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Homology
BLAST of mRNA_D-dudresnayi_contig9929.28743.1 vs. uniprot
Match: D8LQ05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ05_ECTSI) HSP 1 Score: 204 bits (520), Expect = 1.170e-57 Identity = 157/392 (40.05%), Postives = 191/392 (48.72%), Query Frame = 1
Query: 1 QGTAACPSSDTLFMAWALMESKIHNT-RNRKVARALLHRAVALNPQRHSGVVKWRVF---LDLKEA-GEAAVEAVKSAISNGQPVISVSIPPSSDPMFVSSVDTAAGFLANWGNKRSQEEELALAADLLALCNT------------VASRSCGDDDVSTRRHGVAREETFSSRFKELAGELERRGGGVVSGGAGEGGGRELAGSWRLVCTTCSVCERVISRAGGEVYQRLTPPIVEITPK-ACEPSVPFRCDVLLQPSPRARNKAAAANDQSNDQSVKS-------------VTYFLRGWAEAPANRGDKERVLLRQQVAPRSARVGGVGG-----------RRVSMPPPPAVFSALGNVVRGGKRLEKLVTQEVTYVGGQLRIGRTRGGDV 1050
QG CPSSDTL +AWALMESKI N+ +R+ A AL+ RA+ALNP ++ V+ W VF L L EA G +P + AAG + +R EEE LA LL LC++ A+ S RF+ELAGELER+GGG + G R L+G+WRLV TT + C R +SR G EVYQRLTPPI+ I P+ +C+ PFRC+VLL+P+ D S S V YF RGWA+ +E LL+Q VA RSA R S PPPAVFSALG V K LE+L TQEVTYVG QLRIGRT GDV
Sbjct: 126 QGIRDCPSSDTLLVAWALMESKIKNSAHSRRRAWALIRRAIALNPNKNRRVLSWSVFAADLALAEAAGXXXXXXXXXXXXXXXXXXXXXLPEPTAAGGKGIGGAAAGGVRTRALER--EEETILATKLLDLCHSNKGFQEAPEVPPAATXXXXXXXXXXXXXXXXXXXXPSERFQELAGELERKGGGAAA------GVRALSGTWRLVFTTSADCNRYLSRTGNEVYQRLTPPIMAIKPRPSCKQPAPFRCEVLLRPAAATTATGGGTADASYGTRPLSPPSHGTKAAPKATVAYFFRGWADKSPPDQQREGCLLKQHVAARSAXXXXXXXXXXXXXXXSLKRAPSPTPPPAVFSALGLVAARCKGLERLATQEVTYVGKQLRIGRTTEGDV 509
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1112 |
| Cds size | 1050 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9929.28743.1 >prot_D-dudresnayi_contig9929.28743.1 ID=prot_D-dudresnayi_contig9929.28743.1|Name=mRNA_D-dudresnayi_contig9929.28743.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=350bp
MAWALMESKIHNTRNRKVARALLHRAVALNPQRHSGVVKWRVFLDLKEAG
EAAVEAVKSAISNGQPVISVSIPPSSDPMFVSSVDTAAGFLANWGNKRSQ
EEELALAADLLALCNTVASRSCGDDDVSTRRHGVAREETFSSRFKELAGE
LERRGGGVVSGGAGEGGGRELAGSWRLVCTTCSVCERVISRAGGEVYQRL
TPPIVEITPKACEPSVPFRCDVLLQPSPRARNKAAAANDQSNDQSVKSVT
YFLRGWAEAPANRGDKERVLLRQQVAPRSARVGGVGGRRVSMPPPPAVFS
ALGNVVRGGKRLEKLVTQEVTYVGGQLRIGRTRGGDVYVYERCDWPEEM* back to topmRNA from alignment at D-dudresnayi_contig9929:249..2616- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9929.28743.1 ID=mRNA_D-dudresnayi_contig9929.28743.1|Name=mRNA_D-dudresnayi_contig9929.28743.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2368bp|location=Sequence derived from alignment at D-dudresnayi_contig9929:249..2616- (Desmarestia dudresnayi DdudBR16 monoicous)
CAAGGAACAGCCGCATGTCCTAGCTCGGACACTCTCTTCATGGCGTGGGC
CCTCATGGAAAGCAAGATCCACAACACGCGCAACCGGAAGGTTGCCCGCG
CGTTGCTCCACCGGGCAGTCGCTCTGAACCCTCAGCGGCACTCGGGCGTC
GTAAAGTGGCGCGTTTTTCTGGATCTTAAAGAGGCGGGCGAGGCCGCCGT
GGAGGCCGTGAAGTCGGCGATATCCAACGGCCAGCCCGTAATATCCGTCT
CCATTCCACCGTCTTCAGATCCAATGTTCGTATCTTCTGTTGACAGTAGT
CCGACCGCGACAACAACAACGACGGCAACGACCACGACGGCCTGTTCAAG
ACCGACCACTGCTTCGGCGAATGGTTCGCCGAGGGTGGGTAACGAAGTCG
TCGGCCGCAGCAGCAGCAGCAGTAGTGGTAGTAGAATTAGTAGTAGCCGT
AACCGTCGAGCTTCTTCTTCTGTTGCTACCGCTACCCCTGCTTCGCGTCG
TGCAGGAGGAGGCGTCCGCCGTGATCCCGCGGCCGACGGATCTTTGCCGT
CGGTATCTTCGTCGTCGTCGGTAGCGTTTGCGTCGACCCACGCGCCGCCG
GCGGCGGCAGCGGCTGCCGGGTTCCTCGCAAACTGGGGCAACAAGCGGTC
CCAAGAAGAAGAGCTAGCGCTTGCCGCCGATCTTCTCGCGCTCTGCAACA
CCGTCGCAAGTCGTAGCTGTGGTGACGATGATGTTTCTACGCGTCGACAC
GGCGTTGCGCGTGAGGAAACGTTTTCATCGAGGTTCAAGGAACTCGCCGG
GGAGTTGGAGAGGAGAGGTGGCGGGGTTGTGAGCGGGGGCGCGGGGGAGG
GGGGGGGGAGGGAGCTGGCCGGGAGCTGGAGGCTTGTGTGCACGACGTGC
TCGGTGTGCGAACGGGTAATTTCTCGGGCAGGTGTGTGTTCTATCATCGT
TAGATGTAGCGGGGGGGAGGGGGGGTGTATCCGGCTGGTTTACGCGATCA
AGCAAGAAACCACCTTGTGCATATTCAACAGAGGGGAGGGGGGTGTACTT
ATTTCATGCATGACCGCAGTATTTTGACAAGTGAACACGTCTCGAAAGTG
GTGGTGCGGGGTTATCTTTGGTGTTCCATCTTAAGGAAGGCGGAGGACGC
AAGATTGCCCTGTATTATTTGCTATTTTTGTTACTGCGTGCACCCCTCGC
CCACGGTGGCCCGTTCCACCCTGGATATTGAATTGAATTGATATGGTCCT
CGGCTGATTCACAGGAATTGCAATAAATAGCCTTTCATGAACTCACAATT
GTGGTGTATATTGTACATTTGCGTTCAATATTCTACGAATTTTAATACAT
CATTTGTTTGTTCGGTTGAAACGTCAAGAAAGCAATTTGTATTTGCTGCC
TTCGTTTTTTTTTTTTTTAACCTAAAATTGAGTTTCATCCTGGTAAACGT
TGGGACAACAAAGACACAAATCGTTGGCTGCCTTCGTTTTTTGTAGACCT
ATCTTTGATCCTCTGGTGAAATTGGAGCGACTGGGACGACAACGACAAGA
AAGCAATCCTTTGTTTGCCTTTTCGTCTTTTGTAAACCTAGCTTTCACAT
TTTTTTTTTTGTATCCGTCATTTTATAGTACTTCCCAGTCCAGTTCACCA
AGAGCTATTCTACTCATCGCTCTGCGTGCTTGCTGTCTGAGCGAAAGCCG
TGGTCACAGGTGTCTTCCCTTCTTTCTCCCCCCCCCCCGGTAAATAGCCA
ACCAGGGTTCGGCATTCCCGTACGTAGCTCGTCGAATTTCATCGAATTGT
TCATCCTCTGGTAAAAACCATGATGCACTCATGTCTCCCCCCCTCCCCCA
TTTCCACCCGCACCCCCCACAGGCGGAGAGGTGTACCAACGTCTCACCCC
ACCAATCGTAGAAATAACCCCGAAAGCCTGCGAGCCTTCGGTGCCTTTCC
GGTGCGACGTGCTTCTACAGCCATCTCCGCGCGCGCGGAACAAGGCCGCC
GCCGCTAACGACCAGTCTAACGACCAGTCCGTGAAGTCGGTGACGTACTT
TTTGCGTGGCTGGGCGGAAGCTCCCGCGAATCGTGGGGATAAGGAGCGGG
TGCTGCTGCGCCAGCAGGTCGCTCCTCGTAGCGCTAGGGTCGGGGGTGTA
GGGGGACGCCGTGTTTCCATGCCGCCACCTCCTGCCGTGTTTAGCGCCCT
GGGTAACGTTGTTCGGGGGGGTAAGCGGCTTGAGAAGCTGGTGACCCAGG
AGGTTACGTATGTGGGAGGGCAGCTGAGGATAGGCAGGACTAGGGGCGGA
GACGTGTACGTGTACGAGCGGTGTGATTGGCCAGAGGAAATGTAGAATGG
AAGCAAAGAAGGGGCAGG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9929:249..2616- >mRNA_D-dudresnayi_contig9929.28743.1 ID=mRNA_D-dudresnayi_contig9929.28743.1|Name=mRNA_D-dudresnayi_contig9929.28743.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at D-dudresnayi_contig9929:249..2616- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCGTGGGCCCTCATGGAAAGCAAGATCCACAACACGCGCAACCGGAA
GGTTGCCCGCGCGTTGCTCCACCGGGCAGTCGCTCTGAACCCTCAGCGGC
ACTCGGGCGTCGTAAAGTGGCGCGTTTTTCTGGATCTTAAAGAGGCGGGC
GAGGCCGCCGTGGAGGCCGTGAAGTCGGCGATATCCAACGGCCAGCCCGT
AATATCCGTCTCCATTCCACCGTCTTCAGATCCAATGTTCGTATCTTCTG
TTGACAATGGCGTGGGCCCTCATGGAAAGCAAGATCCACAACACGCGCAA
CCGGAAGGTTGCCCGCGCGTTGCTCCACCGGGCAGTCGCTCTGAACCCTC
AGCGGCACTCGGGCGTCGTAAAGTGGCGCGTTTTTCTGGATCTTAAAGAG
GCGGGCGAGGCCGCCGTGGAGGCCGTGAAGTCGGCGATATCCAACGGCCA
GCCCGTAATATCCGTCTCCATTCCACCGTCTTCAGATCCAATGTTCGTAT
CTTCTGTTGACACGGCTGCCGGGTTCCTCGCAAACTGGGGCAACAAGCGG
TCCCAAGAAGAAGAGCTAGCGCTTGCCGCCGATCTTCTCGCGCTCTGCAA
CACCGTCGCAAGTCGTAGCTGTGGTGACGATGATGTTTCTACGCGTCGAC
ACGGCGTTGCGCGTGAGGAAACGTTTTCATCGAGGTTCAAGGAACTCGCC
GGGGAGTTGGAGAGGAGAGGTGGCGGGGTTGTGAGCGGGGGCGCGGGGGA
GGGGGGGGGGAGGGAGCTGGCCGGGAGCTGGAGGCTTGTGTGCACGACGT
GCTCGGTGTGCGAACGGGTAATTTCTCGGGCAGCGGCTGCCGGGTTCCTC
GCAAACTGGGGCAACAAGCGGTCCCAAGAAGAAGAGCTAGCGCTTGCCGC
CGATCTTCTCGCGCTCTGCAACACCGTCGCAAGTCGTAGCTGTGGTGACG
ATGATGTTTCTACGCGTCGACACGGCGTTGCGCGTGAGGAAACGTTTTCA
TCGAGGTTCAAGGAACTCGCCGGGGAGTTGGAGAGGAGAGGTGGCGGGGT
TGTGAGCGGGGGCGCGGGGGAGGGGGGGGGGAGGGAGCTGGCCGGGAGCT
GGAGGCTTGTGTGCACGACGTGCTCGGTGTGCGAACGGGTAATTTCTCGG
GCAGGCGGAGAGGTGTACCAACGTCTCACCCCACCAATCGTAGAAATAAC
CCCGAAAGCCTGCGAGCCTTCGGTGCCTTTCCGGTGCGACGTGCTTCTAC
AGCCATCTCCGCGCGCGCGGAACAAGGCCGCCGCCGCTAACGACCAGTCT
AACGACCAGTCCGTGAAGTCGGTGACGTACTTTTTGCGTGGCTGGGCGGA
AGCTCCCGCGAATCGTGGGGATAAGGAGCGGGTGCTGCTGCGCCAGCAGG
TCGCTCCTCGTAGCGCTAGGGTCGGGGGTGTAGGGGGACGCCGTGTTTCC
ATGCCGCCACCTCCTGCCGTGTTTAGCGCCCTGGGTAACGTTGTTCGGGG
GGGTAAGCGGCTTGAGAAGCTGGTGACCCAGGAGGTTACGTATGTGGGAG
GGCAGCTGAGGATAGGCAGGACTAGGGGCGGAGACGTGTACGTGTACGAG
CGGTGTGATTGGCCAGAGGAAATGTAGGCGGAGAGGTGTACCAACGTCTC
ACCCCACCAATCGTAGAAATAACCCCGAAAGCCTGCGAGCCTTCGGTGCC
TTTCCGGTGCGACGTGCTTCTACAGCCATCTCCGCGCGCGCGGAACAAGG
CCGCCGCCGCTAACGACCAGTCTAACGACCAGTCCGTGAAGTCGGTGACG
TACTTTTTGCGTGGCTGGGCGGAAGCTCCCGCGAATCGTGGGGATAAGGA
GCGGGTGCTGCTGCGCCAGCAGGTCGCTCCTCGTAGCGCTAGGGTCGGGG
GTGTAGGGGGACGCCGTGTTTCCATGCCGCCACCTCCTGCCGTGTTTAGC
GCCCTGGGTAACGTTGTTCGGGGGGGTAAGCGGCTTGAGAAGCTGGTGAC
CCAGGAGGTTACGTATGTGGGAGGGCAGCTGAGGATAGGCAGGACTAGGG
GCGGAGACGTGTACGTGTACGAGCGGTGTGATTGGCCAGAGGAAATGTAG back to top
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