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Homology
BLAST of mRNA_D-dudresnayi_contig9975.28786.1 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE) HSP 1 Score: 126 bits (317), Expect = 2.800e-30 Identity = 76/179 (42.46%), Postives = 95/179 (53.07%), Query Frame = 1
Query: 1 GLDALEAAGLRRGRPAVVDNFKPTYLDDECEKDKENG------------------------RHAASLAPSPPSSLISPVGSPGELDAMGEVRLESNGFVGNGVARGTTGVGGDKDGTVGSLLWRLLSERFPQYVNKGLEDEPLL--QGKFPTLGFKKENPNETRSFYRRAEQGIRIRGS 459
GL+ALE+AGLRRGR AV+D FKPTY+D+E E + L +PPSS P +PG+ ++G SLLWR+LS++FP Y+N+GLED + GKFPT+GFKKENPNE+RS YRRAEQGIRIRGS
Sbjct: 1711 GLEALESAGLRRGRSAVIDQFKPTYIDEEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQQVHPLPSAPPSSPTDPSATPGKAG---------------------------EEGYGCSLLWRILSDKFPHYINQGLEDTQVQVPNGKFPTIGFKKENPNESRSNYRRAEQGIRIRGS 1862
BLAST of mRNA_D-dudresnayi_contig9975.28786.1 vs. uniprot
Match: D8LHL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL1_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 1.180e-21 Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query: 286 SLLWRLLSERFPQYVNKGLEDEPLL--QGKFPTLGFKKENPNETRSFYRRAEQGIRIRGS 459
SLLWR+LSE+FP Y+N+GLED + GKFPT+GFKKENPNE+RS YRRAEQGIRIRGS
Sbjct: 123 SLLWRILSEKFPHYINQGLEDTQVQVPNGKFPTIGFKKENPNESRSNYRRAEQGIRIRGS 182
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-26_003540.1 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 570 |
| Cds size | 462 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930960.7287722-UTR-D-dudresnayi_contig9975:3698..3804 | 1622930960.7287722-UTR-D-dudresnayi_contig9975:3698..3804 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9975 3699..3804 + |
| 1690557980.934518-UTR-D-dudresnayi_contig9975:3698..3804 | 1690557980.934518-UTR-D-dudresnayi_contig9975:3698..3804 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9975 3699..3804 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9975.28786.1 >prot_D-dudresnayi_contig9975.28786.1 ID=prot_D-dudresnayi_contig9975.28786.1|Name=mRNA_D-dudresnayi_contig9975.28786.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=154bp
GLDALEAAGLRRGRPAVVDNFKPTYLDDECEKDKENGRHAASLAPSPPSS
LISPVGSPGELDAMGEVRLESNGFVGNGVARGTTGVGGDKDGTVGSLLWR
LLSERFPQYVNKGLEDEPLLQGKFPTLGFKKENPNETRSFYRRAEQGIRI
RGS* back to topmRNA from alignment at D-dudresnayi_contig9975:973..3804+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9975.28786.1 ID=mRNA_D-dudresnayi_contig9975.28786.1|Name=mRNA_D-dudresnayi_contig9975.28786.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2832bp|location=Sequence derived from alignment at D-dudresnayi_contig9975:973..3804+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGATTGGACGCGCTCGAGGCGGCGGGTTTGCGGCGGGGGCGTCCGGCCGT
TGTAGACAACTTCAAGCCTACCTACCTAGACGACGAGTGCGAAAAGGACA
AGGAGAACGGACGCCATGCGGCGTCCCTCGCCCCGTCGCCGCCTTCATCC
TTGATCTCGCCTGTGGGATCACCCGGAGAATTAGATGCGATGGGGGAGGT
TCGCCTAGAGAGTAATGGCTTTGTCGGGAACGGGGTTGCGAGGGGGACGA
CTGGAGTTGGGGGTGATAAGGTGAGACGTGCTTTTGTGTTCTGTGTTTTT
GGTGTTTTGGCGTGAGACGGTGCTGACACTCGCTTTTTTTGTGCTGTTGT
TACGCGTTGTCTATTTTTGTTAAGAAGGCCGCGTTGCTATCTATTATTTG
TAGAGGCAGCAATTTCTGTCAACCAATAGTAATGCCCCGAGTTAGTTTTT
GCGAACAGCGTGTACATGTGTGCGTGCTCCCCGTGACCGCCATCGTTTTC
ACTCTACCAGCGGCACGATGTGCACCTTGTCGTTTTATTCCTTCCTTCCT
TGCTGAGTATGATGCCATGGTATGTACCGGAGTTTCAGATGTTTGCCGTT
GTTTTTGTGGGTTTCCTCCCGACGTGTCCTTACTCTCTTTGATGGAATTG
ACGTCATGGTTCATTCTAAACGACCTGCCGTTGCACTTGTGTTTTTGGCG
CCCTCTTGCTGTTTTATTTGTACTTGTGGCCTTCTCAGGACGGAACTGTG
GGCTCTCTTCTTTGGAGACTGCTCAGCGAACGATTCCCCGTAAGTGCCAA
AGGCGTTTCTGTGTTCAGGTTTTGCAAGAACGCAGGGATGTTATGCGGGG
GGCGGGGGGGGGGCGGGGGGATAGGCTGTTTTTTGTCATCGCCGAGAATC
CCGAATAAAACACTCTAATCGCTGTACAACGAAAACGACTCGCTTTGGAC
ACGATTTATAGCTTTCATGGGCTGTTTTTTGTACGGTAGAGTGTTTTTGT
TATTTTTTTTTTGTGGGTGAAGCAGTCGTGGCATGGACTACAAGGTATGT
CTCAAAGAGAGGCATATTAGTAAAGTCTTACACGGCAGGCATTATTTTTA
CATTTGATTTCCCCCCCCCCCCTTATCATCCGGCGGGTGGGTATATAGAT
ATATAGCCTAAGCTCCTAAACGCCCGCGGCTATGGTTGCCGTTACAGCGC
GGGTTCGTCGGGTGCGCTTCTTCTCCTATAGGAGTATCAGGAACTGGAGG
TAGTCACCCCAGGAGGCAACGTGTGAAGTTTGTCGTAATGTATTTTCCCT
TCCTAAAGCTATCAGTTGTACTAGTGTGGCGAGAAGCTATACTGTAAAGG
GCGCGAACCCCCCCCCCGCCCCCGCGCGCGCGCCGGATTTTAGTGTTTTT
TCCAAGTGAAGAGGCAGGGTGGCGTATGTACCAGACATAAATTAACGTTG
TTTTTTCTTGAAGGTGTTCCTTTTATTTTGAGTTGTTTTTGGTGTGTTGT
CTGTGTGCGTGTGTGCTTTGGTAAAACTATCATGGAGCTCTTAATATATG
TAGCTGGTATACTTGTATATTTGGCAGGGCCAGCAGCTGAAGCAACGGCA
GTACGAAGCAACAGCAATTGATCGTTTTTATTTTGCAAAAGGAAACCTCG
GCGAGCCACGAAATGAACGCTGTTATTGCTGTTGATGGTATTATAGGTAC
TTGCTGCTATACGTTAATAATGCTTTGTGCGCCATCGTGTGTGCGTGTGC
GTGATTTCGTTGATTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTCAAAAAGGGTTGTGGGTTTGAACCCTTTTTTCAAGGTAATTTC
CGGTCTTTTGTATNNNNNNNNNNTTTTTATAGTTTCTGGCAGCGGGACGT
TAAGAAGGGTTTGTGCGTCATCGTGTGTGCGTGTGCGTGATTTCGTTGAT
TTGTTTTTTTTTTTTTTTTTTCGCCTTTCTGCAGCAATACGTCAACAAGG
GTTTGGAGGATGAACCCCTGCTGCAAGGGAAGTTCCCGACATTGGGATTC
AAGAAGGTAAAGGCGGGCGTACATGACCACTGTGCAGTACAGCGGGCAAA
AGGGAGAAGGGAAGCGTGTATGCAGCAGAAAACGCAGTTTGCGCTGTTTT
GTTTGAGAAAGGAACCGAAGATGTGTGAAAGCAAGCTGGAAATTGTATCC
CTGTTGTCTATATACCTCCTACTACAGAAGTATACGAGTATATACTTGGT
ACTTACTTTGAAGTATACCGAGAGCATAGTTTGCTCGGTTTCAACTGGCT
TTCGACAAAAGTATGCGTTTCCTTTTGCCGCGGTTGGATGCAGTGCTGTG
TTGTGGTAGTTGACAGTGCTGTAGTATGTCCGTTCACATTTACCCTGCAT
GCCGCAGTTTGTATCTATATGTGTATTTTACCTACGAGTATAGTACTGTA
GACTACTGCAGCCTATATACACACGGTATGGATGCTTTGTTAAAACAATG
GTGTATACCAGGTATTATGTGGTTTGTTTTGTTGCGAACAGTAAATATGC
GGCATGCAACACTTGAAAGAAAATGACATTACTTGTGCCCGCCCGTACTG
GTGCATATATGTTCTTCGTTGTCAACCCCCGTGTCGCCCGCGCCTTCCTC
CTCACAGGAAAACCCGAACGAAACACGCAGCTTCTACCGGAGAGCAGAGC
AAGGGATCCGGATACGTGGGAGCTAGTGCTTTTTGTAACGGCAGGGTATT
TTTCGTGCGTAAAAGCCTTGTTTTTTATTGATTGGAAACCCCTAGGGTTT
GTAGTGTCCAGCAGGCGGTGGTGTGGGCGAGG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9975:973..3804+ >mRNA_D-dudresnayi_contig9975.28786.1 ID=mRNA_D-dudresnayi_contig9975.28786.1|Name=mRNA_D-dudresnayi_contig9975.28786.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at D-dudresnayi_contig9975:973..3804+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGATTGGACGCGCTCGAGGCGGCGGGTTTGCGGCGGGGGCGTCCGGCCGT
TGTAGACAACTTCAAGCCTACCTACCTAGACGACGAGTGCGAAAAGGACA
AGGAGAACGGACGCCATGCGGCGTCCCTCGCCCCGTCGCCGCCTTCATCC
TTGATCTCGCCTGTGGGATCACCCGGAGAATTAGATGCGATGGGGGAGGT
TCGCCTAGAGAGTAATGGCTTTGTCGGGAACGGGGTTGCGAGGGGGACGA
CTGGAGTTGGGGGTGATAAGGGATTGGACGCGCTCGAGGCGGCGGGTTTG
CGGCGGGGGCGTCCGGCCGTTGTAGACAACTTCAAGCCTACCTACCTAGA
CGACGAGTGCGAAAAGGACAAGGAGAACGGACGCCATGCGGCGTCCCTCG
CCCCGTCGCCGCCTTCATCCTTGATCTCGCCTGTGGGATCACCCGGAGAA
TTAGATGCGATGGGGGAGGTTCGCCTAGAGAGTAATGGCTTTGTCGGGAA
CGGGGTTGCGAGGGGGACGACTGGAGTTGGGGGTGATAAGGACGGAACTG
TGGGCTCTCTTCTTTGGAGACTGCTCAGCGAACGATTCCCCGACGGAACT
GTGGGCTCTCTTCTTTGGAGACTGCTCAGCGAACGATTCCCCCAATACGT
CAACAAGGGTTTGGAGGATGAACCCCTGCTGCAAGGGAAGTTCCCGACAT
TGGGATTCAAGAAGCAATACGTCAACAAGGGTTTGGAGGATGAACCCCTG
CTGCAAGGGAAGTTCCCGACATTGGGATTCAAGAAGGAAAACCCGAACGA
AACACGCAGCTTCTACCGGAGAGCAGAGCAAGGGATCCGGATACGTGGGA
GCTAGGAAAACCCGAACGAAACACGCAGCTTCTACCGGAGAGCAGAGCAA
GGGATCCGGATACGTGGGAGCTAG back to top
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