGELHGVYMISPRK 904          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A7R9YW75_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YW75_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.250e-26
Identity = 43/81 (53.09%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEGYVRGELHAAYIVAPPK 243
            S RI+E+ID+  D+IHL   P++L+P+WTAPRD+ L RYWR + DGSY+IC++S  H +CP ++G+VRG++H  Y +AP K
Sbjct:   78 SFRIIETIDDHMDIIHLFFRPVYLFPSWTAPRDYVLFRYWRYDPDGSYMICVESVKHQDCPPVDGFVRGKMHGVYTIAPLK 158          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A1Z5K383_FISSO (START domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K383_FISSO)

HSP 1 Score: 110 bits (274), Expect = 2.800e-26
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEGYVRGELHAAYIVAPPK 243
            + RIVE++D+ TD+IH+ L P+FL+P+WTAPRDFCL RYWR   DGSYV+C +S  H +CP  + +VR E+H  + +AP K
Sbjct:  396 TFRIVEAVDDNTDIIHMVLSPLFLFPSWTAPRDFCLYRYWRLEEDGSYVVCYESVEHSDCPPEDFFVRAEMHKVFTIAPHK 476          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A7S1V6X1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6X1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.620e-25
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECP-LIEGYVRGELHAAYIVAPPK 243
            S R++  ID+  D+IHL   P++L+P+WT PRDF L RYWR   DG+YVIC +S +H ECP L+  YVRGE+HA Y +AP K
Sbjct:  535 SFRVLRKIDDNMDIIHLVYRPLYLFPSWTTPRDFVLFRYWRFEPDGTYVICYESVNHEECPPLVNKYVRGEMHAVYTIAPQK 616          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A7S2ESX4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ESX4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.650e-25
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEGYVRGELHAAYIVAPPK 243
            S RIV+++D+  D+I L + P++L+P+WTAPRDF L+RYWR   DG+Y +C DS  H +CP   GYVRG+LH+ + +AP K
Sbjct:  762 SFRIVKTLDDHMDIIQLVMRPLYLFPSWTAPRDFVLVRYWRLEADGTYFVCYDSIEHRDCPPTPGYVRGDLHSVFTIAPRK 842          
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Match: A0A7R9U5I6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5I6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.280e-25
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 SMRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVICLDSTSHPECPLIEG--YVRGELHAAYIVAP 237
            S+RIVE+ID+  DVIH+KL P+ L PTWT  RDFCL+RYWR + DG Y+I  DS  H ECP  E   YVRGELHA Y +AP
Sbjct:  380 SVRIVETIDDHADVIHMKLRPIDLGPTWTTARDFCLMRYWRLDDDGYYIIVFDSMEHRECPQSEDDDYVRGELHALYTIAP 460          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9665.28450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M0W9_9STRA1.980e-4893.83Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S1ZBM6_TRICV1.640e-3056.96Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
W7TJE2_9STRA2.640e-2858.75Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1Z5J8W9_FISSO2.370e-2756.79START domain-containing protein n=1 Tax=Fistulifer... [more]
A0A7S2NZD6_9STRA3.210e-2754.32Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9YW75_9STRA1.250e-2653.09Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5K383_FISSO2.800e-2654.32START domain-containing protein n=1 Tax=Fistulifer... [more]
A0A7S1V6X1_9STRA4.620e-2554.88Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2ESX4_9STRA4.650e-2551.85Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9U5I6_9STRA6.280e-2561.73Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9665contigD-dudresnayi_contig9665:10912..11272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog164328.Phyra80680
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs2CMSQ@1,2QRRZ@2759,3Q8QR@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9665.28450.1prot_D-dudresnayi_contig9665.28450.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9665 10912..11269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.9811656-CDS-D-dudresnayi_contig9665:10911..110661622930917.9811656-CDS-D-dudresnayi_contig9665:10911..11066Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9665 10912..11066 -
1690557964.915159-CDS-D-dudresnayi_contig9665:10911..110661690557964.915159-CDS-D-dudresnayi_contig9665:10911..11066Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9665 10912..11066 -
1622930917.9970903-CDS-D-dudresnayi_contig9665:11184..112691622930917.9970903-CDS-D-dudresnayi_contig9665:11184..11269Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9665 11185..11269 -
1690557964.9272785-CDS-D-dudresnayi_contig9665:11184..112691690557964.9272785-CDS-D-dudresnayi_contig9665:11184..11269Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9665 11185..11269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.0121949-UTR-D-dudresnayi_contig9665:11269..112721622930918.0121949-UTR-D-dudresnayi_contig9665:11269..11272Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9665 11270..11272 -
1690557964.936879-UTR-D-dudresnayi_contig9665:11269..112721690557964.936879-UTR-D-dudresnayi_contig9665:11269..11272Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9665 11270..11272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9665.28450.1

>prot_D-dudresnayi_contig9665.28450.1 ID=prot_D-dudresnayi_contig9665.28450.1|Name=mRNA_D-dudresnayi_contig9665.28450.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=80bp
MRIVESIDNFTDVIHLKLEPMFLYPTWTAPRDFCLIRYWRDNFDGSYVIC
LDSTSHPECPLIEGYVRGELHAAYIVAPPK
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mRNA from alignment at D-dudresnayi_contig9665:10912..11272-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9665.28450.1 ID=mRNA_D-dudresnayi_contig9665.28450.1|Name=mRNA_D-dudresnayi_contig9665.28450.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=361bp|location=Sequence derived from alignment at D-dudresnayi_contig9665:10912..11272- (Desmarestia dudresnayi DdudBR16 monoicous)
TCTATGAGAATAGTCGAAAGTATCGATAACTTCACTGATGTCATCCATCT GAAACTAGAGCCGATGTTTTTATATCCTACTTGGACTGGTAAGGAAATTT ACTATTCTTTCTTTAATTTTTATATTTATAATGTATTATATACATATGTT TTTAAAATTTATTTATTATTATTACTAATACTAAAAACACCATTTAATAC CACTAGCGCCTCGCGACTTCTGTCTGATCCGATACTGGAGGGACAACTTC GACGGCAGCTACGTGATCTGCCTGGACTCCACCTCCCACCCAGAGTGTCC CCTGATCGAAGGATATGTGCGCGGGGAGCTGCATGCAGCGTATATCGTCG CCCCACCTAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9665:10912..11272-

>mRNA_D-dudresnayi_contig9665.28450.1 ID=mRNA_D-dudresnayi_contig9665.28450.1|Name=mRNA_D-dudresnayi_contig9665.28450.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at D-dudresnayi_contig9665:10912..11272- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGAATAGTCGAAAGTATCGATAACTTCACTGATGTCATCCATCTGAA
ACTAGAGCCGATGTTTTTATATCCTACTTGGACTGATGAGAATAGTCGAA
AGTATCGATAACTTCACTGATGTCATCCATCTGAAACTAGAGCCGATGTT
TTTATATCCTACTTGGACTGCGCCTCGCGACTTCTGTCTGATCCGATACT
GGAGGGACAACTTCGACGGCAGCTACGTGATCTGCCTGGACTCCACCTCC
CACCCAGAGTGTCCCCTGATCGAAGGATATGTGCGCGGGGAGCTGCATGC
AGCGTATATCGTCGCCCCACCTAAGCGCCTCGCGACTTCTGTCTGATCCG
ATACTGGAGGGACAACTTCGACGGCAGCTACGTGATCTGCCTGGACTCCA
CCTCCCACCCAGAGTGTCCCCTGATCGAAGGATATGTGCGCGGGGAGCTG
CATGCAGCGTATATCGTCGCCCCACCTAAG
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