mRNA_D-dudresnayi_contig10646.718.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10646.718.1
Unique NamemRNA_D-dudresnayi_contig10646.718.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10646.718.1 vs. uniprot
Match: A0A6H5JW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.540e-8
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = -1 
Query:    4 MERDAFTSLLSKRRTSPTTIDNSKQGRLRSSLFSSKPTGTAADKRRRAPQ------GGSRFVQCPLCEKSIHFSLAQSHVEQCSGAAVGSIDTQPK 273
            ME DAF SL S+    P      KQ     S   SK   ++A + R +P        GSRFV+CPLC KS+H SLAQ+HVE+C G+    I +  K
Sbjct:    1 MECDAFASLFSQ----PRAASKKKQA---FSSTRSKHVQSSAKRPRSSPSPSAASPSGSRFVKCPLCGKSVHSSLAQTHVERCPGSGEEPISSAAK 89
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10646.718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW62_9PHAE5.540e-841.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10646contigD-dudresnayi_contig10646:4744..5181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.888993-CDS-D-dudresnayi_contig10646:4743..51811622927570.888993-CDS-D-dudresnayi_contig10646:4743..5181Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10646 4744..5181 +
1690556811.4426482-CDS-D-dudresnayi_contig10646:4743..51811690556811.4426482-CDS-D-dudresnayi_contig10646:4743..5181Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10646 4744..5181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10646.718.1prot_D-dudresnayi_contig10646.718.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10646 4744..5181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10646.718.1

>prot_D-dudresnayi_contig10646.718.1 ID=prot_D-dudresnayi_contig10646.718.1|Name=mRNA_D-dudresnayi_contig10646.718.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=146bp
MLWLRVDTTDSGTRTLFHMRLREGKVYRFLTERALYEAGSSLRCSASFVG
CCSCWFAGKQRASQTTLLAIVNSSRRCASFGEQRRERISLHISRHRGQIQ
RSPFNRQITADEDSLTTSLLLGSIPLKLYPPTLKPSTIYYPLLSLH
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mRNA from alignment at D-dudresnayi_contig10646:4744..5181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10646.718.1 ID=mRNA_D-dudresnayi_contig10646.718.1|Name=mRNA_D-dudresnayi_contig10646.718.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at D-dudresnayi_contig10646:4744..5181+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTTTGGCTGCGTGTCGATACTACCGACAGCGGCACCAGAACATTGTT
CCACATGCGACTGCGCGAGGGAAAAGTGTATCGATTTCTCACAGAGAGGG
CACTGTACGAAGCGGGATCCTCCTTGCGGTGCTCTGCGTCGTTTGTCGGC
TGCTGTTCCTGTTGGTTTGCTGGAAAACAGAGAGCTTCTCAGACGACCCT
GCTTGCTATTGTCAATAGTAGTAGGCGATGTGCGTCGTTTGGAGAGCAGC
GACGTGAACGCATCTCTCTCCATATTTCACGCCACAGGGGTCAAATACAA
AGGAGCCCGTTTAACCGGCAAATCACAGCGGACGAGGATTCCCTGACAAC
GTCACTATTGTTGGGGTCAATACCGTTGAAGCTTTACCCACCTACGCTCA
AGCCCTCGACTATCTACTACCCGCTGCTCTCGTTGCAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10646:4744..5181+

>mRNA_D-dudresnayi_contig10646.718.1 ID=mRNA_D-dudresnayi_contig10646.718.1|Name=mRNA_D-dudresnayi_contig10646.718.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at D-dudresnayi_contig10646:4744..5181+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTTTGGCTGCGTGTCGATACTACCGACAGCGGCACCAGAACATTGTT
CCACATGCGACTGCGCGAGGGAAAAGTGTATCGATTTCTCACAGAGAGGG
CACTGTACGAAGCGGGATCCTCCTTGCGGTGCTCTGCGTCGTTTGTCGGC
TGCTGTTCCTGTTGGTTTGCTGGAAAACAGAGAGCTTCTCAGACGACCCT
GCTTGCTATTGTCAATAGTAGTAGGCGATGTGCGTCGTTTGGAGAGCAGC
GACGTGAACGCATCTCTCTCCATATTTCACGCCACAGGGGTCAAATACAA
AGGAGCCCGTTTAACCGGCAAATCACAGCGGACGAGGATTCCCTGACAAC
GTCACTATTGTTGGGGTCAATACCGTTGAAGCTTTACCCACCTACGCTCA
AGCCCTCGACTATCTACTACCCGCTGCTCTCGTTGCATATGCTTTGGCTG
CGTGTCGATACTACCGACAGCGGCACCAGAACATTGTTCCACATGCGACT
GCGCGAGGGAAAAGTGTATCGATTTCTCACAGAGAGGGCACTGTACGAAG
CGGGATCCTCCTTGCGGTGCTCTGCGTCGTTTGTCGGCTGCTGTTCCTGT
TGGTTTGCTGGAAAACAGAGAGCTTCTCAGACGACCCTGCTTGCTATTGT
CAATAGTAGTAGGCGATGTGCGTCGTTTGGAGAGCAGCGACGTGAACGCA
TCTCTCTCCATATTTCACGCCACAGGGGTCAAATACAAAGGAGCCCGTTT
AACCGGCAAATCACAGCGGACGAGGATTCCCTGACAACGTCACTATTGTT
GGGGTCAATACCGTTGAAGCTTTACCCACCTACGCTCAAGCCCTCGACTA
TCTACTACCCGCTGCTCTCGTTGCAT
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