mRNA_D-dudresnayi_contig9900.28717.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9900.28717.1
Unique NamemRNA_D-dudresnayi_contig9900.28717.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9900.28717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9900contigD-dudresnayi_contig9900:5104..5610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9900.28717.1prot_D-dudresnayi_contig9900.28717.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9900 5188..5589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.278162-UTR-D-dudresnayi_contig9900:5103..51871622930951.278162-UTR-D-dudresnayi_contig9900:5103..5187Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9900 5104..5187 +
1690557977.3084097-UTR-D-dudresnayi_contig9900:5103..51871690557977.3084097-UTR-D-dudresnayi_contig9900:5103..5187Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9900 5104..5187 +
1622930951.386303-UTR-D-dudresnayi_contig9900:5589..56101622930951.386303-UTR-D-dudresnayi_contig9900:5589..5610Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9900 5590..5610 +
1690557977.3397706-UTR-D-dudresnayi_contig9900:5589..56101690557977.3397706-UTR-D-dudresnayi_contig9900:5589..5610Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9900 5590..5610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.3177192-CDS-D-dudresnayi_contig9900:5187..54421622930951.3177192-CDS-D-dudresnayi_contig9900:5187..5442Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9900 5188..5442 +
1690557977.3186564-CDS-D-dudresnayi_contig9900:5187..54421690557977.3186564-CDS-D-dudresnayi_contig9900:5187..5442Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9900 5188..5442 +
1622930951.3731384-CDS-D-dudresnayi_contig9900:5520..55891622930951.3731384-CDS-D-dudresnayi_contig9900:5520..5589Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9900 5521..5589 +
1690557977.3287663-CDS-D-dudresnayi_contig9900:5520..55891690557977.3287663-CDS-D-dudresnayi_contig9900:5520..5589Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9900 5521..5589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9900.28717.1

>prot_D-dudresnayi_contig9900.28717.1 ID=prot_D-dudresnayi_contig9900.28717.1|Name=mRNA_D-dudresnayi_contig9900.28717.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=108bp
MAGNAVPRPASVTGDSLGTQLVYGLSKMSLSSSPFPETSNNNAQLTTAPT
QSYHHNNTSTGTREGYSPSNRTSSSGGGGSSYTGAGLSGELLGKINEYKN
FNTTFTK*
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mRNA from alignment at D-dudresnayi_contig9900:5104..5610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9900.28717.1 ID=mRNA_D-dudresnayi_contig9900.28717.1|Name=mRNA_D-dudresnayi_contig9900.28717.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at D-dudresnayi_contig9900:5104..5610+ (Desmarestia dudresnayi DdudBR16 monoicous)
AAGGACCGCCACAGCGACGGCACCGACCCTGACCTCGAGCACTGCCTGGA
CGTGGAGCTTCCCTTTGCCTGGGCTGAGTCCGACATGGCCGGCAATGCAG
TACCGCGCCCAGCATCCGTCACCGGGGACTCGCTGGGGACACAGCTGGTG
TATGGACTGAGTAAGATGTCCCTCAGCAGCTCTCCATTCCCTGAAACATC
GAATAATAATGCTCAGTTAACAACAGCTCCAACACAATCTTATCATCATA
ATAATACTAGTACTGGTACTAGAGAGGGTTATTCTCCTAGCAATCGTACT
TCCTCATCAGGTGGTGGTGGTAGTAGTTATACTGGTGCGGTGAGTAAAAC
CCTGATGTTTTTACACTTATCTATACATTTATACTAATATTCCCTTGGTT
TTTACTGTTTTTTATAGGGTTTATCGGGTGAATTACTTGGGAAAATAAAT
GAATATAAGAACTTTAATACTACTTTTACAAAATAATAGCTGTATAATAG
TATCAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9900:5104..5610+

>mRNA_D-dudresnayi_contig9900.28717.1 ID=mRNA_D-dudresnayi_contig9900.28717.1|Name=mRNA_D-dudresnayi_contig9900.28717.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at D-dudresnayi_contig9900:5104..5610+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCCGGCAATGCAGTACCGCGCCCAGCATCCGTCACCGGGGACTCGCT
GGGGACACAGCTGGTGTATGGACTGAGTAAGATGTCCCTCAGCAGCTCTC
CATTCCCTGAAACATCGAATAATAATGCTCAGTTAACAACAGCTCCAACA
CAATCTTATCATCATAATAATACTAGTACTGGTACTAGAGAGGGTTATTC
TCCTAGCAATCGTACTTCCTCATCAGGTGGTGGTGGTAGTAGTTATACTG
GTGCGATGGCCGGCAATGCAGTACCGCGCCCAGCATCCGTCACCGGGGAC
TCGCTGGGGACACAGCTGGTGTATGGACTGAGTAAGATGTCCCTCAGCAG
CTCTCCATTCCCTGAAACATCGAATAATAATGCTCAGTTAACAACAGCTC
CAACACAATCTTATCATCATAATAATACTAGTACTGGTACTAGAGAGGGT
TATTCTCCTAGCAATCGTACTTCCTCATCAGGTGGTGGTGGTAGTAGTTA
TACTGGTGCGGGTTTATCGGGTGAATTACTTGGGAAAATAAATGAATATA
AGAACTTTAATACTACTTTTACAAAATAAGGTTTATCGGGTGAATTACTT
GGGAAAATAAATGAATATAAGAACTTTAATACTACTTTTACAAAATAA
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