mRNA_D-dudresnayi_contig9413.28217.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9413.28217.1
Unique NamemRNA_D-dudresnayi_contig9413.28217.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9413.28217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9413contigD-dudresnayi_contig9413:3473..3929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size457
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.9173694-UTR-D-dudresnayi_contig9413:3472..35571622930884.9173694-UTR-D-dudresnayi_contig9413:3472..3557Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9413 3473..3557 +
1690557952.4345942-UTR-D-dudresnayi_contig9413:3472..35571690557952.4345942-UTR-D-dudresnayi_contig9413:3472..3557Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9413 3473..3557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.966177-CDS-D-dudresnayi_contig9413:3557..39291622930884.966177-CDS-D-dudresnayi_contig9413:3557..3929Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9413 3558..3929 +
1690557952.4453595-CDS-D-dudresnayi_contig9413:3557..39291690557952.4453595-CDS-D-dudresnayi_contig9413:3557..3929Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9413 3558..3929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9413.28217.1prot_D-dudresnayi_contig9413.28217.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9413 3558..3929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9413.28217.1

>prot_D-dudresnayi_contig9413.28217.1 ID=prot_D-dudresnayi_contig9413.28217.1|Name=mRNA_D-dudresnayi_contig9413.28217.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=124bp
MARGVSGFSTSTSSSSSSSGRSWTEQTWFIVRWSFMATIIAGRGDRLGFF
WVVFVGKMSTWYCIQLSFSCVWFCWLVFVGKMSTVLLLCFVLRLFLFFSL
VFVGKMSTAVLCFSCVWFFLFSG*
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mRNA from alignment at D-dudresnayi_contig9413:3473..3929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9413.28217.1 ID=mRNA_D-dudresnayi_contig9413.28217.1|Name=mRNA_D-dudresnayi_contig9413.28217.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=457bp|location=Sequence derived from alignment at D-dudresnayi_contig9413:3473..3929+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCCCGCACTTCAAGCCGGACGCACTACGTCCCCATCGCGGAGCTACCCCA
AGGGAGTAGGATAATCGTGAGCTGTCTACAGCAGTATGGCGAGGGGGGTG
TCAGGCTTTTCAACTTCGACTAGCAGCAGCAGTAGCAGCAGTGGGAGGTC
TTGGACGGAGCAAACGTGGTTTATCGTCAGGTGGAGCTTCATGGCAACTA
TAATCGCGGGACGAGGCGATCGTCTGGGTTTTTTCTGGGTGGTGTTCGTA
GGGAAAATGAGCACCTGGTACTGTATACAGTTGTCTTTTTCTTGCGTCTG
GTTTTGTTGGTTGGTGTTCGTGGGGAAAATGAGTACTGTACTACTACTGT
GTTTTGTCTTGCGTCTGTTTTTGTTTTTTAGCCTGGTGTTCGTAGGGAAA
ATGAGTACTGCTGTATTGTGTTTTTCTTGCGTCTGGTTTTTTCTTTTTTC
TGGTTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9413:3473..3929+

>mRNA_D-dudresnayi_contig9413.28217.1 ID=mRNA_D-dudresnayi_contig9413.28217.1|Name=mRNA_D-dudresnayi_contig9413.28217.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at D-dudresnayi_contig9413:3473..3929+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGAGGGGGGTGTCAGGCTTTTCAACTTCGACTAGCAGCAGCAGTAG
CAGCAGTGGGAGGTCTTGGACGGAGCAAACGTGGTTTATCGTCAGGTGGA
GCTTCATGGCAACTATAATCGCGGGACGAGGCGATCGTCTGGGTTTTTTC
TGGGTGGTGTTCGTAGGGAAAATGAGCACCTGGTACTGTATACAGTTGTC
TTTTTCTTGCGTCTGGTTTTGTTGGTTGGTGTTCGTGGGGAAAATGAGTA
CTGTACTACTACTGTGTTTTGTCTTGCGTCTGTTTTTGTTTTTTAGCCTG
GTGTTCGTAGGGAAAATGAGTACTGCTGTATTGTGTTTTTCTTGCGTCTG
GTTTTTTCTTTTTTCTGGTTGAATGGCGAGGGGGGTGTCAGGCTTTTCAA
CTTCGACTAGCAGCAGCAGTAGCAGCAGTGGGAGGTCTTGGACGGAGCAA
ACGTGGTTTATCGTCAGGTGGAGCTTCATGGCAACTATAATCGCGGGACG
AGGCGATCGTCTGGGTTTTTTCTGGGTGGTGTTCGTAGGGAAAATGAGCA
CCTGGTACTGTATACAGTTGTCTTTTTCTTGCGTCTGGTTTTGTTGGTTG
GTGTTCGTGGGGAAAATGAGTACTGTACTACTACTGTGTTTTGTCTTGCG
TCTGTTTTTGTTTTTTAGCCTGGTGTTCGTAGGGAAAATGAGTACTGCTG
TATTGTGTTTTTCTTGCGTCTGGTTTTTTCTTTTTTCTGGTTGA
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