mRNA_D-dudresnayi_contig9959.28766.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9959.28766.1
Unique NamemRNA_D-dudresnayi_contig9959.28766.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9959.28766.1 vs. uniprot
Match: D8LL20_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL20_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 2.100e-60
Identity = 136/242 (56.20%), Postives = 156/242 (64.46%), Query Frame = 1 
Query:  133 MQAVLHSASKHPPPTPSLNAAAA---SATAGAVAPELMAVSGGLDLAILCKNNTICAVNLLHPPDDDANDNSSHSYRTTRGVQPRVDAALLNEVSFAANCTPRPGDDTIPSDSIPAKTAINGLEFSPSGQSLLVWGESYVAVARLPRSSAMATRATASS--------ASMALDVHKGSSSSSARDSGIVMDHPAG---ARWRWTLVDMSGYAVDVMRQRIVQAAWHPASDSCVTLLTVGKDE 816
            MQ VL SAS HPP              ATA  VA ELMAVS GL LA+LC++NTI AV+L+  PD  A+  SS S RT    Q R +    + VSF+A+C PRPGDD IPSDSIP KT I GL+FSPSG SLL+WGESYVAVARLPRS+    R T  S        A+  L   +  ++S  R      D  +G   ARW+WTLVDMSGYAVDVMRQRIV AAWHPASD CVTLLT GKD+
Sbjct:    1 MQLVLRSASLHPPXXXXXXXXXXXXXGATASVVASELMAVSAGLHLAMLCRSNTIRAVSLMDVPDAAAHAPSSGSIRTPSSAQQRREDDPFHAVSFSADCAPRPGDDVIPSDSIPPKTPIKGLQFSPSGHSLLIWGESYVAVARLPRSA----RTTGGSNPTHGVPPATPFLSPPRDLTASGRRRGTAGGDGTSGDKSARWKWTLVDMSGYAVDVMRQRIVHAAWHPASDGCVTLLTAGKDD 238
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9959.28766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL20_ECTSI2.100e-6056.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9959contigD-dudresnayi_contig9959:10018..10845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size830
Cds size744
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.1001723-UTR-D-dudresnayi_contig9959:10017..101011622930958.1001723-UTR-D-dudresnayi_contig9959:10017..10101Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9959 10018..10101 +
1690557979.976183-UTR-D-dudresnayi_contig9959:10017..101011690557979.976183-UTR-D-dudresnayi_contig9959:10017..10101Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9959 10018..10101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.121887-CDS-D-dudresnayi_contig9959:10101..108451622930958.121887-CDS-D-dudresnayi_contig9959:10101..10845Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9959 10102..10845 +
1690557979.9848514-CDS-D-dudresnayi_contig9959:10101..108451690557979.9848514-CDS-D-dudresnayi_contig9959:10101..10845Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9959 10102..10845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9959.28766.1prot_D-dudresnayi_contig9959.28766.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9959 10102..10845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9959.28766.1

>prot_D-dudresnayi_contig9959.28766.1 ID=prot_D-dudresnayi_contig9959.28766.1|Name=mRNA_D-dudresnayi_contig9959.28766.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=248bp
MENTPVARRQTAIGTHMQAVLHSASKHPPPTPSLNAAAASATAGAVAPEL
MAVSGGLDLAILCKNNTICAVNLLHPPDDDANDNSSHSYRTTRGVQPRVD
AALLNEVSFAANCTPRPGDDTIPSDSIPAKTAINGLEFSPSGQSLLVWGE
SYVAVARLPRSSAMATRATASSASMALDVHKGSSSSSARDSGIVMDHPAG
ARWRWTLVDMSGYAVDVMRQRIVQAAWHPASDSCVTLLTVGKDEGVGG
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mRNA from alignment at D-dudresnayi_contig9959:10018..10845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9959.28766.1 ID=mRNA_D-dudresnayi_contig9959.28766.1|Name=mRNA_D-dudresnayi_contig9959.28766.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=828bp|location=Sequence derived from alignment at D-dudresnayi_contig9959:10018..10845+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTTGGCACTTGACACTGACTACAAGAGTACAAGAGTACCGGAGAGAGTCG
AACAAGGAGAGGAGCATACTTAGGAAACGAATAAATGGAGAACACCCCGG
TGGCTCGGCGCCAAACGGCTATCGGTACCCATATGCAAGCTGTGCTTCAC
AGCGCGTCCAAGCACCCTCCGCCCACCCCTAGCCTCAATGCGGCAGCAGC
CAGCGCAACAGCCGGAGCGGTCGCTCCCGAACTCATGGCGGTCAGCGGCG
GTCTCGATCTCGCAATCCTTTGCAAGAACAACACGATATGTGCTGTCAAT
CTTCTCCATCCCCCTGACGACGATGCGAACGACAACAGCAGCCACAGCTA
CAGGACCACGAGAGGGGTACAACCACGGGTAGACGCCGCACTTTTAAACG
AGGTATCCTTCGCGGCGAACTGCACGCCGAGGCCAGGCGACGATACGATC
CCTAGCGACTCCATCCCGGCCAAGACCGCCATCAACGGCCTAGAGTTTTC
GCCGTCGGGACAGAGTCTTCTTGTCTGGGGAGAGAGCTACGTCGCGGTGG
CCCGGCTGCCTCGCTCTTCTGCCATGGCAACCCGCGCTACTGCCTCCAGT
GCCAGCATGGCCTTAGACGTACACAAGGGCAGTAGTAGTAGTAGTGCCAG
GGACAGCGGCATTGTTATGGACCACCCGGCAGGGGCTAGATGGAGATGGA
CGCTGGTCGACATGTCCGGATACGCCGTGGATGTCATGCGGCAGAGGATA
GTGCAGGCTGCCTGGCATCCGGCGAGCGACAGTTGCGTCACACTGCTGAC
AGTCGGCAAGGACGAGGGGGTTGGGGGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9959:10018..10845+

>mRNA_D-dudresnayi_contig9959.28766.1 ID=mRNA_D-dudresnayi_contig9959.28766.1|Name=mRNA_D-dudresnayi_contig9959.28766.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at D-dudresnayi_contig9959:10018..10845+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAGAACACCCCGGTGGCTCGGCGCCAAACGGCTATCGGTACCCATAT
GCAAGCTGTGCTTCACAGCGCGTCCAAGCACCCTCCGCCCACCCCTAGCC
TCAATGCGGCAGCAGCCAGCGCAACAGCCGGAGCGGTCGCTCCCGAACTC
ATGGCGGTCAGCGGCGGTCTCGATCTCGCAATCCTTTGCAAGAACAACAC
GATATGTGCTGTCAATCTTCTCCATCCCCCTGACGACGATGCGAACGACA
ACAGCAGCCACAGCTACAGGACCACGAGAGGGGTACAACCACGGGTAGAC
GCCGCACTTTTAAACGAGGTATCCTTCGCGGCGAACTGCACGCCGAGGCC
AGGCGACGATACGATCCCTAGCGACTCCATCCCGGCCAAGACCGCCATCA
ACGGCCTAGAGTTTTCGCCGTCGGGACAGAGTCTTCTTGTCTGGGGAGAG
AGCTACGTCGCGGTGGCCCGGCTGCCTCGCTCTTCTGCCATGGCAACCCG
CGCTACTGCCTCCAGTGCCAGCATGGCCTTAGACGTACACAAGGGCAGTA
GTAGTAGTAGTGCCAGGGACAGCGGCATTGTTATGGACCACCCGGCAGGG
GCTAGATGGAGATGGACGCTGGTCGACATGTCCGGATACGCCGTGGATGT
CATGCGGCAGAGGATAGTGCAGGCTGCCTGGCATCCGGCGAGCGACAGTT
GCGTCACACTGCTGACAGTCGGCAAGGACGAGGGGGTTGGGGGAATGGAG
AACACCCCGGTGGCTCGGCGCCAAACGGCTATCGGTACCCATATGCAAGC
TGTGCTTCACAGCGCGTCCAAGCACCCTCCGCCCACCCCTAGCCTCAATG
CGGCAGCAGCCAGCGCAACAGCCGGAGCGGTCGCTCCCGAACTCATGGCG
GTCAGCGGCGGTCTCGATCTCGCAATCCTTTGCAAGAACAACACGATATG
TGCTGTCAATCTTCTCCATCCCCCTGACGACGATGCGAACGACAACAGCA
GCCACAGCTACAGGACCACGAGAGGGGTACAACCACGGGTAGACGCCGCA
CTTTTAAACGAGGTATCCTTCGCGGCGAACTGCACGCCGAGGCCAGGCGA
CGATACGATCCCTAGCGACTCCATCCCGGCCAAGACCGCCATCAACGGCC
TAGAGTTTTCGCCGTCGGGACAGAGTCTTCTTGTCTGGGGAGAGAGCTAC
GTCGCGGTGGCCCGGCTGCCTCGCTCTTCTGCCATGGCAACCCGCGCTAC
TGCCTCCAGTGCCAGCATGGCCTTAGACGTACACAAGGGCAGTAGTAGTA
GTAGTGCCAGGGACAGCGGCATTGTTATGGACCACCCGGCAGGGGCTAGA
TGGAGATGGACGCTGGTCGACATGTCCGGATACGCCGTGGATGTCATGCG
GCAGAGGATAGTGCAGGCTGCCTGGCATCCGGCGAGCGACAGTTGCGTCA
CACTGCTGACAGTCGGCAAGGACGAGGGGGTTGGGGGA
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