mRNA_D-dudresnayi_contig9965.28772.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9965.28772.1
Unique NamemRNA_D-dudresnayi_contig9965.28772.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9965.28772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9965contigD-dudresnayi_contig9965:2158..2795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.9959376-UTR-D-dudresnayi_contig9965:2157..26031622930958.9959376-UTR-D-dudresnayi_contig9965:2157..2603Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9965 2158..2603 +
1690557980.2429228-UTR-D-dudresnayi_contig9965:2157..26031690557980.2429228-UTR-D-dudresnayi_contig9965:2157..2603Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9965 2158..2603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.0168865-CDS-D-dudresnayi_contig9965:2603..27951622930959.0168865-CDS-D-dudresnayi_contig9965:2603..2795Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9965 2604..2795 +
1690557980.2551441-CDS-D-dudresnayi_contig9965:2603..27951690557980.2551441-CDS-D-dudresnayi_contig9965:2603..2795Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9965 2604..2795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9965.28772.1prot_D-dudresnayi_contig9965.28772.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9965 2604..2795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9965.28772.1

>prot_D-dudresnayi_contig9965.28772.1 ID=prot_D-dudresnayi_contig9965.28772.1|Name=mRNA_D-dudresnayi_contig9965.28772.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=64bp
MASFRESHPRESEAPRRRTPTRTESRNPQLRKGLSFDSEAESRHEMYVPT
AYPVAKAVLAAPAA
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mRNA from alignment at D-dudresnayi_contig9965:2158..2795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9965.28772.1 ID=mRNA_D-dudresnayi_contig9965.28772.1|Name=mRNA_D-dudresnayi_contig9965.28772.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=638bp|location=Sequence derived from alignment at D-dudresnayi_contig9965:2158..2795+ (Desmarestia dudresnayi DdudBR16 monoicous)
CATCATTGGAGCCCAAGGCAGTCCCTGGTCGGGCATCACCTTCTAGTCGC
CGTTATACGTGGTGGACACGCTCGCTCTTTTCGTTGTACTAAGCTACCTC
AGGCACAGCCACCGCAAGAGGAGAGGGTGGACAGGAGACAGAAGTGAGAC
ACATTCGTTGAGATTCGTTGAAAAACGTGTTTGTATCGTGTTCGTTTTTT
TTATAGGCGTGACGTTCTTCCTCGGACTTTTCCTCGCATTTTTTCCCGGC
ACCAAACAAACGCCCGAGAAACCACCGAGGAAAGCCAGAACACATCGTCC
TCCGCCCCGCCACAAGCCACTGCTGCCTCAGGCTAGTCGTTGGTTGTCTT
CCAAGCAGGGAGACGCACGCCGTTTGTTCCCTGGCGATATATACATAGAG
CGAGAGAGAGGCTACTTCTATCTATTGGGGCAGCAAAGCAGGTGCTATGG
CGAGCTTTCGTGAAAGCCACCCGAGAGAGTCGGAGGCTCCGAGGCGTAGG
ACCCCCACTCGAACGGAGTCCAGAAATCCGCAACTTCGAAAAGGCCTAAG
CTTTGACTCGGAAGCAGAGTCTCGGCATGAGATGTACGTGCCCACAGCGT
ACCCGGTGGCGAAGGCTGTCCTTGCGGCGCCGGCCGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9965:2158..2795+

>mRNA_D-dudresnayi_contig9965.28772.1 ID=mRNA_D-dudresnayi_contig9965.28772.1|Name=mRNA_D-dudresnayi_contig9965.28772.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at D-dudresnayi_contig9965:2158..2795+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGAGCTTTCGTGAAAGCCACCCGAGAGAGTCGGAGGCTCCGAGGCG
TAGGACCCCCACTCGAACGGAGTCCAGAAATCCGCAACTTCGAAAAGGCC
TAAGCTTTGACTCGGAAGCAGAGTCTCGGCATGAGATGTACGTGCCCACA
GCGTACCCGGTGGCGAAGGCTGTCCTTGCGGCGCCGGCCGCGATGGCGAG
CTTTCGTGAAAGCCACCCGAGAGAGTCGGAGGCTCCGAGGCGTAGGACCC
CCACTCGAACGGAGTCCAGAAATCCGCAACTTCGAAAAGGCCTAAGCTTT
GACTCGGAAGCAGAGTCTCGGCATGAGATGTACGTGCCCACAGCGTACCC
GGTGGCGAAGGCTGTCCTTGCGGCGCCGGCCGCG
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