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Homology
BLAST of mRNA_D-dudresnayi_contig992.28731.1 vs. uniprot
Match: A0A6H5JCM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM3_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.080e-27 Identity = 69/104 (66.35%), Postives = 78/104 (75.00%), Query Frame = 1
Query: 1 RIGQRAKTVLIQYMVGRGTMDNSMISAIHNKQNTLKSTVGLNRDAGGYTNVPGREHRLRSPGNTPSPQRKKPPA------WRQHQHAGRQQRKLEFSSVNPGTQ 294
RIGQ+AKTVLI+Y+VGRGTMD+ MIS IH KQ TL+STVGLNRDAGGY+NVPGREHRL SPGNTPSP PPA +R+ R QRKLEF+ P Q
Sbjct: 481 RIGQKAKTVLIRYLVGRGTMDDGMISTIHRKQTTLRSTVGLNRDAGGYSNVPGREHRLLSPGNTPSPV--PPPAMPVSMLYRRE----RSQRKLEFAPAAPSEQ 578
BLAST of mRNA_D-dudresnayi_contig992.28731.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.520e-25 Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 1
Query: 1 RIGQRAKTVLIQYMVGRGTMDNSMISAIHNKQNTLKSTVGLNRDAGGYTNVPGREHRLRSPGNTPSP 201
RIGQ+AKTVLI+Y+VGRGTMD+ +IS IH KQ TL+STVGLNRDAGGY+NVPGREHRL SPGNTPSP
Sbjct: 883 RIGQKAKTVLIRYLVGRGTMDDGVISTIHRKQTTLRSTVGLNRDAGGYSNVPGREHRLLSPGNTPSP 949
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 115.5 |
| Seed ortholog evalue | 3.4e-23 |
| Seed eggNOG ortholog | 2880.D8LK86 |
| KEGG ko | ko:K14440 |
| EggNOG free text desc. | annealing helicase activity |
| EggNOG OGs | COG0553@1,KOG1000@2759 |
| EC | 3.6.4.12 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03036 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 731 |
| Cds size | 729 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig992.28731.1 >prot_D-dudresnayi_contig992.28731.1 ID=prot_D-dudresnayi_contig992.28731.1|Name=mRNA_D-dudresnayi_contig992.28731.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=243bp
RIGQRAKTVLIQYMVGRGTMDNSMISAIHNKQNTLKSTVGLNRDAGGYTN
VPGREHRLRSPGNTPSPQRKKPPAWRQHQHAGRQQRKLEFSSVNPGTQHQ
EQHHQQHRAASEVKPEQGMGADITAVTTGGSGTASSPPQRSGLAGWSDPG
NDPRNDPFSSAPAASSPSCVAIAPPATDAASASTTPSPVPAKNGFPCSGN
SVTRVGDRCPTGCNNVGSSSEAIEKADERPVAVGPASGAGLGG back to topmRNA from alignment at D-dudresnayi_contig992:21990..24932+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig992.28731.1 ID=mRNA_D-dudresnayi_contig992.28731.1|Name=mRNA_D-dudresnayi_contig992.28731.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2943bp|location=Sequence derived from alignment at D-dudresnayi_contig992:21990..24932+ (Desmarestia dudresnayi DdudBR16 monoicous)
AGGATCGGGCAGAGGGCGAAGACGGTGCTAATCCAGTACATGGTGGGCAG
GGGTACAATGGACAACAGCATGATTTCCGCCATACACAACAAGCAAAACA
CGCTCAAGTCTACTGTAGGTGCGTCAAATGAGGCAACGAAGAATAGAGAG
GTTAGACTACGTAGAGCTTAACCCAATGCTAACCCGTACATGGTACCATA
AATATACTGGCATCATAAGCAGGGGCAGCAAGTGGGTCAGGTGTTTGGTT
ATCACCCTTGTTGGCGGAAGTTCGGGGTTCGAATCCCGGTGAAAGCAGAA
TGACACTTTTCTGTGCGATGTTCCGTCGCGGAAAGCGCGAGAGCGTCAGT
AAGCGCAAATCGATGAAAAAAGTCGACGAGGGAAGGAAACGCTGCACCAT
TCTCGCGATAAAGTTACAGGCACGCACCGTAGTGGGGAGGGGGGAGGAGG
AGCGCCTGTTAGGTTACCCCGGATCTGAGTTTACAAAGAGAGGTTGAGCT
GGAGAAAGATTAAGGCGAAGCTAAGAAATGGGACGGAGAAAAAACAAAAC
AAAAAAATATGATCTCACGACCCACTAGTATTGAGGTTTCTTTTTTTGTG
AAAAAAAATAGCTTGCTTTTTTGTGAGTAAAAAACAAAAATCTCGCGCTG
ACGAGCTCGATTTTTGACACCTCATCTATTAGGTAGGATATCATACGTCA
TGTAATGATGTCATGATGATGCCATGCTATGCTGTACTATTTTTCATTTT
CTCGTTTTCTCCTCTGTTATGTATGATTGAAGGCTTAAATCGCGACGCGG
GTGGCTACACCAACGTCCCCGGGAGGGAACACCGCCTGCGGAGCCCGGGG
AACACCCCTAGCCCCCAGCGAAAGAAACCGGTGGGTGTATCTTCGTTTTG
CTCCAGATTTCGATTTCAGGCTTATGTGCTACTACTGCTGATTGTATGAT
ACGCACACGCACAATAAGTGGCATGCGGTAAACGTCGTTTTGACGTGTTT
TCCCCGAGCTTGTGTTGCTGTGTTGTACCAGGCATTTTTTTGTGTGTTTT
TGTGTGTTTGTGTGCTTTTCAGGTACAGGGATGACGCTGTGGTCTAGTGG
TTAGGTTTTGTGTCCCCTGTTGGCGGAAGTTCGGGGGTTCGATTCCCAGT
AAATAGTTTAAAACGGTACTTTTTTTTCTGTGCAATGTTGGCAGAAATTC
GGGGTTCGAATCACGGTGAAAAACTGAAAATGACACTTTTTTTTCTGTGT
TACTCTTGAGTCGCGGAAAGCGAGAGAGAGAGACAGACAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGTGGGTTAAGCACAAATCGATGAAAGTGG
ACGAGTTACATGTGAGGGTGTCGAACCCCGTGCGCGATAAAAACTGAGGT
ATGTATCATACCCGTGGGGGGGGGGAGGAGACGCCTACCTGTGAGCACGG
CTTGCTCAAACAGGCGCGCTGAGTGATAAGAGCTCTTCTTATGAGGTTAA
AGTGACGGATATAAAAATGTGGGTAAAGAAGAGTACTCTATCATAGTATC
ATGGCTGCTGTAAATAGTAAATATACTCGTCCGCTTTTCTCCGAGTGCAT
GGGTTGTGTTTTTGTCCTTCCATTCAGAACACCGAGCCTGTATTGTGACC
ACGGAGGAGACCTCTGTGACATGTTTTTTTTTTTTTTTTTATTGTGATGC
AGAAATCATAGTGCGAGACCAAACGACCAAATAGACAATATTGTAGCCTC
GGGAGGGGCCTGGTGTACCGTATCTCGCCAGTAGAGCTTCCGGCTTCTCT
GCTTACCCCTCAAAAATGACATTTAGACATTTTGTTTGGCGTACAAGTAG
CGCACCAAAGAAACCTCGCCCATGGCGAATAATGTCACGAAATCGAAAGA
CACAAAAACCGAAGACCGCAAAGAAGTAGAACAGCCACTCGCGTGAGTGG
CTCTGGTCCGCTGCAAGATCGGCTCGAAATAGTGGGCCCCCTCTACCGTA
ACACGGGTCAGGACGCGATTTTTCCCCCATCGTACCGACTTGCTCCCACG
TGCGAACGCTGTGCTTGGGTACGGGTCGCGGCGAGCGAAGGGGGCATGTG
CGCAAGGGGGAGGGGGTTGTGTTGTCAGCGCGCCCTGTGTCCGTCTCCTT
GTATACGTTGACACCACAAGAAAACGTTGGACCCCAAGGTCGAAGAGTAC
CGTAACGAATAAATGAAATTGTGTCAGCGTCCTCAAGCATGTCTGTCGAG
TTAGTCCTATCGCATCATATTATAGTACTGTTGTACCTTAGTTTATAGCC
GCACATGGAATATCGTAGCACACCACACCACATCACATCACTATTCTGTT
GTCTATTTTTTTCCCTTTCTTTTTTTGTCTCAACGTTTGTTTGTTTTTCG
GTGCTCCTGCTGTTTGATGTATCGTGTAAGCCTGCTTGGAGACAGCACCA
ACATGCTGGCCGACAGCAGCGTAAGCTCGAGTTTTCCTCGGTGAATCCCG
GGACGCAACACCAAGAACAACACCACCAACAACATCGAGCAGCGTCAGAA
GTGAAACCCGAGCAGGGGATGGGAGCGGATATCACAGCAGTTACCACGGG
AGGATCGGGTACAGCATCATCACCGCCTCAGCGGAGCGGGTTGGCGGGCT
GGTCCGATCCGGGAAACGATCCGCGAAACGATCCTTTTTCTTCTGCTCCT
GCTGCTTCTTCACCGTCCTGCGTCGCCATCGCACCCCCAGCAACTGATGC
GGCAAGCGCTTCGACGACACCGTCCCCCGTCCCCGCCAAAAATGGCTTTC
CTTGTTCTGGGAACTCCGTCACTCGCGTCGGCGACAGATGTCCGACGGGC
TGCAACAATGTGGGCTCTTCTTCGGAGGCAATCGAGAAGGCCGACGAACG
ACCGGTCGCTGTTGGGCCCGCTTCGGGAGCGGGATTGGGCGGG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig992:21990..24932+ >mRNA_D-dudresnayi_contig992.28731.1 ID=mRNA_D-dudresnayi_contig992.28731.1|Name=mRNA_D-dudresnayi_contig992.28731.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at D-dudresnayi_contig992:21990..24932+ (Desmarestia dudresnayi DdudBR16 monoicous)
AGGATCGGGCAGAGGGCGAAGACGGTGCTAATCCAGTACATGGTGGGCAG
GGGTACAATGGACAACAGCATGATTTCCGCCATACACAACAAGCAAAACA
CGCTCAAGTCTACTGTAGAGGATCGGGCAGAGGGCGAAGACGGTGCTAAT
CCAGTACATGGTGGGCAGGGGTACAATGGACAACAGCATGATTTCCGCCA
TACACAACAAGCAAAACACGCTCAAGTCTACTGTAGGCTTAAATCGCGAC
GCGGGTGGCTACACCAACGTCCCCGGGAGGGAACACCGCCTGCGGAGCCC
GGGGAACACCCCTAGCCCCCAGCGAAAGAAACCGGCTTAAATCGCGACGC
GGGTGGCTACACCAACGTCCCCGGGAGGGAACACCGCCTGCGGAGCCCGG
GGAACACCCCTAGCCCCCAGCGAAAGAAACCGCCTGCTTGGAGACAGCAC
CAACATGCTGGCCGACAGCAGCGTAAGCTCGAGTTTTCCTCGGTGAATCC
CGGGACGCAACACCAAGAACAACACCACCAACAACATCGAGCAGCGTCAG
AAGTGAAACCCGAGCAGGGGATGGGAGCGGATATCACAGCAGTTACCACG
GGAGGATCGGGTACAGCATCATCACCGCCTCAGCGGAGCGGGTTGGCGGG
CTGGTCCGATCCGGGAAACGATCCGCGAAACGATCCTTTTTCTTCTGCTC
CTGCTGCTTCTTCACCGTCCTGCGTCGCCATCGCACCCCCAGCAACTGAT
GCGGCAAGCGCTTCGACGACACCGTCCCCCGTCCCCGCCAAAAATGGCTT
TCCTTGTTCTGGGAACTCCGTCACTCGCGTCGGCGACAGATGTCCGACGG
GCTGCAACAATGTGGGCTCTTCTTCGGAGGCAATCGAGAAGGCCGACGAA
CGACCGGTCGCTGTTGGGCCCGCTTCGGGAGCGGGATTGGGCGGGCCTGC
TTGGAGACAGCACCAACATGCTGGCCGACAGCAGCGTAAGCTCGAGTTTT
CCTCGGTGAATCCCGGGACGCAACACCAAGAACAACACCACCAACAACAT
CGAGCAGCGTCAGAAGTGAAACCCGAGCAGGGGATGGGAGCGGATATCAC
AGCAGTTACCACGGGAGGATCGGGTACAGCATCATCACCGCCTCAGCGGA
GCGGGTTGGCGGGCTGGTCCGATCCGGGAAACGATCCGCGAAACGATCCT
TTTTCTTCTGCTCCTGCTGCTTCTTCACCGTCCTGCGTCGCCATCGCACC
CCCAGCAACTGATGCGGCAAGCGCTTCGACGACACCGTCCCCCGTCCCCG
CCAAAAATGGCTTTCCTTGTTCTGGGAACTCCGTCACTCGCGTCGGCGAC
AGATGTCCGACGGGCTGCAACAATGTGGGCTCTTCTTCGGAGGCAATCGA
GAAGGCCGACGAACGACCGGTCGCTGTTGGGCCCGCTTCGGGAGCGGGAT
TGGGCGGG back to top
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