mRNA_D-dudresnayi_contig9957.28764.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9957.28764.1
Unique NamemRNA_D-dudresnayi_contig9957.28764.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: D7FKX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX6_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 5.020e-34
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    4 DTPVASVKRGEDGDVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAKALCLQKN 234
            D PVASVKRGEDGDVQREYNRQR+HLERNVEALK SIDKDMRMFHQDRSRLNRENV+LTREINDLRR AKAL LQ++
Sbjct: 1070 DNPVASVKRGEDGDVQREYNRQRKHLERNVEALKSSIDKDMRMFHQDRSRLNRENVMLTREINDLRRTAKALSLQQS 1146
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: A0A6H5KNZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.310e-33
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    4 DTPVASVKRGEDGDVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAKALCLQKN 234
            D PVASVKRGEDGDVQREYNR R+HLERNVEALK SIDKDMRMFHQDRSRLNRENV+LTREINDLRR AKAL LQ++
Sbjct:  559 DNPVASVKRGEDGDVQREYNRHRKHLERNVEALKSSIDKDMRMFHQDRSRLNRENVMLTREINDLRRTAKALSLQQS 635
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: A0A7S2BA19_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BA19_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.920e-14
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   31 GEDGD--VQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAKAL 219
            GE G+  VQ EYNRQREHLERNVEALK +I KD+ MF  D SRL RE+V LT E+N LRR+AK L
Sbjct: 1073 GEGGEMEVQHEYNRQREHLERNVEALKQNIGKDIDMFMNDHSRLMRESVSLTEEMNHLRREAKQL 1137
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: A0A7G2CMD7_9TRYP (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2CMD7_9TRYP)

HSP 1 Score: 67.4 bits (163), Expect = 2.560e-11
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   43 DVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAKAL 219
            D  REYNRQR+HLERN+ +LK  ++KD+     DRSR+  ENV+L REINDLR++A+ L
Sbjct:  634 DEVREYNRQRDHLERNLTSLKKKVNKDVENNRSDRSRITAENVILIREINDLRKEARTL 692
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: S9TLX6_9TRYP (Uncharacterized protein n=1 Tax=Strigomonas culicis TaxID=28005 RepID=S9TLX6_9TRYP)

HSP 1 Score: 64.3 bits (155), Expect = 3.480e-11
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   43 DVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAKAL 219
            D  REYNR+R+HLERN+ +LK  ++KD      DR+R+  ENV+L REINDLR++A+ L
Sbjct:   34 DEVREYNRERDHLERNLTSLKKKVNKDAENNRTDRNRITSENVILVREINDLRKEARTL 92
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: A0A7S2WVF7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVF7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.150e-10
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   43 DVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDL 198
            DVQ  YNRQREHLERNVEALK +I KD+ MF  D SRL RE V LT E+N+L
Sbjct:  243 DVQAVYNRQREHLERNVEALKRNIKKDLDMFASDHSRLLREGVGLTEEMNNL 294
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: A0A7S0X964_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X964_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.240e-10
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   37 DGDVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAK 213
            D D+Q+EYNRQRE+LER+VE+LK  + KDM +   D  R+ +ENV L +EIN+LRR+ K
Sbjct: 1043 DEDIQKEYNRQREYLERSVESLKRKLHKDMELHRTDNMRIMQENVSLIKEINELRREVK 1101
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: A0A7R9U231_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U231_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.650e-10
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   43 DVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAKALCLQK 231
            DVQR YN+QRE LERNV+ALK +I KD+ +  +D S+L RE  VLT+E+N LRR++  + +Q+
Sbjct:  513 DVQRVYNKQREFLERNVDALKRNISKDVEVQGRDHSKLMREGAVLTKELNHLRRESNEMLIQR 575
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: A0A7S0QB36_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QB36_9CRYP)

HSP 1 Score: 65.1 bits (157), Expect = 1.660e-10
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   37 DGDVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAKAL 219
            D D+Q+EY RQRE+LE+ V+ALK  +DKD+ + H D  R+ ++NV L +EIN+LRR+ KAL
Sbjct:  639 DTDMQKEYIRQREYLEKTVDALKTKLDKDLALHHTDSLRILQDNVALIKEINELRREIKAL 699
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BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Match: A0A7S2RY67_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RY67_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.290e-10
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   46 VQREYNRQREHLERNVEALKGSIDKDMRMFHQDRSRLNRENVVLTREINDLRRKAKAL 219
            VQREYNRQRE+LE++VE+LK  + KDM+M   D+ RL RE+V LT EIN LRR+  +L
Sbjct:  716 VQREYNRQREYLEKSVESLKRKLTKDMKMHQADKMRLLRESVDLTNEINTLRRELHSL 773
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9957.28764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX6_ECTSI5.020e-3489.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNZ6_9PHAE2.310e-3388.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BA19_9STRA6.920e-1467.69Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7G2CMD7_9TRYP2.560e-1157.63Guanine nucleotide-binding protein subunit beta-li... [more]
S9TLX6_9TRYP3.480e-1154.24Uncharacterized protein n=1 Tax=Strigomonas culici... [more]
A0A7S2WVF7_9STRA1.150e-1069.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0X964_9CHLO1.240e-1055.93Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7R9U231_9STRA1.650e-1053.97Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0QB36_9CRYP1.660e-1054.10Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S2RY67_9STRA2.290e-1060.34Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9957contigD-dudresnayi_contig9957:10062..11011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5e-29
Seed eggNOG ortholog2880.D7FKX6
Preferred nameWDR65
GOsGO:0003008,GO:0007600,GO:0007605,GO:0008150,GO:0032501,GO:0050877,GO:0050954
EggNOG free text desc.WD40 repeats
EggNOG OGs28M22@1,2QTIS@2759
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-01_003510.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size235
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.7717705-CDS-D-dudresnayi_contig9957:10062..101761622930957.7717705-CDS-D-dudresnayi_contig9957:10062..10176Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9957 10063..10176 -
1690557979.860141-CDS-D-dudresnayi_contig9957:10062..101761690557979.860141-CDS-D-dudresnayi_contig9957:10062..10176Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9957 10063..10176 -
1622930957.7900906-CDS-D-dudresnayi_contig9957:10891..110111622930957.7900906-CDS-D-dudresnayi_contig9957:10891..11011Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9957 10892..11011 -
1690557979.8729591-CDS-D-dudresnayi_contig9957:10891..110111690557979.8729591-CDS-D-dudresnayi_contig9957:10891..11011Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9957 10892..11011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9957.28764.1prot_D-dudresnayi_contig9957.28764.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9957 10063..11011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9957.28764.1

>prot_D-dudresnayi_contig9957.28764.1 ID=prot_D-dudresnayi_contig9957.28764.1|Name=mRNA_D-dudresnayi_contig9957.28764.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=78bp
QDTPVASVKRGEDGDVQREYNRQREHLERNVEALKGSIDKDMRMFHQDRS
RLNRENVVLTREINDLRRKAKALCLQKN
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mRNA from alignment at D-dudresnayi_contig9957:10062..11011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9957.28764.1 ID=mRNA_D-dudresnayi_contig9957.28764.1|Name=mRNA_D-dudresnayi_contig9957.28764.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=950bp|location=Sequence derived from alignment at D-dudresnayi_contig9957:10062..11011- (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGATACCCCTGTTGCTTCGGTGAAGAGGGGCGAGGATGGGGATGTGCA
GAGGGAGTACAACCGCCAGAGGGAACACCTCGAGAGAAATGTGGAGGCTC
TAAAGGGAAGCATCGACAAGGTGTGGTATCATACAGCAGGGAATCGTGAC
CGTTGTGTCATGCCTCGCTCCTTTTGATGCCATCATATCATGCCTGCATA
ATGAGACGACGCAATGCCCCGCTATACTGTTGCGCTTCCTAGAAAGCGGA
AAATAGAAAATATGGAGCTGACTAATCGCTGCACGCCTCCGACAGAAGGA
GTGCCACCCCTTCTCTTTGCGATAGTTCTTTGAGACCGAACCGACCCAAG
CCTAACCCTAACCCTAACCCCAACTACCGTGTACCGAAATTATACCGCTA
CGGTGTGGTTGATGACTCAACATCCGCGCCTTCGGCACCGAAATCGAGCT
AAACATGTTTGCTGCGTGCCTGTTGCCTCTTGTATCGAGACAGTTCGGGA
CCAGGTTGGAAATAGTTCACTATTACCATCACCTGCCAAGTCCTTTCGTG
CGTATGCGTCTGATAGCAATACTGCAACGTATCTATAGCTGGCGCGCTTA
TCTTCAATTACAAATACATCAGCAGTGACGTTCCAAACTGGTCCCGGGGC
GCCACGGGATAATCGTCAATCTCACTATGTGATACTTCGGTCGCCTGGAG
TCTATGGCTCCTCAGATATGGTGTTACGCAGTGGCTCCCCTGGGTTGTTC
CAGGCTCTACAGTACAATCTCATTTTATCTTATCTGCTTACTTATACATG
CATTACATGCATACGTACTCTTTTGGGGGTCACAGGACATGCGGATGTTT
CACCAAGACCGGTCGAGGCTTAACCGCGAGAACGTGGTCCTGACCAGGGA
GATAAACGACCTAAGAAGAAAAGCCAAGGCTCTCTGTCTGCAGAAGAACG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9957:10062..11011-

>mRNA_D-dudresnayi_contig9957.28764.1 ID=mRNA_D-dudresnayi_contig9957.28764.1|Name=mRNA_D-dudresnayi_contig9957.28764.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at D-dudresnayi_contig9957:10062..11011- (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGATACCCCTGTTGCTTCGGTGAAGAGGGGCGAGGATGGGGATGTGCA
GAGGGAGTACAACCGCCAGAGGGAACACCTCGAGAGAAATGTGGAGGCTC
TAAAGGGAAGCATCGACAAGCAGGATACCCCTGTTGCTTCGGTGAAGAGG
GGCGAGGATGGGGATGTGCAGAGGGAGTACAACCGCCAGAGGGAACACCT
CGAGAGAAATGTGGAGGCTCTAAAGGGAAGCATCGACAAGGACATGCGGA
TGTTTCACCAAGACCGGTCGAGGCTTAACCGCGAGAACGTGGTCCTGACC
AGGGAGATAAACGACCTAAGAAGAAAAGCCAAGGCTCTCTGTCTGCAGAA
GAACGACATGCGGATGTTTCACCAAGACCGGTCGAGGCTTAACCGCGAGA
ACGTGGTCCTGACCAGGGAGATAAACGACCTAAGAAGAAAAGCCAAGGCT
CTCTGTCTGCAGAAGAAC
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