mRNA_D-dudresnayi_contig9947.28757.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9947.28757.1
Unique NamemRNA_D-dudresnayi_contig9947.28757.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9947.28757.1 vs. uniprot
Match: B5LWN9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN9_9PHYC)

HSP 1 Score: 302 bits (773), Expect = 1.130e-91
Identity = 197/544 (36.21%), Postives = 308/544 (56.62%), Query Frame = 1 
Query:    1 QLEIVRTVNPMVWKVVSRVAAPETVHGIHVDAIDDEELKSFIRQEGSHLEMLGMRKYEGTEL--GTLGAACMGIMDKKKKFRVKGNACGIVSSILKALQVSFRLQRVTNLQSTLFPLTPLNEFVVLCTNVRFGREALEKEKGKNIVKWHGK--SETSWAMRELLERGWKSWIPSIPLGTISPLTREHNL---LATSLNAAYAKTGRWDCVLHVAKEGERVTDEDVYADIDAHFSVVQREIRHAAEVEVNTDGQIGDSRKVKQGRMFRDPWTAAERVENMVTKLTENGITPVMKKVSRRDEILC*RILSDAFDKAGKHEDENHLMTREVDDAARRLQDAGVTCEHISRMTAAICLIDSVSSACVRRQDKNGRKAKDTFVDRDTG--HLVDILPSECKNDASLMAA*GGMMVLHKKNAVLEKAHSVQIILGRAIMR-QNKCHLDDAIGPLDSFGQLLSDSARANLFTRAGKYFLGLPRFGDHIMRTIQISMLATSIVDQEIVDPENNKKVILAVREIKTTMEIAMKFYRAARDSKFTTGTSVLDLG 1602
            +L +V  VNP++W VV  + A  TV  +       EE + F++QEGS L M+GM +Y G E   G      MGI+ KKK   V GNA  +VS++   LQ S+RL R T LQS  FP+ P  EF++L  +V +G++    ++   I  W      E S+A R +        IPS+PL  I  +TR  +L    A+S +  + K GR+  +L  +  G    D +  A +  HF  VQ E R  A VE N    +G +RKVK+GRM  D    A  V +M  +L  NG+TPVM+ V+  +  +C  IL      AG+  +E+H+ T +V   A  L   G+TCE +S MT A+ LI + +S  +RRQ       ++T+V+   G   LVDILP +CK+D +L+ +  GM +LH+K+  +E++++V I+LGRA +R +N   +D+ +GPLD  G+++SD  R +LF RAGK F G+PR G+H+ R+I ++++    V  ++    ++  V   VR ++T+  +A + Y ++++S+F +G +  D+G
Sbjct:   19 KLALVTKVNPLIWAVVRSIPAAMTVGDL---TFLGEEDRLFVQQEGSQLSMMGMSRYAGEEFAFGDDVMVDMGILGKKKMVAVDGNAHAMVSTVSTCLQASYRLGRFTTLQSAFFPVVP-KEFLLL-KSVDWGKKVNPFDEMPTISLWRNACTGELSFAARVVAGLDGGKSIPSLPLMVIGQMTRPDDLGELRASSKDMFFNKMGRFPDLLKSSLSGG---DGEFIAYVYKHFHPVQIESRRRATVERNRQNSVGVNRKVKRGRMLEDVEETARLVTDMAERLVVNGVTPVMRFVTESEIDMCWEILRKERWNAGERVNEDHIYTAQVRHVAASLGARGLTCEAVSVMTGALLLIVAFTSPPLRRQCNKRIMPRNTYVELTPGGEFLVDILPDDCKDDVALLNSEEGMEMLHRKHEFIERSYAVMIVLGRAFLRLKNGGEIDECVGPLDEHGKVISDDRRNHLFKRAGKNFFGIPRLGEHVCRSIGVTLMLEKAVKMDL--SFDSHIVEAMVRGMRTSKAVARRNYNSSKNSRFVSGMTPYDMG 552
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BLAST of mRNA_D-dudresnayi_contig9947.28757.1 vs. uniprot
Match: D7G685_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G685_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.920e-70
Identity = 161/418 (38.52%), Postives = 235/418 (56.22%), Query Frame = 1 
Query:    1 QLEIVRTVNPMVWKVVSRVAAPETVHGIHVDAIDDEELKSFIRQEGSHLEMLGMRKYEGTELGTLGAACMGIMDKKKKFRVKGNACGIVSSILKALQVSFRLQRVTNLQSTLFPLTPLNEFVVLCTNVRFGREALE-KEKGKNIVKWHGKSETSWAMRELLERGWKSWIPSIPLGTISPLTREHNLLATSLNAAYAKTGRWDCVLHVAKEGE--RVTDED-----VYADIDAHFSVVQREIRHAAEVEVNTDGQIGDSRKVKQGRMFRDPWTAAERVENMVTKLTENGITPVMKKVSRRDEILC*RILSDAFDKAGKHEDENHLMTREVDDAARRLQDAGVTCEHISRMTAAICLIDSVSSACVRRQDKNGRKAKDTFVDRD-----TGHLVDILPSECKNDASLMAA*GGMMVLHKK 1215
            +L+ +  + PM+W+V+  ++  ET+  +     D+E L+ F  +EGS LEMLG++++E TE      + MGI   K  FR K  A  ++S++++ L  +FRL R   LQS ++PLT L E   +  NV+FG+EALE + K          +  + A+  LL     +WIP +PL  +  L RE  LL TSL+  Y+KT     VL   +E     V D D     V+  +  +F +V   +R+  E+ VN  GQIG  RK +QGR+  +PWT A  V+ MV  L ++ + P+M+ V   D  LC  +L       G  E+ENHL T E+  AA+RL+D GVTCE IS  +AA+ +IDS +SAC+R+QDK    A +TFV +D        LVDILP +CKN  +L  + GG + LH K
Sbjct:  137 RLDGMTKIRPMIWRVLRVISVQETLRVVP----DEETLEGFTTREGSMLEMLGLKRFEDTEYSFHNGS-MGIFGSKLYFRDKSIATELISTLVQTLLQAFRLNRPVCLQSAVYPLT-LKELEAVAANVKFGKEALEDRAKHSQDTDTEAPTTKTKALEALLAVD-GNWIPDLPLSILRTLNREGELLPTSLDGVYSKTR----VLFKLRERSVYMVPDNDDGDKPVFDKVLTYFRLVANIVRNEKEIYVNNQGQIGPGRKYQQGRLA-NPWTLAPHVDFMVMSLIKDRLKPIMELVGE-DVDLCWEVLKKEGQNPGTRENENHLFTPEIKAAAQRLKDKGVTCEDISLFSAALYIIDSFTSACIRKQDKTEMWAMNTFVRQDLIGIEADRLVDILPYDCKNGYALRKSDGGQIALHAK 541
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BLAST of mRNA_D-dudresnayi_contig9947.28757.1 vs. uniprot
Match: D7FUC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC6_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.960e-13
Identity = 78/273 (28.57%), Postives = 130/273 (47.62%), Query Frame = 1 
Query:  736 QIGDSRKVKQGRM-------FRDPWTAAERVENMVTKLTENGITPVMKKVSRRDEILC*RI---------------LSDAFDKAGKHEDENHLMTRE----VDDAARRLQDAGVTCEHISRMTAAICLIDSVSSACVRRQDKNGRKA----KDTFVD---RDTGHLVDILPSECKNDASLMAA*GGMMVLHKKNAVLEKAHSVQIILGRAIMRQNKCHLDDA-------IGPLDSFGQLLSDSARANLFTRAGKYFLGLPRFGDHIMRTIQIS 1434
            +I D+RKV+ GRM       FR      +R  +MV  +  N + PV   +S  +  +C  +               ++D    A    +E+ LM ++    + +  RRL+   VT E ++  +  + L+D+V +AC+R QD  G  A      TFV      T  +  +LP   K+  +   +  G   +H K   + +  +V ++L R +MR+   HL  +       +GP D+ G+L ++S   +LF  AGK+FLGLPR+G +I RT+  S
Sbjct:  245 RIADNRKVRGGRMKIPGCPIFR------KRTNHMVDVVQHNALEPVTDLISEDEVKMCLDVRRSTDRNTMVDDVLRVNDLDYNAILEIEESRLMPQKYAVAIGEIVRRLK-PDVTAEMVALFSQGLTLVDAVLNACLRCQDLLGMFAFASYMMTFVSPKKAPTEVMEVVLPLTAKDTRASDGSIQGTACVHLKRPDMHRWLAVLLVLLRPLMRE---HLQGSGKQLCLEVGPFDANGKLFTNSKLLDLFQYAGKHFLGLPRWGYNINRTVHTS 507
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9947.28757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B5LWN9_9PHYC1.130e-9136.21Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D7G685_ECTSI1.920e-7038.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUC6_ECTSI1.960e-1328.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9947contigD-dudresnayi_contig9947:6723..8324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_001330.1
Exons1
Model size1602
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9947.28757.1prot_D-dudresnayi_contig9947.28757.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9947 7434..8294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.5424166-UTR-D-dudresnayi_contig9947:6722..74331622930956.5424166-UTR-D-dudresnayi_contig9947:6722..7433Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9947 6723..7433 -
1690557979.3541405-UTR-D-dudresnayi_contig9947:6722..74331690557979.3541405-UTR-D-dudresnayi_contig9947:6722..7433Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9947 6723..7433 -
1622930956.5751-UTR-D-dudresnayi_contig9947:8294..83241622930956.5751-UTR-D-dudresnayi_contig9947:8294..8324Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9947 8295..8324 -
1690557979.3711348-UTR-D-dudresnayi_contig9947:8294..83241690557979.3711348-UTR-D-dudresnayi_contig9947:8294..8324Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9947 8295..8324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.558431-CDS-D-dudresnayi_contig9947:7433..82941622930956.558431-CDS-D-dudresnayi_contig9947:7433..8294Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9947 7434..8294 -
1690557979.3626788-CDS-D-dudresnayi_contig9947:7433..82941690557979.3626788-CDS-D-dudresnayi_contig9947:7433..8294Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9947 7434..8294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9947.28757.1

>prot_D-dudresnayi_contig9947.28757.1 ID=prot_D-dudresnayi_contig9947.28757.1|Name=mRNA_D-dudresnayi_contig9947.28757.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=287bp
MVWKVVSRVAAPETVHGIHVDAIDDEELKSFIRQEGSHLEMLGMRKYEGT
ELGTLGAACMGIMDKKKKFRVKGNACGIVSSILKALQVSFRLQRVTNLQS
TLFPLTPLNEFVVLCTNVRFGREALEKEKGKNIVKWHGKSETSWAMRELL
ERGWKSWIPSIPLGTISPLTREHNLLATSLNAAYAKTGRWDCVLHVAKEG
ERVTDEDVYADIDAHFSVVQREIRHAAEVEVNTDGQIGDSRKVKQGRMFR
DPWTAAERVENMVTKLTENGITPVMKKVSRRDEILC*
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mRNA from alignment at D-dudresnayi_contig9947:6723..8324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9947.28757.1 ID=mRNA_D-dudresnayi_contig9947.28757.1|Name=mRNA_D-dudresnayi_contig9947.28757.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1602bp|location=Sequence derived from alignment at D-dudresnayi_contig9947:6723..8324- (Desmarestia dudresnayi DdudBR16 monoicous)
CAATTGGAGATTGTTCGGACAGTGAACCCTATGGTGTGGAAGGTCGTTTC
CAGAGTCGCTGCCCCTGAAACTGTACACGGTATCCACGTTGACGCGATCG
ATGACGAAGAGCTTAAATCCTTCATCCGGCAGGAAGGGTCCCACCTCGAG
ATGCTTGGAATGCGAAAGTACGAAGGGACAGAGTTAGGGACATTGGGTGC
CGCATGCATGGGCATCATGGACAAGAAAAAAAAATTCCGGGTCAAAGGCA
ATGCTTGCGGAATAGTGTCGTCCATTCTAAAGGCTCTGCAGGTGTCGTTC
AGGCTTCAAAGAGTTACGAACTTGCAGTCGACCTTATTTCCGCTGACCCC
TTTGAATGAGTTCGTGGTCCTATGTACGAATGTGAGGTTTGGGAGGGAGG
CATTGGAGAAGGAGAAAGGGAAGAATATAGTGAAGTGGCATGGGAAGTCG
GAGACGTCGTGGGCAATGCGAGAGCTCTTGGAACGAGGATGGAAGTCATG
GATACCTAGTATCCCTCTAGGAACAATATCTCCCCTAACTCGAGAACACA
ATCTACTCGCGACCAGTCTAAATGCGGCGTATGCGAAGACGGGGCGGTGG
GACTGTGTTTTGCACGTGGCCAAGGAGGGGGAGAGAGTGACGGACGAAGA
TGTATATGCCGATATCGATGCTCATTTTTCAGTCGTTCAACGTGAAATTC
GTCACGCCGCTGAAGTCGAGGTTAATACGGACGGCCAGATCGGGGACAGT
CGCAAGGTCAAACAGGGAAGGATGTTCCGAGATCCCTGGACGGCTGCGGA
GCGTGTGGAGAACATGGTGACGAAATTGACGGAGAACGGCATCACTCCTG
TCATGAAGAAGGTTTCACGACGTGACGAAATATTGTGCTAGAGGATCCTC
TCGGACGCCTTCGACAAAGCCGGCAAACATGAGGACGAAAATCATCTTAT
GACACGCGAAGTCGACGATGCCGCTCGCCGGCTTCAGGATGCGGGAGTAA
CGTGTGAACACATCTCCCGCATGACGGCCGCTATATGCCTAATCGACAGC
GTATCGTCAGCTTGTGTGAGGAGACAGGACAAGAATGGGAGGAAAGCCAA
GGACACCTTCGTGGATAGAGATACTGGTCATTTGGTCGACATTCTTCCGT
CTGAATGCAAGAACGACGCGAGTCTGATGGCGGCATAGGGGGGGATGATG
GTTCTCCACAAGAAAAACGCGGTCCTTGAAAAGGCTCACTCCGTGCAGAT
AATCCTCGGTCGTGCGATCATGCGACAGAACAAGTGTCACCTCGACGACG
CAATAGGTCCCCTCGACTCCTTCGGGCAACTCCTCAGTGACTCTGCCCGC
GCGAATTTGTTTACACGAGCCGGGAAATATTTTCTCGGTCTCCCGAGATT
CGGAGACCACATAATGCGGACCATCCAGATCTCTATGTTGGCGACGAGCA
TCGTAGACCAGGAAATCGTCGACCCCGAGAACAACAAGAAGGTGATATTG
GCAGTGAGAGAGATTAAGACGACGATGGAAATTGCCATGAAATTCTACCG
CGCTGCGAGAGACAGCAAGTTCACTACTGGGACGAGTGTCTTGGACCTCG
GG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9947:6723..8324-

>mRNA_D-dudresnayi_contig9947.28757.1 ID=mRNA_D-dudresnayi_contig9947.28757.1|Name=mRNA_D-dudresnayi_contig9947.28757.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at D-dudresnayi_contig9947:6723..8324- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGTGGAAGGTCGTTTCCAGAGTCGCTGCCCCTGAAACTGTACACGG
TATCCACGTTGACGCGATCGATGACGAAGAGCTTAAATCCTTCATCCGGC
AGGAAGGGTCCCACCTCGAGATGCTTGGAATGCGAAAGTACGAAGGGACA
GAGTTAGGGACATTGGGTGCCGCATGCATGGGCATCATGGACAAGAAAAA
AAAATTCCGGGTCAAAGGCAATGCTTGCGGAATAGTGTCGTCCATTCTAA
AGGCTCTGCAGGTGTCGTTCAGGCTTCAAAGAGTTACGAACTTGCAGTCG
ACCTTATTTCCGCTGACCCCTTTGAATGAGTTCGTGGTCCTATGTACGAA
TGTGAGGTTTGGGAGGGAGGCATTGGAGAAGGAGAAAGGGAAGAATATAG
TGAAGTGGCATGGGAAGTCGGAGACGTCGTGGGCAATGCGAGAGCTCTTG
GAACGAGGATGGAAGTCATGGATACCTAGTATCCCTCTAGGAACAATATC
TCCCCTAACTCGAGAACACAATCTACTCGCGACCAGTCTAAATGCGGCGT
ATGCGAAGACGGGGCGGTGGGACTGTGTTTTGCACGTGGCCAAGGAGGGG
GAGAGAGTGACGGACGAAGATGTATATGCCGATATCGATGCTCATTTTTC
AGTCGTTCAACGTGAAATTCGTCACGCCGCTGAAGTCGAGGTTAATACGG
ACGGCCAGATCGGGGACAGTCGCAAGGTCAAACAGGGAAGGATGTTCCGA
GATCCCTGGACGGCTGCGGAGCGTGTGGAGAACATGGTGACGAAATTGAC
GGAGAACGGCATCACTCCTGTCATGAAGAAGGTTTCACGACGTGACGAAA
TATTGTGCTAGATGGTGTGGAAGGTCGTTTCCAGAGTCGCTGCCCCTGAA
ACTGTACACGGTATCCACGTTGACGCGATCGATGACGAAGAGCTTAAATC
CTTCATCCGGCAGGAAGGGTCCCACCTCGAGATGCTTGGAATGCGAAAGT
ACGAAGGGACAGAGTTAGGGACATTGGGTGCCGCATGCATGGGCATCATG
GACAAGAAAAAAAAATTCCGGGTCAAAGGCAATGCTTGCGGAATAGTGTC
GTCCATTCTAAAGGCTCTGCAGGTGTCGTTCAGGCTTCAAAGAGTTACGA
ACTTGCAGTCGACCTTATTTCCGCTGACCCCTTTGAATGAGTTCGTGGTC
CTATGTACGAATGTGAGGTTTGGGAGGGAGGCATTGGAGAAGGAGAAAGG
GAAGAATATAGTGAAGTGGCATGGGAAGTCGGAGACGTCGTGGGCAATGC
GAGAGCTCTTGGAACGAGGATGGAAGTCATGGATACCTAGTATCCCTCTA
GGAACAATATCTCCCCTAACTCGAGAACACAATCTACTCGCGACCAGTCT
AAATGCGGCGTATGCGAAGACGGGGCGGTGGGACTGTGTTTTGCACGTGG
CCAAGGAGGGGGAGAGAGTGACGGACGAAGATGTATATGCCGATATCGAT
GCTCATTTTTCAGTCGTTCAACGTGAAATTCGTCACGCCGCTGAAGTCGA
GGTTAATACGGACGGCCAGATCGGGGACAGTCGCAAGGTCAAACAGGGAA
GGATGTTCCGAGATCCCTGGACGGCTGCGGAGCGTGTGGAGAACATGGTG
ACGAAATTGACGGAGAACGGCATCACTCCTGTCATGAAGAAGGTTTCACG
ACGTGACGAAATATTGTGCTAG
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