mRNA_D-dudresnayi_contig9988.28793.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9988.28793.1
Unique NamemRNA_D-dudresnayi_contig9988.28793.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9988.28793.1 vs. uniprot
Match: UPI0005C9E314 (probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C9E314)

HSP 1 Score: 50.1 bits (118), Expect = 3.350e-6
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 FISSLHIVSADLDGPIPECICMFTQLSVLVIHSCNASGPFPFWIDALAGLQKLDLSDNRLTGTV 192
            ++  ++++  DL G IP      T+L  LV+ SCN +G  P +I  +  L  LDLS NRL GT+
Sbjct:   39 YLKQVNLLRNDLSGSIPR-EWASTKLEYLVLRSCNITGKIPEYISTMTNLTVLDLSFNRLEGTI 101
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BLAST of mRNA_D-dudresnayi_contig9988.28793.1 vs. uniprot
Match: A0A699YZT6_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YZT6_HAELA)

HSP 1 Score: 49.7 bits (117), Expect = 2.150e-5
Identity = 25/75 (33.33%), Postives = 38/75 (50.67%), Query Frame = 1 
Query:    4 ISSLHIVSADLDGPIPECICMFTQLSVLVIHSCNASGPFPFWI----------DALAG--LQKLDLSDNRLTGTV 192
            ++++HI   +LDGP+P   C    L    +     +GP P W+            L G  +Q+LDLS NRL+GT+
Sbjct:   60 LTTVHITDVNLDGPVPRQFCALRNLREFDLDGGQLTGPIPRWLLEPNPDPAANGTLCGSNIQELDLSSNRLSGTI 134
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BLAST of mRNA_D-dudresnayi_contig9988.28793.1 vs. uniprot
Match: A0A383VI45_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VI45_TETOB)

HSP 1 Score: 48.5 bits (114), Expect = 5.630e-5
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    4 ISSLHIVSADLDGPIPECICMFTQLSVLVIHSCNA----SGPFPFWIDALAGL-QKLDLSDNRLTGTV 192
            ++S HI S  ++GP+P+  C+   L              +GP P WID    L ++LDLS+NRLTGT+
Sbjct:   63 VTSSHITSEKVNGPVPKEFCLLNHLREFDFGGREGLGYLTGPIPNWIDNCFPLIEELDLSNNRLTGTL 130
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9988.28793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0005C9E3143.350e-639.06probable leucine-rich repeat receptor-like serine/... [more]
A0A699YZT6_HAELA2.150e-533.33Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
A0A383VI45_TETOB5.630e-538.24Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9988contigD-dudresnayi_contig9988:642..833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.934412-CDS-D-dudresnayi_contig9988:641..8331622930961.934412-CDS-D-dudresnayi_contig9988:641..833Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9988 642..833 +
1690557981.3392146-CDS-D-dudresnayi_contig9988:641..8331690557981.3392146-CDS-D-dudresnayi_contig9988:641..833Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9988 642..833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9988.28793.1prot_D-dudresnayi_contig9988.28793.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9988 642..833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9988.28793.1

>prot_D-dudresnayi_contig9988.28793.1 ID=prot_D-dudresnayi_contig9988.28793.1|Name=mRNA_D-dudresnayi_contig9988.28793.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=64bp
FISSLHIVSADLDGPIPECICMFTQLSVLVIHSCNASGPFPFWIDALAGL
QKLDLSDNRLTGTV
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mRNA from alignment at D-dudresnayi_contig9988:642..833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9988.28793.1 ID=mRNA_D-dudresnayi_contig9988.28793.1|Name=mRNA_D-dudresnayi_contig9988.28793.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at D-dudresnayi_contig9988:642..833+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTTATTTCTTCTCTTCATATCGTCAGTGCAGACCTGGACGGGCCCATACC
CGAGTGCATCTGCATGTTCACGCAGCTGTCCGTGCTGGTGATCCACAGCT
GCAATGCCAGCGGCCCCTTCCCCTTCTGGATCGACGCGCTGGCCGGTCTG
CAGAAGCTCGACCTGTCCGACAACCGCCTCACAGGTACAGTA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9988:642..833+

>mRNA_D-dudresnayi_contig9988.28793.1 ID=mRNA_D-dudresnayi_contig9988.28793.1|Name=mRNA_D-dudresnayi_contig9988.28793.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at D-dudresnayi_contig9988:642..833+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTTATTTCTTCTCTTCATATCGTCAGTGCAGACCTGGACGGGCCCATACC
CGAGTGCATCTGCATGTTCACGCAGCTGTCCGTGCTGGTGATCCACAGCT
GCAATGCCAGCGGCCCCTTCCCCTTCTGGATCGACGCGCTGGCCGGTCTG
CAGAAGCTCGACCTGTCCGACAACCGCCTCACAGGTACAGTATTTATTTC
TTCTCTTCATATCGTCAGTGCAGACCTGGACGGGCCCATACCCGAGTGCA
TCTGCATGTTCACGCAGCTGTCCGTGCTGGTGATCCACAGCTGCAATGCC
AGCGGCCCCTTCCCCTTCTGGATCGACGCGCTGGCCGGTCTGCAGAAGCT
CGACCTGTCCGACAACCGCCTCACAGGTACAGTA
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