mRNA_D-dudresnayi_contig9922.28736.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9922.28736.1
Unique NamemRNA_D-dudresnayi_contig9922.28736.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9922.28736.1 vs. uniprot
Match: A0A7S3HLJ5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLJ5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.140e-29
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 IRGGVNSPRSLHREVPAPHEVVGMGNFMPSMAENAEALIDYALSHIPPRDGKRGSRRKKRMERKHESKRKYDAIAKKQQVEAHLRKQADRKRIRQE 288
            IRGG  S RS HREVP   E+  +GN+MP MA+NAEALI++ALSHIP R G RGSR+KKRME K  SKRKYDAI K+Q  EA+LRK A +KRIR E
Sbjct:  105 IRGGALSERSTHREVPTADEIKAVGNYMPRMADNAEALIEFALSHIPERGGYRGSRKKKRMELKFASKRKYDAIKKQQIFEANLRKHAKQKRIRAE 200
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BLAST of mRNA_D-dudresnayi_contig9922.28736.1 vs. uniprot
Match: A0A482SP63_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP63_9ARCH)

HSP 1 Score: 80.1 bits (196), Expect = 1.680e-17
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   28 SLHREVPAPHEVVGMGNFMPSMAENAEALIDYALSHIPPRDGKRGSRRKKRMERKHESKRKYDAIAKKQQVEAHLRK 258
            +L+R+VP P EV G+GNFMP MA+NA+ALID+ALSHIP R G R S+ KKR+  +   +R + A  K+Q+V+A LRK
Sbjct:    8 ALYRDVPRPDEVEGLGNFMPKMADNADALIDWALSHIPQRAGPRRSKHKKRVLARETQRRAHAAQRKQQEVQAKLRK 84
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9922.28736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3HLJ5_9STRA2.140e-2966.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SP63_9ARCH1.680e-1755.84Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9922contigD-dudresnayi_contig9922:8476..9051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size288
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9922.28736.1prot_D-dudresnayi_contig9922.28736.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9922 8476..9051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.7151642-CDS-D-dudresnayi_contig9922:8475..85021622930953.7151642-CDS-D-dudresnayi_contig9922:8475..8502Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 8476..8502 -
1690557978.217273-CDS-D-dudresnayi_contig9922:8475..85021690557978.217273-CDS-D-dudresnayi_contig9922:8475..8502Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 8476..8502 -
1622930953.7330506-CDS-D-dudresnayi_contig9922:8575..86291622930953.7330506-CDS-D-dudresnayi_contig9922:8575..8629Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 8576..8629 -
1690557978.2306726-CDS-D-dudresnayi_contig9922:8575..86291690557978.2306726-CDS-D-dudresnayi_contig9922:8575..8629Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 8576..8629 -
1622930953.7554612-CDS-D-dudresnayi_contig9922:8701..87631622930953.7554612-CDS-D-dudresnayi_contig9922:8701..8763Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 8702..8763 -
1690557978.2412689-CDS-D-dudresnayi_contig9922:8701..87631690557978.2412689-CDS-D-dudresnayi_contig9922:8701..8763Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 8702..8763 -
1622930953.7790394-CDS-D-dudresnayi_contig9922:8827..89441622930953.7790394-CDS-D-dudresnayi_contig9922:8827..8944Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 8828..8944 -
1690557978.251434-CDS-D-dudresnayi_contig9922:8827..89441690557978.251434-CDS-D-dudresnayi_contig9922:8827..8944Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 8828..8944 -
1622930953.8012135-CDS-D-dudresnayi_contig9922:9023..90511622930953.8012135-CDS-D-dudresnayi_contig9922:9023..9051Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 9024..9051 -
1690557978.2661831-CDS-D-dudresnayi_contig9922:9023..90511690557978.2661831-CDS-D-dudresnayi_contig9922:9023..9051Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9922 9024..9051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9922.28736.1

>prot_D-dudresnayi_contig9922.28736.1 ID=prot_D-dudresnayi_contig9922.28736.1|Name=mRNA_D-dudresnayi_contig9922.28736.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=96bp
IRGGVNSPRSLHREVPAPHEVVGMGNFMPSMAENAEALIDYALSHIPPRD
GKRGSRRKKRMERKHESKRKYDAIAKKQQVEAHLRKQADRKRIRQE
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mRNA from alignment at D-dudresnayi_contig9922:8476..9051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9922.28736.1 ID=mRNA_D-dudresnayi_contig9922.28736.1|Name=mRNA_D-dudresnayi_contig9922.28736.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=576bp|location=Sequence derived from alignment at D-dudresnayi_contig9922:8476..9051- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAGAGGAGGAGTTAACTCACCAAGATGTAATATTCTTCTTCTGTAGTA
TATATTATCTATATGTTAATATTTTGTTATTGTTATTATTAACGTTATTT
TTCGCAGCTCTCCACCGTGAGGTTCCTGCGCCCCATGAGGTAGTGGGCAT
GGGAAACTTCATGCCTTCCATGGCAGAGAATGCCGAGGCTCTGATTGACT
ACGCTCTATCTCATATTCCTCCCCGTAAGAATAATTATATTTGTACATTT
AAGCTGAGGTATTCTGACCAGCATTGTAATACGTTTAGGCGATGGCAAGA
GAGGAAGTCGCCGTAAGAAGCGCATGGAGAGAAAGCACGAGTCTAAGAGG
GTATGCACAATGATATATGTTTATATGCTCACAGTAATATTACTTAATTC
CATATTGACTATCACTATATAGAAATACGACGCCATCGCAAAGAAGCAGC
AGGTCGAGGCCCACCTCCGCAAACAGGTACAGTACATACTCACTATTGAG
CTCTGTAGGATCAGTTTCATGATAAAGATATGGCTATTTTCTTCTTTAGG
CGGACAGAAAGCGCATCCGTCAGGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9922:8476..9051-

>mRNA_D-dudresnayi_contig9922.28736.1 ID=mRNA_D-dudresnayi_contig9922.28736.1|Name=mRNA_D-dudresnayi_contig9922.28736.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at D-dudresnayi_contig9922:8476..9051- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAGAGGAGGAGTTAACTCACCAAGATATTAGAGGAGGAGTTAACTCAC
CAAGATCTCTCCACCGTGAGGTTCCTGCGCCCCATGAGGTAGTGGGCATG
GGAAACTTCATGCCTTCCATGGCAGAGAATGCCGAGGCTCTGATTGACTA
CGCTCTATCTCATATTCCTCCCCCTCTCCACCGTGAGGTTCCTGCGCCCC
ATGAGGTAGTGGGCATGGGAAACTTCATGCCTTCCATGGCAGAGAATGCC
GAGGCTCTGATTGACTACGCTCTATCTCATATTCCTCCCCGCGATGGCAA
GAGAGGAAGTCGCCGTAAGAAGCGCATGGAGAGAAAGCACGAGTCTAAGA
GGGCGATGGCAAGAGAGGAAGTCGCCGTAAGAAGCGCATGGAGAGAAAGC
ACGAGTCTAAGAGGAAATACGACGCCATCGCAAAGAAGCAGCAGGTCGAG
GCCCACCTCCGCAAACAGAAATACGACGCCATCGCAAAGAAGCAGCAGGT
CGAGGCCCACCTCCGCAAACAGGCGGACAGAAAGCGCATCCGTCAGGAGG
CGGACAGAAAGCGCATCCGTCAGGAG
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