mRNA_D-dudresnayi_contig9339.28134.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9339.28134.1
Unique NamemRNA_D-dudresnayi_contig9339.28134.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9339.28134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9339contigD-dudresnayi_contig9339:959..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.542988-UTR-D-dudresnayi_contig9339:958..9601622930873.542988-UTR-D-dudresnayi_contig9339:958..960Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9339 959..960 +
1690557948.1513007-UTR-D-dudresnayi_contig9339:958..9601690557948.1513007-UTR-D-dudresnayi_contig9339:958..960Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9339 959..960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.5598614-CDS-D-dudresnayi_contig9339:960..13411622930873.5598614-CDS-D-dudresnayi_contig9339:960..1341Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9339 961..1341 +
1690557948.1595025-CDS-D-dudresnayi_contig9339:960..13411690557948.1595025-CDS-D-dudresnayi_contig9339:960..1341Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9339 961..1341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9339.28134.1prot_D-dudresnayi_contig9339.28134.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9339 961..1341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9339.28134.1

>prot_D-dudresnayi_contig9339.28134.1 ID=prot_D-dudresnayi_contig9339.28134.1|Name=mRNA_D-dudresnayi_contig9339.28134.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=127bp
MATGAGGGGGEGLQPAARQEHQSSPSQTSASEGGGPALAAVNENGRPTAA
AATAGLASDDARDHSAGTPSNDLENSAAASSAVVANGSAASAGEGGHPVE
KTTRGSRAKSARGKARGRGGRGSRGGK
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mRNA from alignment at D-dudresnayi_contig9339:959..1341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9339.28134.1 ID=mRNA_D-dudresnayi_contig9339.28134.1|Name=mRNA_D-dudresnayi_contig9339.28134.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=383bp|location=Sequence derived from alignment at D-dudresnayi_contig9339:959..1341+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAATGGCAACCGGCGCTGGTGGAGGCGGGGGGGAAGGTCTACAGCCTGCG
GCGCGGCAAGAACACCAGTCTTCTCCGTCACAAACGTCCGCGTCGGAAGG
AGGAGGGCCAGCTCTTGCTGCGGTGAACGAGAACGGAAGACCAACAGCAG
CAGCAGCAACGGCAGGACTCGCCTCCGACGATGCCCGTGATCATTCCGCA
GGAACGCCTTCGAATGACTTGGAAAACTCTGCTGCTGCTTCTTCTGCCGT
CGTTGCCAACGGTAGTGCGGCTAGCGCTGGTGAAGGCGGCCATCCCGTCG
AGAAAACAACAAGAGGAAGCCGCGCGAAAAGTGCTAGAGGCAAAGCGCGC
GGGCGAGGAGGAAGGGGAAGCCGCGGTGGCAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9339:959..1341+

>mRNA_D-dudresnayi_contig9339.28134.1 ID=mRNA_D-dudresnayi_contig9339.28134.1|Name=mRNA_D-dudresnayi_contig9339.28134.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at D-dudresnayi_contig9339:959..1341+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCAACCGGCGCTGGTGGAGGCGGGGGGGAAGGTCTACAGCCTGCGGC
GCGGCAAGAACACCAGTCTTCTCCGTCACAAACGTCCGCGTCGGAAGGAG
GAGGGCCAGCTCTTGCTGCGGTGAACGAGAACGGAAGACCAACAGCAGCA
GCAGCAACGGCAGGACTCGCCTCCGACGATGCCCGTGATCATTCCGCAGG
AACGCCTTCGAATGACTTGGAAAACTCTGCTGCTGCTTCTTCTGCCGTCG
TTGCCAACGGTAGTGCGGCTAGCGCTGGTGAAGGCGGCCATCCCGTCGAG
AAAACAACAAGAGGAAGCCGCGCGAAAAGTGCTAGAGGCAAAGCGCGCGG
GCGAGGAGGAAGGGGAAGCCGCGGTGGCAAGATGGCAACCGGCGCTGGTG
GAGGCGGGGGGGAAGGTCTACAGCCTGCGGCGCGGCAAGAACACCAGTCT
TCTCCGTCACAAACGTCCGCGTCGGAAGGAGGAGGGCCAGCTCTTGCTGC
GGTGAACGAGAACGGAAGACCAACAGCAGCAGCAGCAACGGCAGGACTCG
CCTCCGACGATGCCCGTGATCATTCCGCAGGAACGCCTTCGAATGACTTG
GAAAACTCTGCTGCTGCTTCTTCTGCCGTCGTTGCCAACGGTAGTGCGGC
TAGCGCTGGTGAAGGCGGCCATCCCGTCGAGAAAACAACAAGAGGAAGCC
GCGCGAAAAGTGCTAGAGGCAAAGCGCGCGGGCGAGGAGGAAGGGGAAGC
CGCGGTGGCAAG
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