mRNA_D-dudresnayi_contig10524.576.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10524.576.1
Unique NamemRNA_D-dudresnayi_contig10524.576.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10524.576.1 vs. uniprot
Match: A0A482SQ00_9ARCH (G_PROTEIN_RECEP_F1_2 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ00_9ARCH)

HSP 1 Score: 219 bits (558), Expect = 1.050e-67
Identity = 99/168 (58.93%), Postives = 130/168 (77.38%), Query Frame = 1 
Query:   10 NSVPTNACFILSPLMIFTRMASLAWTCVISFNVLMSVEKRKWLWQGGNKAYIQYHNRYYFAIFLLAAPGTILTLVKQHSSDDTSDLGCSPNYEALGVWYEVFFPEVLPILMGFLCNVYVFLNVYGKISKSAYPQSVRKRRKRIMYHYIIVCIICWVPTVLNYMIELIG 513
            ++VP   C I+SP +IFTRMASL WT +ISFNVLMSV+KRKW W+   + +  Y  RYY  I + A PGT+L + KQ++S D +DLGCSP YE LGVWYE+ FPEVLPI+  F CN+YVF +V  +++K+  PQSVRK+RKRIMYHY+IVCI+CW+PT+L Y++E+ G
Sbjct:   75 SNVPDPICLIVSPTIIFTRMASLFWTVMISFNVLMSVQKRKWFWKSQERNFDGYRMRYYALICVFALPGTVLNMAKQYASRDNADLGCSPRYEPLGVWYEILFPEVLPIMFAFCCNMYVFFSVRHRMAKAPVPQSVRKKRKRIMYHYVIVCILCWIPTILLYLMEIGG 242
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10524.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A482SQ00_9ARCH1.050e-6758.93G_PROTEIN_RECEP_F1_2 domain-containing protein (Fr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10524contigD-dudresnayi_contig10524:4350..4862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size514
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.660679-CDS-D-dudresnayi_contig10524:4349..48621622927555.660679-CDS-D-dudresnayi_contig10524:4349..4862Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10524 4350..4862 +
1690556805.654177-CDS-D-dudresnayi_contig10524:4349..48621690556805.654177-CDS-D-dudresnayi_contig10524:4349..4862Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10524 4350..4862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10524.576.1prot_D-dudresnayi_contig10524.576.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10524 4350..4862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10524.576.1

>prot_D-dudresnayi_contig10524.576.1 ID=prot_D-dudresnayi_contig10524.576.1|Name=mRNA_D-dudresnayi_contig10524.576.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=171bp
SPSNSVPTNACFILSPLMIFTRMASLAWTCVISFNVLMSVEKRKWLWQGG
NKAYIQYHNRYYFAIFLLAAPGTILTLVKQHSSDDTSDLGCSPNYEALGV
WYEVFFPEVLPILMGFLCNVYVFLNVYGKISKSAYPQSVRKRRKRIMYHY
IIVCIICWVPTVLNYMIELIG
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mRNA from alignment at D-dudresnayi_contig10524:4350..4862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10524.576.1 ID=mRNA_D-dudresnayi_contig10524.576.1|Name=mRNA_D-dudresnayi_contig10524.576.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at D-dudresnayi_contig10524:4350..4862+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCTCCTTCAAATTCGGTGCCGACAAATGCATGTTTTATATTGAGCCCACT
AATGATTTTCACTAGAATGGCTAGTTTGGCGTGGACTTGCGTTATATCGT
TTAATGTGTTAATGTCTGTGGAAAAACGAAAATGGTTGTGGCAAGGTGGT
AACAAAGCTTACATTCAGTATCACAACCGGTATTATTTTGCTATTTTCCT
ATTAGCTGCGCCGGGTACAATATTAACTCTCGTTAAACAGCACTCCAGTG
ATGATACATCAGACTTAGGCTGTTCGCCAAACTATGAGGCCTTGGGTGTG
TGGTATGAAGTGTTTTTCCCTGAGGTTCTCCCTATCCTCATGGGTTTTCT
GTGCAATGTGTATGTCTTTCTGAACGTATACGGCAAAATCTCGAAATCAG
CTTATCCACAATCAGTGCGGAAAAGACGGAAACGCATAATGTATCACTAT
ATTATTGTGTGTATTATCTGCTGGGTCCCTACGGTGCTGAACTATATGAT
CGAACTGATCGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10524:4350..4862+

>mRNA_D-dudresnayi_contig10524.576.1 ID=mRNA_D-dudresnayi_contig10524.576.1|Name=mRNA_D-dudresnayi_contig10524.576.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at D-dudresnayi_contig10524:4350..4862+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCTCCTTCAAATTCGGTGCCGACAAATGCATGTTTTATATTGAGCCCACT
AATGATTTTCACTAGAATGGCTAGTTTGGCGTGGACTTGCGTTATATCGT
TTAATGTGTTAATGTCTGTGGAAAAACGAAAATGGTTGTGGCAAGGTGGT
AACAAAGCTTACATTCAGTATCACAACCGGTATTATTTTGCTATTTTCCT
ATTAGCTGCGCCGGGTACAATATTAACTCTCGTTAAACAGCACTCCAGTG
ATGATACATCAGACTTAGGCTGTTCGCCAAACTATGAGGCCTTGGGTGTG
TGGTATGAAGTGTTTTTCCCTGAGGTTCTCCCTATCCTCATGGGTTTTCT
GTGCAATGTGTATGTCTTTCTGAACGTATACGGCAAAATCTCGAAATCAG
CTTATCCACAATCAGTGCGGAAAAGACGGAAACGCATAATGTATCACTAT
ATTATTGTGTGTATTATCTGCTGGGTCCCTACGGTGCTGAACTATATGAT
CGAACTGATCGGGTCTCCTTCAAATTCGGTGCCGACAAATGCATGTTTTA
TATTGAGCCCACTAATGATTTTCACTAGAATGGCTAGTTTGGCGTGGACT
TGCGTTATATCGTTTAATGTGTTAATGTCTGTGGAAAAACGAAAATGGTT
GTGGCAAGGTGGTAACAAAGCTTACATTCAGTATCACAACCGGTATTATT
TTGCTATTTTCCTATTAGCTGCGCCGGGTACAATATTAACTCTCGTTAAA
CAGCACTCCAGTGATGATACATCAGACTTAGGCTGTTCGCCAAACTATGA
GGCCTTGGGTGTGTGGTATGAAGTGTTTTTCCCTGAGGTTCTCCCTATCC
TCATGGGTTTTCTGTGCAATGTGTATGTCTTTCTGAACGTATACGGCAAA
ATCTCGAAATCAGCTTATCCACAATCAGTGCGGAAAAGACGGAAACGCAT
AATGTATCACTATATTATTGTGTGTATTATCTGCTGGGTCCCTACGGTGC
TGAACTATATGATCGAACTGATCGGG
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