mRNA_D-dudresnayi_contig9902.28721.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9902.28721.1
Unique NamemRNA_D-dudresnayi_contig9902.28721.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A482SF61_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF61_9ARCH)

HSP 1 Score: 90.1 bits (222), Expect = 1.360e-21
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMSDSALQVS 204
            CG  VE L VE+   N RLTRCS CG+VADKY+E ELLLVLLD  LHRKPA RHL++NR       VS
Sbjct:   11 CGLTVENLLVEYGEKNFRLTRCSHCGQVADKYIECELLLVLLDVFLHRKPAFRHLMFNRYHPVVAHVS 78          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A6A7G8X0_9CRUS (Protein ARV n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G8X0_9CRUS)

HSP 1 Score: 87.4 bits (215), Expect = 6.620e-19
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMS--DSALQVSLLLLL-YFLCLHYIYIKTFQCVKHRNQS 285
            CG AV  +Y ++   N+RLTRC  C + ADKY+EYE +LVLLD +LHR    RHLL+NR+   +S + V+LL L+  F+C    Y+K F+  K+ ++S
Sbjct:    6 CGSAVNHVYRDYGKGNVRLTRCQICHEYADKYIEYEFMLVLLDLILHRHQVYRHLLFNRIDYHESGVDVTLLKLIPAFICFD-AYLKWFRLAKYYDES 102          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A022QUF1_ERYGU (Protein ARV n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QUF1_ERYGU)

HSP 1 Score: 79.3 bits (194), Expect = 2.930e-17
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMSDS 189
            CG  ++TLY+++SP NIRL RC KC  VAD+Y+E EL+++++D +LH+  A RHL YN  S  
Sbjct:   10 CGFPIKTLYIQYSPGNIRLMRCGKCKAVADEYIECELMILVIDLILHKPKAFRHLFYNMFSKE 72          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A2P5WGF2_GOSBA (Protein ARV n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5WGF2_GOSBA)

HSP 1 Score: 80.9 bits (198), Expect = 3.460e-17
Identity = 40/107 (37.38%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMSDSALQVSLLLLLY-----FLCLHYIYIKTFQCVKHRNQSVGFLWEA 306
            CG  ++TL+V++SP NIRL +C  C  VAD+Y+E EL++VL+D +LH+  A RH+L+N ++       +L+ ++     FLC     I++   +K   Q  G LW++
Sbjct:    8 CGFRIKTLFVQYSPGNIRLMKCVNCKAVADEYIECELMIVLIDLILHKPKAYRHVLFNVLNHERTHFQMLMDVFLGNYMFLCSFLFAIRSL--LKTSAQFSGLLWKS 112          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A7N0U589_KALFE (Protein ARV n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U589_KALFE)

HSP 1 Score: 79.7 bits (195), Expect = 6.470e-17
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMSDSALQV 201
            CG  V  L+V++SP NIRL +C KC +VAD+Y+E E+++VL+D +LH+  A RHLLYN ++  +L +
Sbjct:    8 CGSQVAKLFVQYSPGNIRLMKCPKCKQVADEYIECEIMIVLIDLILHKTKAYRHLLYNVLNQRSLDL 74          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A0V0GNM9_SOLCH (Protein ARV n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GNM9_SOLCH)

HSP 1 Score: 78.6 bits (192), Expect = 8.750e-17
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMSDSALQVSLLL 213
            CG +V TLY+++SP NIRL +C  C  VAD+Y+E EL+++++D +LH+  A RHL YNR     L   +LL
Sbjct:   20 CGFSVTTLYIQYSPGNIRLMKCGNCKAVADEYIECELMILVIDLILHKIKAYRHLFYNRFERETLHNEVLL 90          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A1Q3C9U6_CEPFO (Protein ARV (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3C9U6_CEPFO)

HSP 1 Score: 79.7 bits (195), Expect = 1.050e-16
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMSDSALQVSLLLLLYFLCLHYIYI 249
            C  AV+TL+V++SP NI L +C  C  +AD+Y+E E +++L+D +LH+  A RHLLYN +    L V + ++ Y+L L +I I
Sbjct:    9 CRFAVKTLFVQYSPGNIHLIKCENCKSIADEYIECEFMILLIDLILHKPKAYRHLLYNVLHQDTLNVEVNIVFYYLILLWILI 91          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A2C9VSF3_MANES (Protein ARV n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VSF3_MANES)

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-16
Identity = 32/71 (45.07%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMSDSALQVSLLL 213
            CG  ++TL+V++SP NIRL +C  C  +AD+Y+E EL+++L+D +LH+  A RHLLYN ++   +++  LL
Sbjct:    8 CGFGIKTLFVQYSPGNIRLMKCENCKAIADEYIECELMIILIDLILHKPKAYRHLLYNVLNQQTVELEGLL 78          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A022R568_ERYGU (Protein ARV n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R568_ERYGU)

HSP 1 Score: 80.1 bits (196), Expect = 1.700e-16
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMSDSALQVSLLL 213
            CG  ++TLY+++SP NIRL RC KC  VAD+Y+E EL+++++D +LH+  A RHL YN  S   +    LL
Sbjct:   21 CGFPIKTLYIQYSPGNIRLMRCGKCKAVADEYIECELMILVIDLILHKPKAFRHLFYNMFSKETVNFESLL 91          
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Match: A0A1D6L6R5_MAIZE (Protein ARV n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6L6R5_MAIZE)

HSP 1 Score: 77.8 bits (190), Expect = 1.760e-16
Identity = 32/61 (52.46%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKPAVRHLLYNRMS 183
            CG  V+TL+V++SP NIRL +C KC  VAD Y+E E +++L+D VLH+  A RH+L+N++S
Sbjct:   16 CGGRVKTLFVQYSPGNIRLMKCDKCKAVADPYIECEFMIILIDLVLHKTRAYRHVLFNKLS 76          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9902.28721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SF61_9ARCH1.360e-2163.24Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6A7G8X0_9CRUS6.620e-1945.92Protein ARV n=1 Tax=Hirondellea gigas TaxID=151845... [more]
A0A022QUF1_ERYGU2.930e-1750.79Protein ARV n=2 Tax=Erythranthe guttata TaxID=4155... [more]
A0A2P5WGF2_GOSBA3.460e-1737.38Protein ARV n=1 Tax=Gossypium barbadense TaxID=363... [more]
A0A7N0U589_KALFE6.470e-1749.25Protein ARV n=1 Tax=Kalanchoe fedtschenkoi TaxID=6... [more]
A0A0V0GNM9_SOLCH8.750e-1747.89Protein ARV n=1 Tax=Solanum chacoense TaxID=4108 R... [more]
A0A1Q3C9U6_CEPFO1.050e-1643.37Protein ARV (Fragment) n=1 Tax=Cephalotus follicul... [more]
A0A2C9VSF3_MANES1.700e-1645.07Protein ARV n=2 Tax=Manihot esculenta TaxID=3983 R... [more]
A0A022R568_ERYGU1.700e-1647.89Protein ARV n=1 Tax=Erythranthe guttata TaxID=4155... [more]
A0A1D6L6R5_MAIZE1.760e-1652.46Protein ARV n=1 Tax=Zea mays TaxID=4577 RepID=A0A1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9902contigD-dudresnayi_contig9902:3600..3908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.3
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog3702.AT4G01510.1
KEGG koko:K21848
KEGG TC9.A.19.1
EggNOG free text desc.Protein arv1 homolog
EggNOG OGs37U74@33090,3GCCS@35493,COG5254@1,KOG3134@2759
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.6904492-CDS-D-dudresnayi_contig9902:3599..39081622930951.6904492-CDS-D-dudresnayi_contig9902:3599..3908Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9902 3600..3908 -
1690557977.4307137-CDS-D-dudresnayi_contig9902:3599..39081690557977.4307137-CDS-D-dudresnayi_contig9902:3599..3908Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9902 3600..3908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9902.28721.1prot_D-dudresnayi_contig9902.28721.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9902 3600..3908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9902.28721.1

>prot_D-dudresnayi_contig9902.28721.1 ID=prot_D-dudresnayi_contig9902.28721.1|Name=mRNA_D-dudresnayi_contig9902.28721.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=103bp
CGEAVETLYVEFSPTNIRLTRCSKCGKVADKYVEYELLLVLLDTVLHRKP
AVRHLLYNRMSDSALQVSLLLLLYFLCLHYIYIKTFQCVKHRNQSVGFLW
EA*
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mRNA from alignment at D-dudresnayi_contig9902:3600..3908-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9902.28721.1 ID=mRNA_D-dudresnayi_contig9902.28721.1|Name=mRNA_D-dudresnayi_contig9902.28721.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at D-dudresnayi_contig9902:3600..3908- (Desmarestia dudresnayi DdudBR16 monoicous)
TGTGGAGAGGCAGTTGAGACATTATACGTCGAATTCAGTCCCACTAATAT AAGACTGACTAGATGCTCTAAATGCGGAAAAGTTGCTGATAAATATGTTG AATATGAGCTTTTATTGGTTCTTTTAGACACAGTTCTTCATCGCAAACCA GCGGTGCGACATCTTCTCTACAACCGCATGAGTGACAGCGCTCTACAGGT CAGTTTGTTGTTGCTGCTATACTTTCTATGTCTACACTACATTTACATTA AAACTTTTCAATGTGTGAAACATAGAAATCAATCCGTTGGATTCCTTTGG GAAGCTTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9902:3600..3908-

>mRNA_D-dudresnayi_contig9902.28721.1 ID=mRNA_D-dudresnayi_contig9902.28721.1|Name=mRNA_D-dudresnayi_contig9902.28721.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at D-dudresnayi_contig9902:3600..3908- (Desmarestia dudresnayi DdudBR16 monoicous)
TGTGGAGAGGCAGTTGAGACATTATACGTCGAATTCAGTCCCACTAATAT
AAGACTGACTAGATGCTCTAAATGCGGAAAAGTTGCTGATAAATATGTTG
AATATGAGCTTTTATTGGTTCTTTTAGACACAGTTCTTCATCGCAAACCA
GCGGTGCGACATCTTCTCTACAACCGCATGAGTGACAGCGCTCTACAGGT
CAGTTTGTTGTTGCTGCTATACTTTCTATGTCTACACTACATTTACATTA
AAACTTTTCAATGTGTGAAACATAGAAATCAATCCGTTGGATTCCTTTGG
GAAGCTTAGTGTGGAGAGGCAGTTGAGACATTATACGTCGAATTCAGTCC
CACTAATATAAGACTGACTAGATGCTCTAAATGCGGAAAAGTTGCTGATA
AATATGTTGAATATGAGCTTTTATTGGTTCTTTTAGACACAGTTCTTCAT
CGCAAACCAGCGGTGCGACATCTTCTCTACAACCGCATGAGTGACAGCGC
TCTACAGGTCAGTTTGTTGTTGCTGCTATACTTTCTATGTCTACACTACA
TTTACATTAAAACTTTTCAATGTGTGAAACATAGAAATCAATCCGTTGGA
TTCCTTTGGGAAGCTTAG
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