mRNA_D-dudresnayi_contig994.28754.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig994.28754.1
Unique NamemRNA_D-dudresnayi_contig994.28754.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig994.28754.1 vs. uniprot
Match: D8LB37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB37_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 7.260e-72
Identity = 118/150 (78.67%), Postives = 133/150 (88.67%), Query Frame = 3 
Query:    3 IFRSLVASPTAAGQPIVLLLACLRLREGAPTQSFQYQCLTAQGGAEGGRLVGRLEILPCRINNLTMDSSAEYGQLRPSPIGPLGVEGGQQAALEEAFGAVPPPYVSEAEALLDTGIQTMEGLVSQLKAVENDVVRLQVENRCMERMLNNR 452
            +FR +VAS +A+GQ  VLL+ACLRLR+GAPTQSFQYQCLTAQGG  G +  GRLE+LPCRINNLTMDSSAEYG +RPSP+ PLGVEG QQ+ALEEAFG VPPPYVSEAEALLDTGI+TME LVS+LK VEN VVRLQ+ENRCMER+L NR
Sbjct:  124 VFRGMVASSSASGQLPVLLVACLRLRDGAPTQSFQYQCLTAQGGVGGPQGAGRLEVLPCRINNLTMDSSAEYGHVRPSPVVPLGVEGAQQSALEEAFGPVPPPYVSEAEALLDTGIKTMEDLVSELKLVENTVVRLQLENRCMERVLMNR 273
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig994.28754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB37_ECTSI7.260e-7278.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig994contigD-dudresnayi_contig994:28206..30903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionFAM175 family
Ec32 orthologEc-27_005360.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1103
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig994.28754.1prot_D-dudresnayi_contig994.28754.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig994 28839..29713 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.2570019-UTR-D-dudresnayi_contig994:28205..288381622930956.2570019-UTR-D-dudresnayi_contig994:28205..28838Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig994 28206..28838 -
1690557979.2523882-UTR-D-dudresnayi_contig994:28205..288381690557979.2523882-UTR-D-dudresnayi_contig994:28205..28838Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig994 28206..28838 -
1622930956.3103118-UTR-D-dudresnayi_contig994:29713..297501622930956.3103118-UTR-D-dudresnayi_contig994:29713..29750Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig994 29714..29750 -
1690557979.2900789-UTR-D-dudresnayi_contig994:29713..297501690557979.2900789-UTR-D-dudresnayi_contig994:29713..29750Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig994 29714..29750 -
1622930956.3247356-UTR-D-dudresnayi_contig994:30743..309031622930956.3247356-UTR-D-dudresnayi_contig994:30743..30903Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig994 30744..30903 -
1690557979.2992811-UTR-D-dudresnayi_contig994:30743..309031690557979.2992811-UTR-D-dudresnayi_contig994:30743..30903Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig994 30744..30903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.281137-CDS-D-dudresnayi_contig994:28838..289461622930956.281137-CDS-D-dudresnayi_contig994:28838..28946Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig994 28839..28946 -
1690557979.2690136-CDS-D-dudresnayi_contig994:28838..289461690557979.2690136-CDS-D-dudresnayi_contig994:28838..28946Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig994 28839..28946 -
1622930956.2958257-CDS-D-dudresnayi_contig994:29548..297131622930956.2958257-CDS-D-dudresnayi_contig994:29548..29713Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig994 29549..29713 -
1690557979.280813-CDS-D-dudresnayi_contig994:29548..297131690557979.280813-CDS-D-dudresnayi_contig994:29548..29713Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig994 29549..29713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig994.28754.1

>prot_D-dudresnayi_contig994.28754.1 ID=prot_D-dudresnayi_contig994.28754.1|Name=mRNA_D-dudresnayi_contig994.28754.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=91bp
MDSSAEYGQLRPSPIGPLGVEGGQQAALEEAFGAVPPPYVSEAEALLDTG
IQTMEGLVSQLKAVENDVVRLQVENRCMERMLNNRHREGK*
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mRNA from alignment at D-dudresnayi_contig994:28206..30903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig994.28754.1 ID=mRNA_D-dudresnayi_contig994.28754.1|Name=mRNA_D-dudresnayi_contig994.28754.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2698bp|location=Sequence derived from alignment at D-dudresnayi_contig994:28206..30903- (Desmarestia dudresnayi DdudBR16 monoicous)
AGATTTTTCGAAGCCTTGTGGCGTCACCGACAGCGGCTGGACAGCCCATC
GTGTTGCTCCTCGCTTGTCTCAGGCTTAGGGAGGGAGCCCCCACGCAGAG
CTTTCAGTACCAGTGTCTCACGGCGCAGGGTGGCGCGGAGGGTGGACGAC
TTGTGGGACGGTGAGGAACGCGGTCGTCGAGTGTCTCCAGTGTAATTCAC
GGCGGGGAAGGGAAAGTGGCAGTGGTGCGCTGATGTGGCGTCCTATCGTT
TTTTTGCGTAGTCTGTTGTAGAATTGTTTTGTTTTTGCAGCCGAAGCGGC
ATGGTGTAGTACTTGGGTATTTTGTTGTCGAGGACGGTAGAGCAGGGCAG
GGGCTGGCATGTTTGCTGTCACTCGTCATCAAGGACCGGCCACACGCGAG
TTATTTATTTATTATTTTCTAGCCGAAATATCTACTGACACTATTATGTA
GTAGGGAAATGCGCTTGCGTGGTGTGCTGTGTTGTTCGCAGTTTGCATTG
GGGGGCTACAGTGTTAATCGGAATTATAAAGTTGTTGGCGTGTAAAAAAA
TGCGAATCTTGCTATCCCTCCACCCGAACGATGAGGCATTTCTTGGGGAG
GCGTCCAAGCAATCAGGTTTCCAGGTGAAGGCGATGCCGCTATTGTGAGA
TGGAGAGTGGTATATTACCAGGCCGGCCTTGCGATCGATAGGTTATAGAA
GGAAAAATTCTTGAACCACGTTTTGGGATGGAGGAGGGGGGGTCTGGCTA
TCGGCACTTAATCGTTCTTGTGGAAGAAATGCTCCGTCCTCTTGGAAACG
CGTGGTCAAAGATGTAACGGTTTTTAAGTAAGGTATCCAAACACGTGATG
AGTGTGCCTCCCTCACCTTAGTCTGTGATCGTACCTCGCAAAATACGCAC
ACGCAGACGGTACTCAAAATTGGTGTCTCTCGTCACGTGCGAAGTGCGAC
GTAGCGAGATCATCGATCATTTTCTTGTGATGCAGCCTGCGCCAGAGCAA
AAAACAAAAAATTGCGTATCATATCTCTCCGTCCCGACATTGCAGGTGAA
CACGGTGGTTGGTGGTCGATAACTGCAGTGTGACGGATGGCGTGCGTTGT
CGTGACTACGGTATTATACGCCCCCCGTCTGCGGTATGCATGTCCCCATT
CAGGTTGGAGATCCTGCCGTGTCGCATTAATAACCTTACCATGGACTCCT
CTGCGGAGTACGGACAATTGCGACCGTCTCCAATCGGGCCGCTCGGGGTA
GAGGGAGGGCAGCAGGCGGCACTGGAGGAGGCGTTCGGGGCCGTCCCACC
GCCGTATGTTAGTGAGGCCGAGGCGTTATTGGACACGGGGATACAGACTA
TGGAGGTAATTGAAGTATGAAATCCAATCATATACGTCAACCCGGCGCGT
TTTGGTTGGTTTTGTTTTTTATTGGTTTGCACTATTATTTTTGGCCTATG
TAGTATGTGTAGATCACAAGGTACGAAATTGTGGGGGAAACAACTGGAGA
GCAAACGCTAAAGAGTGCTTTGGGATCGGAAATGCTTGCGGTTGCACGTG
ATGTAGGTTTAGCTTAGCTGTTGCGTGGGATAGGCTGGCCCTATAAGAAG
TAAGCACTGTTTTGTGTGTTTATTTCCATCGCGGGTAGCAAGCGGCCGAC
GTCATATGTTGTGATGGCTGACCCGCGAGTTGTTGAATGTTGGAAGAGTA
TGTTCGTCTGCAGCGTCTCTTTTGTTTTCAACTCTTGACCCACGCATGCT
GATTTATGTGGCGGGTTTTGCAAGTTTCACGTGCTTTGGGCACTGCTTCT
GTGCTGTAAACGGTCGAACTACCACTACCCCACCCGCTTGCTTCTACGCT
TACCTTGCCTTGGCTTTCCGCACACAATACCCTGGTGACCTTCCCCCCCG
CGTATCCTTGTTGTGTTGCATTGCCACTCTTGTGTGGTGTTTGATTTGTG
CGCACAGGGTTTGGTTTCGCAGCTCAAGGCGGTGGAAAATGACGTGGTGC
GACTGCAAGTGGAAAATCGTTGCATGGAACGCATGTTGAACAACAGGCAC
CGGGAAGGAAAATAACGAACAACCGATGTGTTTACAGTATATCACACGAG
TACGCAGTTCGTTTGTAACTTTGTTTTTCATCGTTTTTCGTTTTCGTTTT
TGTTGTTGTTGCTGCTTTGTCGGGGGTTTGGAGCCATCGAGACAACACTG
CTTGCGTGCTGGTTTCACTTGATGTATTTTAAAGTGTAAAATTCCCCTGC
TGCCTGCAGTCCCATTGGCGTGCTCGTAGCGTGTTTTGGGTGCAGACTTG
TTGCGCATTCCATAAACAGCGGTGACGTTAGTCCAACATCACTCAGGGTA
CCATGATAAGCTCCGTCAAGCCTAGGACAGGAGATGGTTTTGTCGGGTAT
AGCAGGTCGTACAGGTCCCTACTGCCTGTTTTTATTGTTGGCGTCGCGTT
CCTTTCTGGTGCTAAATTAGCGGTAACAGACTGCTCCGAAAGCCCAGTGT
CAGAAAGCTTCGTGCATGGGAAGTCCCTCCACATGTATGTTCAGATGTAC
GAATTGTCGTGTACGGGGGTCAGTGGACTGTCCTGGAGTAAAGCGCTTCC
AGTATCGACCAATTCAAAAGACAGCACTCTACAAAAGGATGGCGACCGTC
CAATCAGTGGCACGCACGACAAGAGAAGGCTATTTGTCTTATCCTCGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig994:28206..30903-

>mRNA_D-dudresnayi_contig994.28754.1 ID=mRNA_D-dudresnayi_contig994.28754.1|Name=mRNA_D-dudresnayi_contig994.28754.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at D-dudresnayi_contig994:28206..30903- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGACTCCTCTGCGGAGTACGGACAATTGCGACCGTCTCCAATCGGGCC
GCTCGGGGTAGAGGGAGGGCAGCAGGCGGCACTGGAGGAGGCGTTCGGGG
CCGTCCCACCGCCGTATGTTAGTGAGGCCGAGGCGTTATTGGACACGGGG
ATACAGACTATGGAGATGGACTCCTCTGCGGAGTACGGACAATTGCGACC
GTCTCCAATCGGGCCGCTCGGGGTAGAGGGAGGGCAGCAGGCGGCACTGG
AGGAGGCGTTCGGGGCCGTCCCACCGCCGTATGTTAGTGAGGCCGAGGCG
TTATTGGACACGGGGATACAGACTATGGAGGGTTTGGTTTCGCAGCTCAA
GGCGGTGGAAAATGACGTGGTGCGACTGCAAGTGGAAAATCGTTGCATGG
AACGCATGTTGAACAACAGGCACCGGGAAGGAAAATAAGGTTTGGTTTCG
CAGCTCAAGGCGGTGGAAAATGACGTGGTGCGACTGCAAGTGGAAAATCG
TTGCATGGAACGCATGTTGAACAACAGGCACCGGGAAGGAAAATAA
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