mRNA_D-dudresnayi_contig940.28201.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig940.28201.1
Unique NamemRNA_D-dudresnayi_contig940.28201.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig940.28201.1 vs. uniprot
Match: A0A6H5JCN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-16
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 2 
Query:   95 LEETALSFTGVIALGTCLCCTTMSCVALCIKLVTWIFGQR--RPRRILIGHTHQ-DHDNRVPAYNPLDHHXXXXXXXXPNSNCAEQRIG-SIHISDIEMRQVPFRNIVEPLE--NNGGGRPSNRFATAADID 472
            L ETALSFTG+I++ T  CC+TMSCVALCIKL +W+FG R  R R  L+ H  Q D +     Y+P  HH         ++N AE+R G ++H S+IE+RQVPF N+    E  N+  G     F T A  D
Sbjct:   13 LRETALSFTGIISIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYSP--HHQPVIIL---DTNSAEKRSGYTLHASEIELRQVPFGNLEAQRETKNSDDGDDDVVFLTGAQAD 139
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BLAST of mRNA_D-dudresnayi_contig940.28201.1 vs. uniprot
Match: D7FQF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 8.750e-14
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 2 
Query:   95 LEETALSFTGVIALGTCLCCTTMSCVALCIKLVTWIFGQR--RPRRILIGHTHQ-DHDNRVPAYNPLDHHXXXXXXXXPNSNCAEQRIG-SIHISDIEMRQVPFRNI 403
            L ETALSFTG++++ T  CC+TMSCVALCIKL +W+FG R  R R  L+ H  Q D +     Y P             ++N AEQR G ++  S+IE+RQVPF N+
Sbjct:   13 LRETALSFTGIVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYYPHQQPVIIL-----DTNPAEQRSGCTLRASEIELRQVPFGNL 114
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig940.28201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCN9_9PHAE1.020e-1645.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQF6_ECTSI8.750e-1446.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig940contigD-dudresnayi_contig940:6726..8849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006310.1
Exons2
Model size1461
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig940.28201.1prot_D-dudresnayi_contig940.28201.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig940 7538..8779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.2888107-UTR-D-dudresnayi_contig940:6725..75371622930882.2888107-UTR-D-dudresnayi_contig940:6725..7537Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig940 6726..7537 -
1690557951.308282-UTR-D-dudresnayi_contig940:6725..75371690557951.308282-UTR-D-dudresnayi_contig940:6725..7537Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig940 6726..7537 -
1622930882.3465252-UTR-D-dudresnayi_contig940:8779..88491622930882.3465252-UTR-D-dudresnayi_contig940:8779..8849Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig940 8780..8849 -
1690557951.3463032-UTR-D-dudresnayi_contig940:8779..88491690557951.3463032-UTR-D-dudresnayi_contig940:8779..8849Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig940 8780..8849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.3116682-CDS-D-dudresnayi_contig940:7537..81071622930882.3116682-CDS-D-dudresnayi_contig940:7537..8107Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig940 7538..8107 -
1690557951.3192394-CDS-D-dudresnayi_contig940:7537..81071690557951.3192394-CDS-D-dudresnayi_contig940:7537..8107Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig940 7538..8107 -
1622930882.3310926-CDS-D-dudresnayi_contig940:8770..87791622930882.3310926-CDS-D-dudresnayi_contig940:8770..8779Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig940 8771..8779 -
1690557951.3305857-CDS-D-dudresnayi_contig940:8770..87791690557951.3305857-CDS-D-dudresnayi_contig940:8770..8779Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig940 8771..8779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig940.28201.1

>prot_D-dudresnayi_contig940.28201.1 ID=prot_D-dudresnayi_contig940.28201.1|Name=mRNA_D-dudresnayi_contig940.28201.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=193bp
MDQRQAAALEETALSFTGVIALGTCLCCTTMSCVALCIKLVTWIFGQRRP
RRILIGHTHQDHDNRVPAYNPLDHHHHHHQHHHPNSNCAEQRIGSIHISD
IEMRQVPFRNIVEPLENNGGGRPSNRFATAADIDSTGSPNSANENGRKPT
VNGPTSDPRLKELEDDERFSTHEDGDDDGGEEQDSGHGRLGG*
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mRNA from alignment at D-dudresnayi_contig940:6726..8849-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig940.28201.1 ID=mRNA_D-dudresnayi_contig940.28201.1|Name=mRNA_D-dudresnayi_contig940.28201.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2124bp|location=Sequence derived from alignment at D-dudresnayi_contig940:6726..8849- (Desmarestia dudresnayi DdudBR16 monoicous)
GCTCTCGGTACAAACGTGGGCAGTTGCACTTCTCATCCAATGCGAAGCAC
ATGCGTTGTGAATATTTGCAATGGACCAGGTGAGCGAGGCTGGTATGGTG
ATTTGTTTGTTAGATGCGTAAGATTGGAACGTGCTGCTGGTGACGGTACC
GCAGAGGATGGATGATATTAAATAGTAAATTGAGTGTACGCGAAGTCGCT
GTTCTACAGCAGCAGTTCGTTTGTAGTCAGTGTCAAGTACATCAGCTATG
GCAGCTAACAAGAAGTGAGTATAATACGAGCAGAGACCGAAGAGGTTCTC
CTTGCTGGTAAGTTGCGCACGTTGGTTTTCTCTTCGATTGTTGTGCCTTT
CCTGACCTGTGTATTCGTCGGCGTCCTCGCAAAATATGGTCTGACTGGTC
GTCGGCAGACAGAATGCGATGCTACGTACACTATTTTACCGTACCAGGTA
GAATAACTTACCTGAGGACCGATAGAATCCGCGCGACCGATATATCGCAC
AGTGAGGTTGACGATTATCTCCTGGCCCCCGAACCAGTTTGGAACGTCAT
GGGTGATGTATTTGTAAGTTAAAATAGTTTACGCTCGTATAATTTATGTT
TGTCAAATGCTATCCATATCTGAGCCAATATATCTTGCTCTGTACGAGTA
CGACGTACGCCGAATAATTTGTTTGTTGAGGTTCATGCTCATCAGGAACG
TTTTTGGCTTGCTACCCTTCCTTCGTTCGATACGCGCAGCAGCGTCAAGC
TGCCGCACTCGAGGAAACAGCGCTATCTTTCACGGGCGTCATAGCCCTTG
GTACCTGCTTGTGCTGCACGACAATGTCGTGTGTCGCGCTGTGCATCAAG
CTGGTTACCTGGATATTCGGCCAGCGTCGCCCACGAAGAATATTGATTGG
CCACACACATCAAGACCACGACAACCGCGTTCCGGCGTACAACCCCCTAG
ACCACCACCATCACCACCACCAACATCACCACCCGAATAGCAACTGCGCG
GAGCAGCGCATCGGTTCCATCCATATTTCGGACATCGAGATGCGCCAAGT
TCCGTTCCGAAACATAGTGGAACCACTGGAGAACAACGGAGGAGGTCGTC
CAAGCAACCGTTTCGCTACGGCAGCAGATATTGATAGCACAGGTAGCCCT
AATAGTGCGAATGAAAATGGCAGGAAGCCAACGGTCAACGGACCAACGAG
TGATCCGCGTTTGAAAGAATTGGAGGACGACGAACGGTTCTCGACGCATG
AAGATGGTGATGATGATGGTGGTGAGGAACAGGACTCGGGCCACGGTAGG
CTCGGAGGATAGCCATACGTCATAGGCGGAGGATAGCCGTATGTGATAGA
TAGACGCCCCCCCCCCCCCGGGGAGTCTGGCGTTCTGCCACCTGCATCGT
GCGTTCTTGCTTATTGGACTTACAAGAGTATAGTGCAGGGGTGCTTCTGG
AGTGAAGAAAGCACTGTACGGTGCTACTCGTAGCAAACAAATGAAGGGGG
CATACCGGCTGGGGGACAGTAAGAGCGTTTTTGCCCTCTTAGGGATTGTT
GACGTATACGAGAGTAATAGTTGACGTTGGTGGGTTTTTTGGTGTTACTG
TGAAGCTTTACTACTACTGGTGTAGCCATCACATTCAAGTCGTCGCCTGT
ATTCCTTGTGCGCAGCCTCAAAGAAAGTGCTGCACGTAGGAAGTGAAGTA
GTAATAGGTCGTACTTGACTTCTTCGGAGAATACGAGGCTGGCTAGGATA
CGAGTACCTATGCTTTTTTATTATTTCTTACATACTGTACGTCAGCCGCG
TTGTAAATGTGTGTGTGTGGTTGGCAGTGGTTGGTGTCGGGAGTTCGTAG
TTCCTGGTGGTGGTACTCGTACAAGAAGGTTTCATGTATGATACAAGGTC
TGGAATACGTGGTTGAGGGTTCGAGCGCCTGCTTTGGTGCTATCCTTGTT
GTCGTCGTCGGCGCGTTTTCGAAGCCTCGTTTTTTCTGTTCATGCATGCG
CACTCGACGGAGGAATTATGTTTCCTGTCCGCCCGGTGAAAAGTGAAAAC
ATAAAGCGTGCTGACTGGGGGTTCCGTTTCAATGCTATAACTCTAGTCTT
TATCGTTATGATGATAGATACGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig940:6726..8849-

>mRNA_D-dudresnayi_contig940.28201.1 ID=mRNA_D-dudresnayi_contig940.28201.1|Name=mRNA_D-dudresnayi_contig940.28201.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at D-dudresnayi_contig940:6726..8849- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGACCAGATGGACCAGCGTCAAGCTGCCGCACTCGAGGAAACAGCGCT
ATCTTTCACGGGCGTCATAGCCCTTGGTACCTGCTTGTGCTGCACGACAA
TGTCGTGTGTCGCGCTGTGCATCAAGCTGGTTACCTGGATATTCGGCCAG
CGTCGCCCACGAAGAATATTGATTGGCCACACACATCAAGACCACGACAA
CCGCGTTCCGGCGTACAACCCCCTAGACCACCACCATCACCACCACCAAC
ATCACCACCCGAATAGCAACTGCGCGGAGCAGCGCATCGGTTCCATCCAT
ATTTCGGACATCGAGATGCGCCAAGTTCCGTTCCGAAACATAGTGGAACC
ACTGGAGAACAACGGAGGAGGTCGTCCAAGCAACCGTTTCGCTACGGCAG
CAGATATTGATAGCACAGGTAGCCCTAATAGTGCGAATGAAAATGGCAGG
AAGCCAACGGTCAACGGACCAACGAGTGATCCGCGTTTGAAAGAATTGGA
GGACGACGAACGGTTCTCGACGCATGAAGATGGTGATGATGATGGTGGTG
AGGAACAGGACTCGGGCCACGGTAGGCTCGGAGGATAGCGTCAAGCTGCC
GCACTCGAGGAAACAGCGCTATCTTTCACGGGCGTCATAGCCCTTGGTAC
CTGCTTGTGCTGCACGACAATGTCGTGTGTCGCGCTGTGCATCAAGCTGG
TTACCTGGATATTCGGCCAGCGTCGCCCACGAAGAATATTGATTGGCCAC
ACACATCAAGACCACGACAACCGCGTTCCGGCGTACAACCCCCTAGACCA
CCACCATCACCACCACCAACATCACCACCCGAATAGCAACTGCGCGGAGC
AGCGCATCGGTTCCATCCATATTTCGGACATCGAGATGCGCCAAGTTCCG
TTCCGAAACATAGTGGAACCACTGGAGAACAACGGAGGAGGTCGTCCAAG
CAACCGTTTCGCTACGGCAGCAGATATTGATAGCACAGGTAGCCCTAATA
GTGCGAATGAAAATGGCAGGAAGCCAACGGTCAACGGACCAACGAGTGAT
CCGCGTTTGAAAGAATTGGAGGACGACGAACGGTTCTCGACGCATGAAGA
TGGTGATGATGATGGTGGTGAGGAACAGGACTCGGGCCACGGTAGGCTCG
GAGGATAG
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