mRNA_D-dudresnayi_contig10548.602.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10548.602.1
Unique NamemRNA_D-dudresnayi_contig10548.602.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: D8LCQ4_ECTSI (SHQ1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ4_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 9.190e-32
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 3 
Query:    3 AVVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGG-DDEGSCKAVYDPADDNGTITVHLPK 209
            AVVVCIKVPH+RVG+AETHVDG +F F+CKPYLLRL+LP+EVGG DD+GSCKAVYDP+D+NGTITV L K
Sbjct:   15 AVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEVGGEDDDGSCKAVYDPSDENGTITVTLKK 84
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BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: A0A6H5J6M6_9PHAE (SHQ1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.450e-31
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 3 
Query:    3 AVVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGG-DDEGSCKAVYDPADDNGTITV----HLP 206
            AVVVCIKVPH+RVG+AETHVDG DF F+CKPYLLRL+LP+EVGG DD+GSCKAVYDP+D+NGTITV    H P
Sbjct:   15 AVVVCIKVPHIRVGSAETHVDGTDFSFYCKPYLLRLTLPYEVGGEDDDGSCKAVYDPSDENGTITVIPGQHFP 87
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BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: A0A835YXH0_9STRA (SHQ1 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.840e-20
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 3 
Query:    6 VVVCIKVPHVRVGNAETHV--DGRDFCFFCKPYLLRLSLPHEVGGDDEGSCKAVYDPADDNGTITVHLPK 209
            V V I+VPH+RV  AETHV  DG    F+CKPYLL+L LP  V G+D+  C+AVYDPA D GT+ +HLPK
Sbjct:   16 VCVTIRVPHIRVSAAETHVEEDGCGVSFYCKPYLLKLRLPLPVRGEDDERCRAVYDPAADGGTVVLHLPK 85
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BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: A0A225WTL0_9STRA (CS domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WTL0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.770e-19
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:    6 VVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGGDDEGSCKAVYDPADDNGTITVHLPK 209
            V V + VP VRV   E +VDGRDF FFCKPYLL+L  PH+V  D+    KAVYDP  DNGTI VHLPK
Sbjct:   16 VFVHVHVPFVRVSEMEFYVDGRDFTFFCKPYLLKLHFPHQVVDDE--LAKAVYDPNKDNGTIVVHLPK 81
[Close]
BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: G4ZMP3_PHYSP (CS domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZMP3_PHYSP)

HSP 1 Score: 85.1 bits (209), Expect = 2.370e-19
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:    6 VVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGGDDEGSCKAVYDPADDNGTITVHLPK 209
            V V + VP VRV   E +VDG DF F+CKPYLL+L  PHEV  D+    KAVYDP  DNG I VHLPK
Sbjct:   16 VFVHVHVPFVRVSEMEFYVDGLDFTFYCKPYLLKLHFPHEVVDDE--LAKAVYDPNKDNGMIVVHLPK 81
[Close]
BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: W2LRC4_PHYPR (CS domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2LRC4_PHYPR)

HSP 1 Score: 88.6 bits (218), Expect = 6.180e-19
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:    6 VVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGGDDEGSCKAVYDPADDNGTITVHLPK 209
            V V + VP VRV + E +VDG DF FFCKPYLL+L  PHEV  D+    KAVYDP  DNGTI VHLPK
Sbjct:   16 VFVHVHVPFVRVSDMEFYVDGFDFTFFCKPYLLKLHFPHEVVDDE--LAKAVYDPNKDNGTIVVHLPK 81
[Close]
BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: A0A7S1U3V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3V6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.830e-18
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:    6 VVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGGDDEGSCKAVYDPADDNGTITVHLPK 209
            V V I VP +RV  AE HV+G  F F+CKPYLL+L+LP EV  D+   C+ VYD   +NGTIT HLPK
Sbjct:   16 VYVDIHVPWIRVSEAEIHVEGCAFSFYCKPYLLKLTLPGEVVDDER--CRGVYDLDKNNGTITAHLPK 81
[Close]
BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: A0A329SX69_9STRA (CS domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SX69_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.950e-18
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:    6 VVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGGDDEGSCKAVYDPADDNGTITVHLPK 209
            V V + +P VRV + E +VDG DF F+CKPYLL+L  PHEV  DD    KAVYDP  +NGTI VHLPK
Sbjct:   16 VFVHVHMPFVRVSDMEFYVDGLDFTFYCKPYLLKLHFPHEVVDDD--LAKAVYDPNKENGTIVVHLPK 81
[Close]
BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: A0A024GSK1_9STRA (CS domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSK1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.120e-18
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:    6 VVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGGDDEGSCKAVYDPADDNGTITVHLPK 209
            V V I+VP+VRV + E H+DG DF F+CKPYLL+L   H +  D+  + KAVYDP+ DNGTI  HLPK
Sbjct:   16 VYVHIRVPYVRVSDMEFHIDGPDFTFYCKPYLLKLHFSHNLVDDE--NAKAVYDPSADNGTIIAHLPK 81
[Close]
BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Match: A0A0P1AHJ9_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHJ9_PLAHL)

HSP 1 Score: 85.9 bits (211), Expect = 5.450e-18
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:    6 VVVCIKVPHVRVGNAETHVDGRDFCFFCKPYLLRLSLPHEVGGDDEGSCKAVYDPADDNGTITVHLPK 209
            V V + VP+VRV + E +VDG DF F+CKPYLL+L  P+EV  D+    KAVYDP  DNGTI +HLPK
Sbjct:   16 VFVHVHVPYVRVSDMEFYVDGVDFTFYCKPYLLKLHFPYEVMDDE--LAKAVYDPNKDNGTIVIHLPK 81
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10548.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCQ4_ECTSI9.190e-3280.00SHQ1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5J6M6_9PHAE1.450e-3178.08SHQ1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YXH0_9STRA3.840e-2060.00SHQ1 protein-domain-containing protein n=1 Tax=Tri... [more]
A0A225WTL0_9STRA1.770e-1963.24CS domain-containing protein n=1 Tax=Phytophthora ... [more]
G4ZMP3_PHYSP2.370e-1960.29CS domain-containing protein (Fragment) n=1 Tax=Ph... [more]
W2LRC4_PHYPR6.180e-1963.24CS domain-containing protein n=9 Tax=Phytophthora ... [more]
A0A7S1U3V6_9STRA2.830e-1857.35Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A329SX69_9STRA2.950e-1860.29CS domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A024GSK1_9STRA4.120e-1857.35CS domain-containing protein n=1 Tax=Albugo candid... [more]
A0A0P1AHJ9_PLAHL5.450e-1858.82Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10548contigD-dudresnayi_contig10548:1272..4934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size211
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927558.0694127-CDS-D-dudresnayi_contig10548:1271..13751622927558.0694127-CDS-D-dudresnayi_contig10548:1271..1375Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10548 1272..1375 -
1690556806.5537574-CDS-D-dudresnayi_contig10548:1271..13751690556806.5537574-CDS-D-dudresnayi_contig10548:1271..1375Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10548 1272..1375 -
1622927558.0836942-CDS-D-dudresnayi_contig10548:4828..49341622927558.0836942-CDS-D-dudresnayi_contig10548:4828..4934Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10548 4829..4934 -
1690556806.563252-CDS-D-dudresnayi_contig10548:4828..49341690556806.563252-CDS-D-dudresnayi_contig10548:4828..4934Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10548 4829..4934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10548.602.1prot_D-dudresnayi_contig10548.602.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10548 1272..4934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10548.602.1

>prot_D-dudresnayi_contig10548.602.1 ID=prot_D-dudresnayi_contig10548.602.1|Name=mRNA_D-dudresnayi_contig10548.602.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=70bp
MPSLFASRCLTCEWVTRRHTWMGEIFVFSASPIYSGFLCLTRSAAMTRAA
ARLSMTPPTTTVPLRSTCPR
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mRNA from alignment at D-dudresnayi_contig10548:1272..4934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10548.602.1 ID=mRNA_D-dudresnayi_contig10548.602.1|Name=mRNA_D-dudresnayi_contig10548.602.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3663bp|location=Sequence derived from alignment at D-dudresnayi_contig10548:1272..4934- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCGTCGTTGTTTGCATCAAGGTGCCTCACGTGCGAGTGGGTAACGCG
GAGACACACGTGGATGGGCGAGATTTTTGTTTTTTCTGCAAGCCCTATCT
ACTCAGGTGTGTGTTTATGTCTCTTTCTGGGTGCTGCGCCAAGAGAGGAC
AGGTTGTGGAGGGCTACTATTATTATTGTAGCTCCTCTACTACAATAGTC
GTCCTGCTGTGGTATGTACAACAACAGGGAGTACTCGTACTACGAGTACT
ACTATCGACTATCGATACTACTGACTGTAGGTGTACTCAGGTTAGATAGT
CTCCCATATATCATACCGTTTGTACTCTCATAGCATGGCCTCTGTCTTTG
GACCGTGTCTTGCTGCACGTAAATGGGTGAACTGTTGTCTGTACGCACAG
CAGCACAACAAACAGTACTACTACTACTACTACTACTACACTGTTGTTGT
AATACTGTACACCAGCAACTGTATCACCACCAATTTACTGTACCACATAC
TACTATTGTACGACTGTACGAGTACGGTTGTACGCTATATTCTGTGCTGT
AGACTACTATACTACTACTACTACTGTGCACTGCATGACGAGTACGAGTA
CATGTTGCAGGAGGTAGAGGTGAACAAACGTCTGTGTACGTGCATACGAA
ATATTCATGTACTTCGTATGATACGTAGGTGGCTATGATAGCGTACCCCC
CCCCTGCCCCCTTCGTGTACAAGTAGGGGACCTGGACTTGCCAGAAAGAA
GAAAGGGGTACTCCGGTAGTGGGGGGCACGAGGAAGAAGATACACAGATG
TACCCTTGTGGCAAGCCCGAAGATAGTATTAATAGTAGTAGAACTCACAT
AGTGGGAGAATGTGAACTGTACATATGAGGAACGGGATGAGTTGGAGGAG
GAGATGAGGCAAATAGACGAATGTGACATAAGTTTGGTACCCTAGATACC
AGCGAGAAAACGACCGCTACGAGAATCCTAGGAGATAGATGGTGGCCACA
AAAGGCGAACCAGGAAGAGGATAAGATAAGCACAAAGTTGTCTCATGTAA
GATATGGCAAAAACGTAAAGAGCGCCCAAATGTTGGAGGTGTCTGTCTCG
AAAGGGATGCGTGGTCAATGGTCAAATGACTAAGGAAAGCAACAAATGAG
TACGCCCCCCTACCCCCCCCCCCCATGCTTGTATCGGCGGGGAGGGATGG
CGCCCACCATTATTGCGCGTCGCAAACGACTGCAGAAAGCGCCTAGCGTG
TAAAATATGCACCATTCGACGCGAGTCGACGAGGGAAGAAAGTGCTGCAC
GACGCTTCTCTCGCGATAAAAGTATAGGTCAGTAGAACCGTAGTGCGGAC
GGGAGGAGGCGTGCCTGCTATGTGGCCCCGGATCTGAGTTACGAAGAGAG
ATGGAAATTGGCTCTCACAAAAATGTAAGTCGTGGGTGGCGGTATGGTTT
GGGTTGAGGTACGCCCCCATCCATGTCCTATGAATCGCCCGTGCGTGGCC
CGTGCGTAAGTGTGCAGGCGCGGCTGTAGTGCCTGAACACGCGCGGAGCT
CGACGGCGCGTTTCATCGAGTACTCACACTACCCGGGGGGGGGGGGCGTA
CTCATGTGTTGCTTACCTTAAATCATTTGACCATTGACCACGCATCCCTT
TCGAGACGGAGCACCGTTCCTACTCCCAATAGAGACACCTCCATCATTTG
GGCGCTCTTTAAGTTTTTTAAAACATGTTACATAAACAACCTTTTGGTTA
TCTCATCCCCTTCCTGTTCACCTTTTGTGGCCACCTGTTCGTATACACCC
AGAATGGGTATGACCGATGTGCCTCGTAGATCAAGGAATCACGTTAACAA
CGTAGATTAGTTCACAAAGCATCGAGAAAGGAAAGAGGAGAAACAGAGAG
TGGCCTCCACGAGGACACCCAGCACACAAATTCACCGCTCGCTCTATAGT
ACGCGTCGCAATCGTCGTGTTACGTGGAGCGATCGTATTGGCCAGAATTT
AAACACGTCAAATACAAGTTCAAGTACGTACGAGAACGAACACCACCATC
CATCTAGGATATCAATCGTTTTCTCGCTATTATCTAGGGTACCAAACTTC
TCACAAAGTTACACCTTATCCAGGGGGGGGGCGGGGGGTGATCGCATTCA
ACGTTACCCCGTCGGGTGACTACCTCCAAAGACCAACGGCATCCAACGTA
CCTGCTCTGTAATGGCAATGTTGTGGTCTACAATAGGGTTGGCATCTTGA
ATTCTAAGCAATCACGACTCGGCTGTCAATAGCCGTGGGAGGTTGTGGAA
CTTGGAAGGCTTATTTTTACCCGTCCGCCGAAGGATTACAACAATGGTTG
AAAAACATGGATGGAAATGTAAAAACGAACGCGGTCACTATGGCAGTGTG
CCTTATTAGGGTCGGTTCGTCCGTTCCAACGGTGCAAAATATTGAGTCCT
GTCTTATGACCGAAGTATGACCGTGTGCCGTATTAAGGTCGGTTCGTCGT
TTCTAACGGTGTAAAAAAAAAAAGTCCGGTTTCGTGACGTGTGTGTGTGT
GTGTGTTTTTTTTTTTGCCGATTTTTTTTTGTGAAAAGTCATGAGTTTAA
GATGTATTCGAATTTTTTTATCGGTTTCATAATCACCAATCACGATTGCG
GACTCCTCTTTTATCTGGGAGTCGTCTTTTTTTTTTTTTTTTTTTTTTTG
TCATACGGTTCGTGACTATTTTGCCCAGTAGGCTTTTCAATGTTGTAAGA
CGGAACTTTACAGGAACTTTTACAGAGGTTTTGACTTGCTATTAGTATAG
ATTCGTTCGTTAGGGTTCGGGTTAGGGTTAGTGGCAGAATTTTCCGAGAA
TGCTGAGCAGCCCACGTTGGTACGAATCATATGTAGAAAAGAAAGTTCCG
TCCTACAATGTTGTTAAGGCGGCTCGTTTTGGCGGTTAGAACTGACCTTT
TACAGTGATGAAAGTCGACGAGCTATGGGAGTGCCAAACCCTGTTCGCGA
TAGAAGAGCAGGCACCGAGGGGGAAAGAGACAAGCCGCCTGTGACCGTGG
CTTGCTCAGACAGCGGGCGCGCTGAGCGATGAGCTATCCGAGCTCCCTGT
GAGCTTGGACTTGAGAGGTTAAAGTTATGGATAACAAAAAGATAAAAATA
AGAAACAAGATAAGAAACAAAACCAAAAACGGTATTTCTGCTGCACCTTC
AAGTAGTAGTTGTGTGTGCCATTTATCATTTTGCGTGAACGTGTGAACGT
CCCGTCAGTAGACTTTATACAGCTTTACGGTGTTCTCGGTGTTCGGGCGC
TGATTTTATGTGTGTGTGTTTTTTTTTTACCTGCTGTTTTTTTTACTTGG
CTTTAGTATGGTGTGGTCGTTGGGTTAGTTGTAGAAAATGCTGCGAACTG
CTGAACAGCCCACGTTGGTATACTATTATTAGCATACTAAAACGAACAGC
TCCTAAGTATCTATCCTCCTGAACAAGCTATAAAGATAGGCTCACGTCCT
TCCTACCTTATCTTCCTGTGCATTTTGTGTGTCGTCCTTTTGGTTTTCTT
TGTGAGCAGGCTTTCTCTGCCTCACGAGGTCGGCGGCGATGACGAGGGCA
GCTGCAAGGCTGTCTATGACCCCGCCGACGACAACGGTACCATTACGGTC
CACTTGCCCAAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10548:1272..4934-

>mRNA_D-dudresnayi_contig10548.602.1 ID=mRNA_D-dudresnayi_contig10548.602.1|Name=mRNA_D-dudresnayi_contig10548.602.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at D-dudresnayi_contig10548:1272..4934- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCCGTCGTTGTTTGCATCAAGGTGCCTCACGTGCGAGTGGGTAACGCG
GAGACACACGTGGATGGGCGAGATTTTTGTTTTTTCTGCAAGCCCTATCT
ACTCAGATGCCGTCGTTGTTTGCATCAAGGTGCCTCACGTGCGAGTGGGT
AACGCGGAGACACACGTGGATGGGCGAGATTTTTGTTTTTTCTGCAAGCC
CTATCTACTCAGGCTTTCTCTGCCTCACGAGGTCGGCGGCGATGACGAGG
GCAGCTGCAAGGCTGTCTATGACCCCGCCGACGACAACGGTACCATTACG
GTCCACTTGCCCAAGGGCTTTCTCTGCCTCACGAGGTCGGCGGCGATGAC
GAGGGCAGCTGCAAGGCTGTCTATGACCCCGCCGACGACAACGGTACCAT
TACGGTCCACTTGCCCAAGG
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