mRNA_D-dudresnayi_contig9927.28741.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9927.28741.1
Unique NamemRNA_D-dudresnayi_contig9927.28741.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9927.28741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9927contigD-dudresnayi_contig9927:1251..2027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-20_001560.1
Hectar predicted targeting categoryother localisation
Exons1
Model size778
Cds size777
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.2575269-CDS-D-dudresnayi_contig9927:1250..20271622930954.2575269-CDS-D-dudresnayi_contig9927:1250..2027Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9927 1251..2027 +
1690557978.3830476-CDS-D-dudresnayi_contig9927:1250..20271690557978.3830476-CDS-D-dudresnayi_contig9927:1250..2027Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9927 1251..2027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9927.28741.1prot_D-dudresnayi_contig9927.28741.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9927 1251..2027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9927.28741.1

>prot_D-dudresnayi_contig9927.28741.1 ID=prot_D-dudresnayi_contig9927.28741.1|Name=mRNA_D-dudresnayi_contig9927.28741.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=259bp
MTQHGSPASPSSMSAHAPGASTHHPQHPHPTLPGPASPVVSTPYGYIDAQ
RLHQQGPYASSPPTSQAWGVPPAVAASIASGEGATSPSFRYPGAGGGGGS
GSISGSGDVEQSAPRVTVSGGMGALQAMFPPVPVFQHPHLQQPRPAQHQH
QPYASGGPGQGHSTSSGSPAPHCSSSVGGPWFPFISTAPFASSATHGVTA
ASRSADLTTTAHSSSGDPVVSSGPKGVTAVNTVAPTPTRSPSEAWAIAAA
SSSLVRQAA
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mRNA from alignment at D-dudresnayi_contig9927:1251..2027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9927.28741.1 ID=mRNA_D-dudresnayi_contig9927.28741.1|Name=mRNA_D-dudresnayi_contig9927.28741.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=777bp|location=Sequence derived from alignment at D-dudresnayi_contig9927:1251..2027+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACACAGCATGGCTCCCCGGCATCGCCAAGCTCCATGTCCGCTCACGC
TCCTGGCGCGTCAACCCATCATCCACAGCACCCCCACCCCACGCTGCCTG
GCCCGGCATCTCCGGTTGTTTCGACTCCCTACGGCTATATCGACGCGCAA
CGGTTACACCAGCAAGGCCCATACGCCTCGTCGCCGCCGACCTCGCAAGC
CTGGGGAGTTCCTCCTGCTGTGGCGGCGAGTATTGCCTCGGGGGAAGGGG
CGACATCGCCGTCGTTTAGGTATCCCGGGGCGGGTGGTGGAGGTGGCAGT
GGTAGCATCAGTGGGAGCGGCGATGTCGAGCAGTCAGCACCGCGGGTGAC
AGTTAGTGGCGGCATGGGCGCATTGCAAGCTATGTTTCCGCCCGTTCCTG
TATTTCAGCACCCCCATCTCCAGCAGCCGAGACCAGCCCAGCACCAGCAC
CAGCCTTATGCGAGTGGTGGACCGGGACAGGGGCACTCGACGTCGTCTGG
ATCTCCCGCGCCGCACTGCAGTTCTTCGGTGGGCGGCCCATGGTTTCCTT
TCATCTCAACGGCGCCGTTTGCGTCTAGCGCCACCCATGGCGTCACTGCA
GCCTCGAGGAGCGCGGATCTTACTACTACTGCGCACTCTTCAAGCGGCGA
CCCAGTTGTTTCCTCTGGTCCTAAGGGCGTTACTGCCGTGAACACCGTGG
CGCCAACTCCTACGAGGTCGCCGAGTGAAGCGTGGGCAATCGCGGCGGCG
TCGTCGTCGTTGGTGAGACAAGCCGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9927:1251..2027+

>mRNA_D-dudresnayi_contig9927.28741.1 ID=mRNA_D-dudresnayi_contig9927.28741.1|Name=mRNA_D-dudresnayi_contig9927.28741.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at D-dudresnayi_contig9927:1251..2027+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACACAGCATGGCTCCCCGGCATCGCCAAGCTCCATGTCCGCTCACGC
TCCTGGCGCGTCAACCCATCATCCACAGCACCCCCACCCCACGCTGCCTG
GCCCGGCATCTCCGGTTGTTTCGACTCCCTACGGCTATATCGACGCGCAA
CGGTTACACCAGCAAGGCCCATACGCCTCGTCGCCGCCGACCTCGCAAGC
CTGGGGAGTTCCTCCTGCTGTGGCGGCGAGTATTGCCTCGGGGGAAGGGG
CGACATCGCCGTCGTTTAGGTATCCCGGGGCGGGTGGTGGAGGTGGCAGT
GGTAGCATCAGTGGGAGCGGCGATGTCGAGCAGTCAGCACCGCGGGTGAC
AGTTAGTGGCGGCATGGGCGCATTGCAAGCTATGTTTCCGCCCGTTCCTG
TATTTCAGCACCCCCATCTCCAGCAGCCGAGACCAGCCCAGCACCAGCAC
CAGCCTTATGCGAGTGGTGGACCGGGACAGGGGCACTCGACGTCGTCTGG
ATCTCCCGCGCCGCACTGCAGTTCTTCGGTGGGCGGCCCATGGTTTCCTT
TCATCTCAACGGCGCCGTTTGCGTCTAGCGCCACCCATGGCGTCACTGCA
GCCTCGAGGAGCGCGGATCTTACTACTACTGCGCACTCTTCAAGCGGCGA
CCCAGTTGTTTCCTCTGGTCCTAAGGGCGTTACTGCCGTGAACACCGTGG
CGCCAACTCCTACGAGGTCGCCGAGTGAAGCGTGGGCAATCGCGGCGGCG
TCGTCGTCGTTGGTGAGACAAGCCGCGATGACACAGCATGGCTCCCCGGC
ATCGCCAAGCTCCATGTCCGCTCACGCTCCTGGCGCGTCAACCCATCATC
CACAGCACCCCCACCCCACGCTGCCTGGCCCGGCATCTCCGGTTGTTTCG
ACTCCCTACGGCTATATCGACGCGCAACGGTTACACCAGCAAGGCCCATA
CGCCTCGTCGCCGCCGACCTCGCAAGCCTGGGGAGTTCCTCCTGCTGTGG
CGGCGAGTATTGCCTCGGGGGAAGGGGCGACATCGCCGTCGTTTAGGTAT
CCCGGGGCGGGTGGTGGAGGTGGCAGTGGTAGCATCAGTGGGAGCGGCGA
TGTCGAGCAGTCAGCACCGCGGGTGACAGTTAGTGGCGGCATGGGCGCAT
TGCAAGCTATGTTTCCGCCCGTTCCTGTATTTCAGCACCCCCATCTCCAG
CAGCCGAGACCAGCCCAGCACCAGCACCAGCCTTATGCGAGTGGTGGACC
GGGACAGGGGCACTCGACGTCGTCTGGATCTCCCGCGCCGCACTGCAGTT
CTTCGGTGGGCGGCCCATGGTTTCCTTTCATCTCAACGGCGCCGTTTGCG
TCTAGCGCCACCCATGGCGTCACTGCAGCCTCGAGGAGCGCGGATCTTAC
TACTACTGCGCACTCTTCAAGCGGCGACCCAGTTGTTTCCTCTGGTCCTA
AGGGCGTTACTGCCGTGAACACCGTGGCGCCAACTCCTACGAGGTCGCCG
AGTGAAGCGTGGGCAATCGCGGCGGCGTCGTCGTCGTTGGTGAGACAAGC
CGCG
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