mRNA_D-dudresnayi_contig9904.28726.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9904.28726.1
Unique NamemRNA_D-dudresnayi_contig9904.28726.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9904.28726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9904contigD-dudresnayi_contig9904:10349..11016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size668
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.0044565-CDS-D-dudresnayi_contig9904:10348..110141622930952.0044565-CDS-D-dudresnayi_contig9904:10348..11014Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9904 10349..11014 +
1690557977.5462325-CDS-D-dudresnayi_contig9904:10348..110141690557977.5462325-CDS-D-dudresnayi_contig9904:10348..11014Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9904 10349..11014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9904.28726.1prot_D-dudresnayi_contig9904.28726.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9904 10349..11014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9904.28726.1

>prot_D-dudresnayi_contig9904.28726.1 ID=prot_D-dudresnayi_contig9904.28726.1|Name=mRNA_D-dudresnayi_contig9904.28726.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=222bp
KPNNVQFLELNNPTTTASTPTVAVVSEKTPTASSAVEFLDVTNTAKPNVD
VVESATTAPATAATVQFLDVNTATTPATAPTVTNTVEETSPTKDSVQFLD
VKTAAAASPAVAVTDPKPAAVQFMDLKEVPTSSTAAPVAETVTSSSAAPA
AAGNVQFLDLQDSTVKTTRRATADGTVEFLDLKEKEGTSAAAAPEVTTTA
TTAAAPTTTSATGTVQFLDLKE
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mRNA from alignment at D-dudresnayi_contig9904:10349..11016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9904.28726.1 ID=mRNA_D-dudresnayi_contig9904.28726.1|Name=mRNA_D-dudresnayi_contig9904.28726.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=668bp|location=Sequence derived from alignment at D-dudresnayi_contig9904:10349..11016+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAACCAAATAATGTGCAATTTTTGGAACTTAACAACCCAACCACCACAGC
TTCCACCCCGACTGTTGCTGTTGTGTCAGAGAAGACACCCACTGCATCAA
GTGCTGTGGAATTCTTAGATGTTACAAATACCGCGAAACCTAATGTTGAT
GTTGTTGAATCAGCCACTACCGCTCCCGCTACTGCAGCTACTGTACAATT
CCTAGATGTGAATACTGCAACAACACCAGCAACTGCACCGACTGTCACCA
ACACTGTGGAAGAAACATCGCCAACTAAAGATTCCGTTCAGTTCTTGGAT
GTGAAGACCGCAGCAGCTGCTTCACCTGCTGTTGCTGTCACTGATCCTAA
GCCTGCTGCAGTACAGTTTATGGACTTGAAAGAAGTTCCCACATCCTCCA
CTGCAGCGCCTGTTGCAGAAACAGTAACATCCTCCTCAGCAGCACCCGCA
GCTGCAGGCAACGTCCAGTTCTTAGATCTACAGGATTCCACTGTGAAGAC
TACCCGCCGTGCTACTGCGGATGGTACTGTTGAGTTCCTGGATCTGAAGG
AGAAAGAGGGAACCAGTGCTGCCGCTGCCCCTGAGGTGACCACCACTGCC
ACTACTGCTGCTGCTCCCACTACCACATCTGCTACTGGCACTGTGCAGTT
CCTGGACCTGAAGGAGAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9904:10349..11016+

>mRNA_D-dudresnayi_contig9904.28726.1 ID=mRNA_D-dudresnayi_contig9904.28726.1|Name=mRNA_D-dudresnayi_contig9904.28726.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at D-dudresnayi_contig9904:10349..11016+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAACCAAATAATGTGCAATTTTTGGAACTTAACAACCCAACCACCACAGC
TTCCACCCCGACTGTTGCTGTTGTGTCAGAGAAGACACCCACTGCATCAA
GTGCTGTGGAATTCTTAGATGTTACAAATACCGCGAAACCTAATGTTGAT
GTTGTTGAATCAGCCACTACCGCTCCCGCTACTGCAGCTACTGTACAATT
CCTAGATGTGAATACTGCAACAACACCAGCAACTGCACCGACTGTCACCA
ACACTGTGGAAGAAACATCGCCAACTAAAGATTCCGTTCAGTTCTTGGAT
GTGAAGACCGCAGCAGCTGCTTCACCTGCTGTTGCTGTCACTGATCCTAA
GCCTGCTGCAGTACAGTTTATGGACTTGAAAGAAGTTCCCACATCCTCCA
CTGCAGCGCCTGTTGCAGAAACAGTAACATCCTCCTCAGCAGCACCCGCA
GCTGCAGGCAACGTCCAGTTCTTAGATCTACAGGATTCCACTGTGAAGAC
TACCCGCCGTGCTACTGCGGATGGTACTGTTGAGTTCCTGGATCTGAAGG
AGAAAGAGGGAACCAGTGCTGCCGCTGCCCCTGAGGTGACCACCACTGCC
ACTACTGCTGCTGCTCCCACTACCACATCTGCTACTGGCACTGTGCAGTT
CCTGGACCTGAAGGAGAAACCAAATAATGTGCAATTTTTGGAACTTAACA
ACCCAACCACCACAGCTTCCACCCCGACTGTTGCTGTTGTGTCAGAGAAG
ACACCCACTGCATCAAGTGCTGTGGAATTCTTAGATGTTACAAATACCGC
GAAACCTAATGTTGATGTTGTTGAATCAGCCACTACCGCTCCCGCTACTG
CAGCTACTGTACAATTCCTAGATGTGAATACTGCAACAACACCAGCAACT
GCACCGACTGTCACCAACACTGTGGAAGAAACATCGCCAACTAAAGATTC
CGTTCAGTTCTTGGATGTGAAGACCGCAGCAGCTGCTTCACCTGCTGTTG
CTGTCACTGATCCTAAGCCTGCTGCAGTACAGTTTATGGACTTGAAAGAA
GTTCCCACATCCTCCACTGCAGCGCCTGTTGCAGAAACAGTAACATCCTC
CTCAGCAGCACCCGCAGCTGCAGGCAACGTCCAGTTCTTAGATCTACAGG
ATTCCACTGTGAAGACTACCCGCCGTGCTACTGCGGATGGTACTGTTGAG
TTCCTGGATCTGAAGGAGAAAGAGGGAACCAGTGCTGCCGCTGCCCCTGA
GGTGACCACCACTGCCACTACTGCTGCTGCTCCCACTACCACATCTGCTA
CTGGCACTGTGCAGTTCCTGGACCTGAAGGAG
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