mRNA_D-dudresnayi_contig10016.55.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10016.55.1
Unique NamemRNA_D-dudresnayi_contig10016.55.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10016.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10016contigD-dudresnayi_contig10016:4639..5011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size373
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.0137484-CDS-D-dudresnayi_contig10016:4638..49471622927503.0137484-CDS-D-dudresnayi_contig10016:4638..4947Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10016 4639..4947 +
1690556780.6319306-CDS-D-dudresnayi_contig10016:4638..49471690556780.6319306-CDS-D-dudresnayi_contig10016:4638..4947Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10016 4639..4947 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.032951-UTR-D-dudresnayi_contig10016:4947..50111622927503.032951-UTR-D-dudresnayi_contig10016:4947..5011Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10016 4948..5011 +
1690556780.6430175-UTR-D-dudresnayi_contig10016:4947..50111690556780.6430175-UTR-D-dudresnayi_contig10016:4947..5011Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10016 4948..5011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10016.55.1prot_D-dudresnayi_contig10016.55.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10016 4639..4947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10016.55.1

>prot_D-dudresnayi_contig10016.55.1 ID=prot_D-dudresnayi_contig10016.55.1|Name=mRNA_D-dudresnayi_contig10016.55.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=103bp
VPYLVAPRKKKSATGDLKRRRRSLLGTCPESLHFAHNQIVYADIPLSFLA
VTQNRSCKPRYKTPGKCSNALLLQQRITRVHQCCRRATAKSEESLLVFAL
FC*
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mRNA from alignment at D-dudresnayi_contig10016:4639..5011+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10016.55.1 ID=mRNA_D-dudresnayi_contig10016.55.1|Name=mRNA_D-dudresnayi_contig10016.55.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=373bp|location=Sequence derived from alignment at D-dudresnayi_contig10016:4639..5011+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGCCTTATTTAGTCGCACCTCGGAAAAAAAAAAGTGCCACGGGTGATCT
CAAAAGACGGAGACGGAGTCTGTTGGGCACGTGCCCGGAATCACTGCACT
TTGCTCACAACCAAATAGTATATGCCGATATCCCGTTGTCTTTCCTTGCT
GTGACACAAAACCGTTCCTGTAAACCCCGTTACAAGACGCCCGGCAAGTG
TAGCAATGCTCTCTTATTGCAGCAGCGGATTACACGGGTACATCAATGTT
GCAGGCGTGCGACCGCGAAGAGCGAGGAGAGCCTGCTTGTGTTCGCTTTG
TTTTGCTGACTCACGGATGTGAAACCTTGTTGGTACACCAGTGCGACCCA
AAAAATCATGTGTTTTCTTTTTC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10016:4639..5011+

>mRNA_D-dudresnayi_contig10016.55.1 ID=mRNA_D-dudresnayi_contig10016.55.1|Name=mRNA_D-dudresnayi_contig10016.55.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at D-dudresnayi_contig10016:4639..5011+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGCCTTATTTAGTCGCACCTCGGAAAAAAAAAAGTGCCACGGGTGATCT
CAAAAGACGGAGACGGAGTCTGTTGGGCACGTGCCCGGAATCACTGCACT
TTGCTCACAACCAAATAGTATATGCCGATATCCCGTTGTCTTTCCTTGCT
GTGACACAAAACCGTTCCTGTAAACCCCGTTACAAGACGCCCGGCAAGTG
TAGCAATGCTCTCTTATTGCAGCAGCGGATTACACGGGTACATCAATGTT
GCAGGCGTGCGACCGCGAAGAGCGAGGAGAGCCTGCTTGTGTTCGCTTTG
TTTTGCTGAGTGCCTTATTTAGTCGCACCTCGGAAAAAAAAAAGTGCCAC
GGGTGATCTCAAAAGACGGAGACGGAGTCTGTTGGGCACGTGCCCGGAAT
CACTGCACTTTGCTCACAACCAAATAGTATATGCCGATATCCCGTTGTCT
TTCCTTGCTGTGACACAAAACCGTTCCTGTAAACCCCGTTACAAGACGCC
CGGCAAGTGTAGCAATGCTCTCTTATTGCAGCAGCGGATTACACGGGTAC
ATCAATGTTGCAGGCGTGCGACCGCGAAGAGCGAGGAGAGCCTGCTTGTG
TTCGCTTTGTTTTGCTGA
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