mRNA_D-dudresnayi_contig9920.28733.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9920.28733.1
Unique NamemRNA_D-dudresnayi_contig9920.28733.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9920.28733.1 vs. uniprot
Match: A0A6H5L887_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L887_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.400e-5
Identity = 57/113 (50.44%), Postives = 65/113 (57.52%), Query Frame = 2 
Query:   65 MTTLASIAD--NSASTSAFPLIGRSGGAFSPILGDPMSDNSNXXXXXXXXXXXXXVGATIVGGGVENVGAGGSDTAAASAHARWNKRELETGG--GQEPRPTKRMSPIPTRPH 391
            MTTLAS  D   +AS    P I R GGAFSP LGDPMSD+  XXXXXXXXXXXXX                G+       + RW KR+LE GG   Q+P P KR SP+P +PH
Sbjct:    1 MTTLASTLDAKKAASPLVSPCIRRLGGAFSPALGDPMSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNGN------VNGRW-KRDLEPGGCEEQQPPPAKRASPVPRKPH 106
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9920.28733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L887_9PHAE1.400e-550.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9920contigD-dudresnayi_contig9920:7420..9581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004060.1
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9920.28733.1prot_D-dudresnayi_contig9920.28733.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9920 7420..7791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.508886-CDS-D-dudresnayi_contig9920:7419..77911622930953.508886-CDS-D-dudresnayi_contig9920:7419..7791Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9920 7420..7791 -
1690557978.1617796-CDS-D-dudresnayi_contig9920:7419..77911690557978.1617796-CDS-D-dudresnayi_contig9920:7419..7791Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9920 7420..7791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.5311713-UTR-D-dudresnayi_contig9920:7791..78171622930953.5311713-UTR-D-dudresnayi_contig9920:7791..7817Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9920 7792..7817 -
1690557978.1773984-UTR-D-dudresnayi_contig9920:7791..78171690557978.1773984-UTR-D-dudresnayi_contig9920:7791..7817Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9920 7792..7817 -
1622930953.5506706-UTR-D-dudresnayi_contig9920:9543..95811622930953.5506706-UTR-D-dudresnayi_contig9920:9543..9581Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9920 9544..9581 -
1690557978.1859038-UTR-D-dudresnayi_contig9920:9543..95811690557978.1859038-UTR-D-dudresnayi_contig9920:9543..9581Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9920 9544..9581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9920.28733.1

>prot_D-dudresnayi_contig9920.28733.1 ID=prot_D-dudresnayi_contig9920.28733.1|Name=mRNA_D-dudresnayi_contig9920.28733.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=124bp
MTTLASIADNSASTSAFPLIGRSGGAFSPILGDPMSDNSNNNSSSSNNSS
SNGVGATIVGGGVENVGAGGSDTAAASAHARWNKRELETGGGQEPRPTKR
MSPIPTRPHQRGSVGKVYHDLDAY
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mRNA from alignment at D-dudresnayi_contig9920:7420..9581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9920.28733.1 ID=mRNA_D-dudresnayi_contig9920.28733.1|Name=mRNA_D-dudresnayi_contig9920.28733.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2162bp|location=Sequence derived from alignment at D-dudresnayi_contig9920:7420..9581- (Desmarestia dudresnayi DdudBR16 monoicous)
GACAGAATAGACGGTGCGAAGCTAGTGTGGAGAGACTGGTGAGACATGAT
CTACTAGCCGTATTAGGCGTGACTTAGTCGTGACACGGGCGTGAGGCGGG
AGGGCGTAATGTACCGTCGTAGACATTTTGTTTTGGCAATTCTCGCTAGA
AATGCTCGGACCTACGCGAGGGCTGAAGGAGGGATTAATTTTCCGGCCGA
AGAGTTGTCCTCCGAGTTCACACGGGGGTTCGTCGTGGTACCGAAAACAA
GAACGAGTGCCTCGATACGGACCTTCCGTCGTCGGTCGTCGAGTTGTGGC
GTTGGCGAGTTGGGCGCTGCGATGTTGAAGGCGGTTTTCGATCAACCGAA
AATAGCGTCTATTTCTTTGTTTTAAGACATCCCTCCTCCCCCCTGTTTTT
TTTTTCAAAGTGCCTAAAAGAAGGACCGATTTGAGAGAGGGTGATGACGC
GTGTATTCCAGTTTTGCCGCCGACACACGAGAAGCGACTCGCGTCTTCGT
GTCCCGACCCTTAAGCGCTCGTGTTGGGGTAGTGCTTAGAGACCATCCAC
AGTAGTAGCAGCTCGTGTTTCCAGTCGTTTCCAGCTTCGACGATGATGTA
ACCGACGCTATCGTTAAAGGTTTTATTTTTCAAAGTGTTTTTTTCTTTGG
TCTCTGTTGCTGAATGCGGCGTATTATATTTTTATTTTTTTGTATTCTAC
CTGCTGTACTCTGTAGTACACACAGTAGTACTGCTACTGACTGTTGTATC
ATACTACTACCTACTGTCTGTACTACTGTCAGAGCTCTACTGAGCCTAAT
ACCATTAATACTACTATCATAATAGTAGTGCACTACGTAGTTATAGTATT
AATAGTCTGAAAGTAGACCCAGGTAGCCGTAGTGACACAACAGTACAGTA
GTAGTACTCGTAGTATGATAGTATTAATAGTATGATAGTACGACAGCGGT
AGTTTGTACAACAGTACAGTACCTGGTACGGTATTTCCAAACATGCTACT
ACTACTGTGTCATAATATTGCCTTGGTCCGTATTGCGGACTTACTTGAGA
GTATACGCTCTAGACTACGCGAGGTCTAGCTCTAGAGCGCTCTCCTAGTC
GTGAAGAAAACAATGACTCCCATGATGTCGGAGATGATACCGACAAGAAT
GGGTAGAATAGGTTCATGCCCTTTGCAGTATGGATTTGATGCCGACAAGC
ATGAGTAGAGCTGGTTCATGCATACTATCATTTACAATACAACATACGGC
AGAAGCGGCCAATACATCTCTGCAGCGCCTTTATTTTTGCTCAGCCTCAC
GTGTCCTGCACTGACTTCTACTAATATACCATACTACTACTACTGTACGG
TATACTTGGTCTGTAATTCGTTCATGCTTTGTATTCACTCGGTGCTGTGA
CATGTTGGTGCAACTTGCTTATGTTCCCCGAGATTTGAATATATCATACA
ACAGACAGTAATATTACATGTACGTAGTCGTAGTACACGCGATGAATGAA
CATCTACTACTACGCTCTGTACTGACAGACTCATGTGGTGGCTTGGTCCT
GCGCAGTTGGTTGGTAGGCTGGTTGGTTGATTGGCCGGCAGTCACGAGGG
ATTAGAAACTAAACAAACGAGCGCGGGCAGTACATGAGCGACTTGTTTTT
GACAGTGTGATACGTACAGTTGTATGTAGTACGCCGGCAACCACAGGTAG
TACGAGCATCTACAACATGTCCGCGGCGTCCTGTTCGGCTGTCGGCGTTT
TTTTTCTATTGCAGGTTGAAAAAAATCGATTGCCACGGGCATGACCACGC
TCGCATCTATCGCAGACAACTCGGCTTCGACGTCAGCGTTCCCCCTTATC
GGCCGCTCGGGCGGCGCCTTCTCGCCCATTCTTGGCGATCCGATGTCGGA
CAACAGCAACAACAACAGCAGCAGCAGCAACAACAGCAGTAGCAACGGTG
TCGGCGCAACGATCGTCGGTGGCGGTGTTGAAAATGTCGGCGCCGGAGGA
TCGGACACCGCCGCTGCGAGCGCTCACGCAAGATGGAACAAAAGAGAGCT
CGAGACGGGAGGCGGTCAAGAGCCGCGGCCGACGAAGCGGATGTCCCCGA
TACCGACCAGACCTCACCAGCGCGGCAGCGTAGGCAAGGTATACCACGAC
CTGGACGCCTAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9920:7420..9581-

>mRNA_D-dudresnayi_contig9920.28733.1 ID=mRNA_D-dudresnayi_contig9920.28733.1|Name=mRNA_D-dudresnayi_contig9920.28733.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at D-dudresnayi_contig9920:7420..9581- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACCACGCTCGCATCTATCGCAGACAACTCGGCTTCGACGTCAGCGTT
CCCCCTTATCGGCCGCTCGGGCGGCGCCTTCTCGCCCATTCTTGGCGATC
CGATGTCGGACAACAGCAACAACAACAGCAGCAGCAGCAACAACAGCAGT
AGCAACGGTGTCGGCGCAACGATCGTCGGTGGCGGTGTTGAAAATGTCGG
CGCCGGAGGATCGGACACCGCCGCTGCGAGCGCTCACGCAAGATGGAACA
AAAGAGAGCTCGAGACGGGAGGCGGTCAAGAGCCGCGGCCGACGAAGCGG
ATGTCCCCGATACCGACCAGACCTCACCAGCGCGGCAGCGTAGGCAAGGT
ATACCACGACCTGGACGCCTACATGACCACGCTCGCATCTATCGCAGACA
ACTCGGCTTCGACGTCAGCGTTCCCCCTTATCGGCCGCTCGGGCGGCGCC
TTCTCGCCCATTCTTGGCGATCCGATGTCGGACAACAGCAACAACAACAG
CAGCAGCAGCAACAACAGCAGTAGCAACGGTGTCGGCGCAACGATCGTCG
GTGGCGGTGTTGAAAATGTCGGCGCCGGAGGATCGGACACCGCCGCTGCG
AGCGCTCACGCAAGATGGAACAAAAGAGAGCTCGAGACGGGAGGCGGTCA
AGAGCCGCGGCCGACGAAGCGGATGTCCCCGATACCGACCAGACCTCACC
AGCGCGGCAGCGTAGGCAAGGTATACCACGACCTGGACGCCTAC
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