mRNA_D-dudresnayi_contig9960.28769.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9960.28769.1
Unique NamemRNA_D-dudresnayi_contig9960.28769.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9960.28769.1 vs. uniprot
Match: A0A6H5JAG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG1_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.810e-5
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 2 
Query:    2 LGLSGDEVGKMVHRNPAIVGYSIVHTLRPKLR 97
            LGLS D+VGKM+ +NPAIV  SIVH LRPKLR
Sbjct:  371 LGLSTDDVGKMIRKNPAIVACSIVHNLRPKLR 402
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9960.28769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAG1_9PHAE5.810e-575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9960contigD-dudresnayi_contig9960:3349..6868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9960.28769.1prot_D-dudresnayi_contig9960.28769.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9960 3349..6868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.6278746-CDS-D-dudresnayi_contig9960:3348..35211622930958.6278746-CDS-D-dudresnayi_contig9960:3348..3521Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9960 3349..3521 -
1690557980.1527185-CDS-D-dudresnayi_contig9960:3348..35211690557980.1527185-CDS-D-dudresnayi_contig9960:3348..3521Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9960 3349..3521 -
1622930958.6469223-CDS-D-dudresnayi_contig9960:5476..55821622930958.6469223-CDS-D-dudresnayi_contig9960:5476..5582Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9960 5477..5582 -
1690557980.1606953-CDS-D-dudresnayi_contig9960:5476..55821690557980.1606953-CDS-D-dudresnayi_contig9960:5476..5582Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9960 5477..5582 -
1622930958.6827185-CDS-D-dudresnayi_contig9960:6772..68681622930958.6827185-CDS-D-dudresnayi_contig9960:6772..6868Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9960 6773..6868 -
1690557980.1713402-CDS-D-dudresnayi_contig9960:6772..68681690557980.1713402-CDS-D-dudresnayi_contig9960:6772..6868Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9960 6773..6868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9960.28769.1

>prot_D-dudresnayi_contig9960.28769.1 ID=prot_D-dudresnayi_contig9960.28769.1|Name=mRNA_D-dudresnayi_contig9960.28769.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=125bp
AWPERGRGRKDGSSKSRYRGLQHRPHLEAEIEVAPEGTGAFQAKVHSHHC
EVPHHIRPQHRRQYGPQGGLADDGARIHENRGGEGDFCQPRGAVEQRGLE
PDAEDKLVCGRPPDGAGNGSRYDSQ
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mRNA from alignment at D-dudresnayi_contig9960:3349..6868-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9960.28769.1 ID=mRNA_D-dudresnayi_contig9960.28769.1|Name=mRNA_D-dudresnayi_contig9960.28769.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3520bp|location=Sequence derived from alignment at D-dudresnayi_contig9960:3349..6868- (Desmarestia dudresnayi DdudBR16 monoicous)
GCTTGGCCTGAGCGGGGACGAGGTCGGAAAGATGGTTCATCGAAATCCCG
CTATCGTGGGCTACAGCATCGTCCACACCTTGAGGCCGAAATTGAGGCAA
GCGTTTCCATGTATTACAGTAAATACATAACTGTACATAAGTCAGCACAG
ACTCTTGAGCCTTCATGCATTACAGTAGATACGTAATGAACATAAGTCAG
CACAGACTCTTGAGTACGCGGCTGGATGTAGTAGTTGGGTAGAAAGTGTA
CATAAATCAATCAGGACAGACTCTTGAGTACGCGACTGGATGTCGTATGG
TGGAAAGGATTCTTTGTTTTTGTATGTGAAGACGACATCAATAACAACAT
ACTTTTTTTTTTTTTTTCCGTCCCATTTATTCTCTTCGCCTATTCTTTCT
CAAGCTCCATCTTTCTTAGAAACTCAGATCCGGGGTCACATAGCAGGCAC
TCCTCCAGCCTTCCCACTACGGTACGTGCATGCATTTTTATCGCGAGAAG
ACTGCAGCACTTTATTCCCTCGTCGTCTTTCATCGAATTGTGCGTACTCA
CGCTCTAGCGTTTTCCGCGACGGAAGATGGCACAGAAAAGTGCCACCGGG
GATCGAACCCTCAACTTCCGCCAACAGAGGCGAACACCCTAACCACTAAA
CCATTGGGCCACCCCTATACTATACGAGCATATATTGAGTGAAAATGTGT
GTAAGGAGCTGTGGTGGGTGGGTGCTGTGACGCGTTGTCGCCGAATTTTG
CTTGCAAAACTTGCATGAGGATGGTTTTTGCTATGTTTTTTTCAGTGGAT
GCCTCGGGTGCGACAGAGTCGTTGTGGGCGGGGTGGATATTTTCTGTAGT
TAGTGTTCGCGTTTTTTGCAATGGGATCTGTCCATTGCTGCCGCGATGAG
ACAGGCCTGTGGGATTTCTCGTCTGTGCGGTTGCTTGTGTGTCATGTTGT
TTTGTTTCCTTATCTCTCTTTTGTTTTGTTAAGAATGCCTACAGTACAAT
TCCACCCGAGTGTTTTGTCGACTTTTCGGCCAGTATTTACCTTTTTTTTG
TTGCTGTCAAATGGTATTGCGTTCTGCAATCAATGGCAAAGCGTTACATA
CTAGTGGCAACCGGTGGAACTGGTATCGAAAAGGTGCCTCTTTTTGTGAC
CACGGGTCAGAGCAATCGGGCACAAATAGTGACGCAACACAAGTAAATAA
ATAAATCGTGTTGATTGCCGTTTGTTCGTTTGTTTGTTTGTTTGTTTGTT
TCCCTCCTGCTGTCTTGTTTCCTTCGCTCCACGCAGGTGGCTCCAGAAGG
AACTGGGGCTTTCCAGGCCAAAGTCCATTCGCATCATTGTGAAGTGCCCC
ACCATATTCGGCCTCAGCATCGACGACAATATGGTCCCCAAGGTTAGCAG
GTCTACCTTTGTCTCTCGTAGCCCTAACCCTAACCGTGTGTGCCACGGTG
AGCGTGTCAACGATGATGGCTGTTGCCTACGCCTCTCGGCTTTGCAGCGG
GGTGTTCCATTTTTATGTCCGGCCGGGGCTCACTCTAGCATATCCCGGGT
AGAAACATCCATCCACCAGAAAGAAAGTACTCCAGGGAGGAGGACCGGAT
CGACAGTTTTTTTTTTGGCCGGCCGGTTTCGACTTTTTGTGCTTTTTTAT
CTGCGGCCCAGTGGTTGGTTGAGATGGGCGTTTTCGTTTTGTAAGGGGAG
GGGGGGAGTACTCATTTGCTGCGTGCCTTCATATTTTGACCATTGACCGC
GCATCCCTTTCGAGACGGAGCACCGTTCCTACTCCTAATAGAGACGCCTC
CAACATTTGGGCACTCTTCTACGCTTTTGTTGTTGATATTTTAGTACTTT
TAAAAAACAATGCGTATCTTATCTACTTCCTGTTTGGCCTTTTTGTCGCC
TGTTAAAAAGATACACCTAAACACTTAACTATGCAGTCAGCCACCAACTA
TCTCCTACGATGGAAATCGTTTTCTCGCTATTGTCTGTTATACCAAACTC
TCCATGTCACATTCGTCTGTTTTTTGGTGGCGGGGTGGAGGTTCGTCGCG
CTTCTAGAGCTAACCCCTTAGCTTTCTGGGCAACCTGTGATCTCAAAGGT
TCATGTCCCCCCCCCCCCCCGGTTCATGCCGTGGACTTTTATGGACGCGT
TGGGTGATTCCCGCAGCTCGCGCTTTCCGCGACACAAGACGGCAGCAAGC
AAATGTGTTTTTTACGGGCGTTCAAATTGCCGCACTTGTGTAAACTGGGA
TATTAGTGCCACCAGCTGAACGACGGAGTCGCAGTAGCCGTTGATGAACG
AAGTAATTTGGGTGATTGGTTGATTGAGTGATTGGTTGATTCCTTGATTG
ATTGACCGAGTGATTGATTGGTTCCTTGGTTTGATGGATTGTGATTGCAT
GATTGATTGATTGATTGATTGACTCCTTGTCTCACGTTATATCATTTACC
CGAGCCGACTTAAACCAATTTCACGAATGTCCAAGAAACGAAACACACCA
TGGAAAAAACAAAGAGAACCCAAAAAAGGCAAAATATTTCGGACCCGGAC
TCTAGAAGCACTTGTCATAACAAATGAAACAATCCTGCGGACTCCAACTG
AATTGCCTCAATTCGACCAACACCACATAGAGAAAAAAAATGTTGAAGAG
GGAGGGACAAATGACGGTACCATACAAAAGCTGATATATATATATATATA
TATATATATATTATAGGTGGAATATCAGGCGGCAAGAGATAGGAGTATCG
CATACGTACCCTGGGCAAGGAAGGGTAAGGCCAATCGGCGAACGCATGGA
TGGGGTGTCTGGACCACGCGCTTAGACCGAACCTGGCGCAGCTGCCATCG
TTGTTGAGGTCCCGTCCAATCCCGTCCCGTGGAATACCGTGCTTTCTCGA
TCCCGTCCCAATTGTCCCGTGCAATCCCGTGATGGGTCAATCCCATCCCG
TGAAATGCGTGCATACTGTTGTGTCCCTTCCAGTCCCGTCCCGTCCTGTG
AATCACTGTGTGTGCCATTGTATGTGCGACTTTCCAGTTTGATACATTTC
ATCGGCCCGGCGCGTGCCCCCCCCCCCCCACCCCCTTGCGCCCTGCGTAT
AGCGTCCTGATGGTTTCCACTTGACGGGGGCGTTACACTCTTCCTTGCTA
AGCAACCTCTCCCCACCAGTCCTTCGCGGTTGTATCACACACGCCTGTAT
ACTAATACTTCGTAGGCGTTATTTCTGCGTGAATTGGCTAGGATAGGAAA
CATAACTAAGTATTTATTTTTTTTCTTCCATCGTTTTTTTTGTTTTTTTT
GTTTTGTTGGGGGGAATTGTCTATCGTCGGGACACTGCGCGCGAAAGGTG
GATTGGCTGATGATGGAGCTCGGATTCACGAGAACAGAGGCGGCGAGGGT
GATTTTTGCCAACCCCGGGGTGCTGTTGAGCAGCGTGGACTCGAGCCTGA
TGCCGAAGATAAGCTGGTTTGCGGACGCCCTCCAGATGGAGCAGGAAATG
GTAGTCGATATGATTCGCAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9960:3349..6868-

>mRNA_D-dudresnayi_contig9960.28769.1 ID=mRNA_D-dudresnayi_contig9960.28769.1|Name=mRNA_D-dudresnayi_contig9960.28769.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at D-dudresnayi_contig9960:3349..6868- (Desmarestia dudresnayi DdudBR16 monoicous)
GCTTGGCCTGAGCGGGGACGAGGTCGGAAAGATGGTTCATCGAAATCCCG
CTATCGTGGGCTACAGCATCGTCCACACCTTGAGGCCGAAATTGAGGCTT
GGCCTGAGCGGGGACGAGGTCGGAAAGATGGTTCATCGAAATCCCGCTAT
CGTGGGCTACAGCATCGTCCACACCTTGAGGCCGAAATTGAGGTGGCTCC
AGAAGGAACTGGGGCTTTCCAGGCCAAAGTCCATTCGCATCATTGTGAAG
TGCCCCACCATATTCGGCCTCAGCATCGACGACAATATGGTCCCCAAGGT
GGCTCCAGAAGGAACTGGGGCTTTCCAGGCCAAAGTCCATTCGCATCATT
GTGAAGTGCCCCACCATATTCGGCCTCAGCATCGACGACAATATGGTCCC
CAAGGTGGATTGGCTGATGATGGAGCTCGGATTCACGAGAACAGAGGCGG
CGAGGGTGATTTTTGCCAACCCCGGGGTGCTGTTGAGCAGCGTGGACTCG
AGCCTGATGCCGAAGATAAGCTGGTTTGCGGACGCCCTCCAGATGGAGCA
GGAAATGGTAGTCGATATGATTCGCAGGTGGATTGGCTGATGATGGAGCT
CGGATTCACGAGAACAGAGGCGGCGAGGGTGATTTTTGCCAACCCCGGGG
TGCTGTTGAGCAGCGTGGACTCGAGCCTGATGCCGAAGATAAGCTGGTTT
GCGGACGCCCTCCAGATGGAGCAGGAAATGGTAGTCGATATGATTCGCAG
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