mRNA_D-dudresnayi_contig9896.28709.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9896.28709.1
Unique NamemRNA_D-dudresnayi_contig9896.28709.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9896.28709.1 vs. uniprot
Match: D8LTM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM5_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 2.070e-70
Identity = 115/145 (79.31%), Postives = 123/145 (84.83%), Query Frame = 1 
Query:    1 GAGGGGGEESNALLLRVDFEDAEVEELRQWIRRYPFGTTLPVQPFSLVVTKMGVDVVFRKKPTLERGSQDGGLSFVVEEGGRERDPDLSTGPTLVMRRISEGQEIRKMFAERIVVKAVVRSLAGRGNPPAPEGVKVRMVLHEGLV 435
            G GGGGGEESNALLLR+DFEDA+ EELRQWIRRYPFGT LPVQPFSLV T  GVDVVFRKKPTLERGSQDGGL F +E+     + D+ TGPTL+MRRISEGQEIRKMFAERIVVKAVV+SLAG G PP   G KVR VLHEGLV
Sbjct:   15 GIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPP---GTKVRTVLHEGLV 156
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BLAST of mRNA_D-dudresnayi_contig9896.28709.1 vs. uniprot
Match: A0A7S0L9D0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9D0_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 2.900e-16
Identity = 41/114 (35.96%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:   37 LLLRVDFEDAEVEELRQWIRRYPFGTTLPVQPFSLVVTK----MGVDVVFRKKPTLERGSQDGGLSFVVEEGGRERDPDLSTGPTLVMRRISEGQEIRKMFAERIVVKAVVRSL 366
            +LL+V     +   L+QW+ R PF + LPVQP  ++  K    +G+D+ FR+KPT+++ S +GGL F V   G      +     L++ R+S GQ I K F+ER++++ ++R L
Sbjct:   28 VLLKVTLARCDSHGLQQWLLRRPFASALPVQPMLVLPIKDPPPLGIDLTFRRKPTMDKSSSEGGLRFAVSAPGDGEAGVVDGDGILLVTRVSSGQSIGKGFSERVLIEMLLREL 141
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BLAST of mRNA_D-dudresnayi_contig9896.28709.1 vs. uniprot
Match: A0A7S0P2Y7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P2Y7_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 3.180e-15
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:   37 LLLRVDFEDAEVEELRQWIRRYPFGTTLPVQPF---SLVVTKMGVDVVFRKKPTLERGSQDGGLSFVVEEGGRERDPDLSTGPTLVMRRISEGQEIRKMFAERIVVKAVVRSL 366
            +LL+V       + L+ W+RR PF   LP+QP    +L   + GVDV FR+KP+ E+G+QDGG+   +   G +         +L++ RISEGQ   K F+ER + +++VR L
Sbjct:   36 VLLQVRLSSVNSDALQDWLRRRPFAAVLPIQPMLVQALQPPQQGVDVTFRRKPSSEKGAQDGGIRIAI---GHD---------SLLVTRISEGQYTSKAFSERALCRSIVRDL 136
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BLAST of mRNA_D-dudresnayi_contig9896.28709.1 vs. uniprot
Match: A0A7S2CIM1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIM1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.200e-11
Identity = 43/143 (30.07%), Postives = 73/143 (51.05%), Query Frame = 1 
Query:   43 LRVDFEDAEVEELRQWIRRYPFGTTLPVQPFSLVVTKMGVD------------VVFRKKPTLERGSQDGGLSFVVEEGGRERDPDLSTGPTLVMRRISEGQEIRKMFAERIVVKAVVRSLAGRGNPPAPEGVKVRMVLHEGLV 435
            + +  E   ++EL++W++ YP+   LPVQP  LV  +   D            V FR+KPT  +G  DGG+   +  G    D DL+    L +R +SEG  + K  +++++ K+++R L     P  P+ V +  VLH  ++
Sbjct:    8 VALSSEAGGIDELKRWLKAYPYPAVLPVQPM-LVDREWSCDNRPDEPTAETLRVTFRRKPTDAKGPVDGGIEITLVTGVDAADHDLA----LTLRALSEGNYVDKSLSQKLLAKSIIRDL-----PRVPK-VSITSVLHSAML 139
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BLAST of mRNA_D-dudresnayi_contig9896.28709.1 vs. uniprot
Match: A0A7S4IU80_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IU80_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.820e-6
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   10 GGGGEESNALLLRVDF-------------EDAEVEELRQWIRRYPFGTTLPVQPFSLVVTKMG--VDVVFRKKPTLERGSQDGGLSFVV 231
            G  G++ + LL R+               +DA +E++R ++R +PF   LPVQP + + T  G  V V F +K T E+GS DGG+ F V
Sbjct:   27 GAEGDDDDVLLXRLTLSVXXXXXXXXXXXKDAILEDVRSYVRSFPFAAVLPVQPLTYIPTADGGGVKVTFLRKKTKEKGSVDGGIDFDV 115
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9896.28709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTM5_ECTSI2.070e-7079.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0L9D0_9EUKA2.900e-1635.96Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0P2Y7_9EUKA3.180e-1538.05Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2CIM1_9STRA1.200e-1130.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4IU80_9STRA1.820e-635.96Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9896contigD-dudresnayi_contig9896:5013..8877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue4.2e-30
Seed eggNOG ortholog2880.D8LTM5
EggNOG OGs2EA7H@1,2SGGG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size814
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9896.28709.1prot_D-dudresnayi_contig9896.28709.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9896 5389..7492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.1558564-UTR-D-dudresnayi_contig9896:5012..53881622930950.1558564-UTR-D-dudresnayi_contig9896:5012..5388Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9896 5013..5388 -
1690557976.935261-UTR-D-dudresnayi_contig9896:5012..53881690557976.935261-UTR-D-dudresnayi_contig9896:5012..5388Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9896 5013..5388 -
1622930950.2703297-UTR-D-dudresnayi_contig9896:7492..75471622930950.2703297-UTR-D-dudresnayi_contig9896:7492..7547Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9896 7493..7547 -
1690557976.9699543-UTR-D-dudresnayi_contig9896:7492..75471690557976.9699543-UTR-D-dudresnayi_contig9896:7492..7547Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9896 7493..7547 -
1622930950.2947774-UTR-D-dudresnayi_contig9896:8779..88771622930950.2947774-UTR-D-dudresnayi_contig9896:8779..8877Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9896 8780..8877 -
1690557976.9783802-UTR-D-dudresnayi_contig9896:8779..88771690557976.9783802-UTR-D-dudresnayi_contig9896:8779..8877Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9896 8780..8877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.171561-CDS-D-dudresnayi_contig9896:5388..55051622930950.171561-CDS-D-dudresnayi_contig9896:5388..5505Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9896 5389..5505 -
1690557976.9463115-CDS-D-dudresnayi_contig9896:5388..55051690557976.9463115-CDS-D-dudresnayi_contig9896:5388..5505Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9896 5389..5505 -
1622930950.1966326-CDS-D-dudresnayi_contig9896:7014..71561622930950.1966326-CDS-D-dudresnayi_contig9896:7014..7156Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9896 7015..7156 -
1690557976.9541168-CDS-D-dudresnayi_contig9896:7014..71561690557976.9541168-CDS-D-dudresnayi_contig9896:7014..7156Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9896 7015..7156 -
1622930950.2436619-CDS-D-dudresnayi_contig9896:7466..74921622930950.2436619-CDS-D-dudresnayi_contig9896:7466..7492Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9896 7467..7492 -
1690557976.9621162-CDS-D-dudresnayi_contig9896:7466..74921690557976.9621162-CDS-D-dudresnayi_contig9896:7466..7492Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9896 7467..7492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9896.28709.1

>prot_D-dudresnayi_contig9896.28709.1 ID=prot_D-dudresnayi_contig9896.28709.1|Name=mRNA_D-dudresnayi_contig9896.28709.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=95bp
MGVDVVFRKKPTLERGSQDGGLSFVVEEGGRERDPDLSTGPTLVMRRISE
GQEIRKMFAERIVVKAVVRSLAGRGNPPAPEGVKVRMVLHEGLV*
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mRNA from alignment at D-dudresnayi_contig9896:5013..8877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9896.28709.1 ID=mRNA_D-dudresnayi_contig9896.28709.1|Name=mRNA_D-dudresnayi_contig9896.28709.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3865bp|location=Sequence derived from alignment at D-dudresnayi_contig9896:5013..8877- (Desmarestia dudresnayi DdudBR16 monoicous)
GGGGCGGGGGGGGGTGGGGGCGAGGAAAGCAATGCCCTGCTTTTGAGAGT
GGACTTTGAGGACGCGGAAGTTGAGGAGTTGCGGCAGTGGATTCGACGGT
GAGCTTGATTTCTGGTGAGCAATACCTGGTAATCTACAACAGCAAGATAC
TACAACAGTACAACGACAGTACATGGACCCCGCCGCCTGTGTCTGCCCTT
GCAGCGCTATACGCACAAGGGCGGCCCCATAGGGTCAGCCGTTGTAGTAG
AAGCGCGGGCGTCTCTGCACTATTTTCTTTTTACGTTTTACCACTGCTGG
TTGTATCATGCAATTTGGATACGATCGTACTCAGCTCGAGCACAGCAGCA
GGACCGTTCGTTTTGCGCCAGTTAGCTGTTGCTGAACTACGATACACGAT
GACCGGCTGAGGCTCGTATATAGAGGACTTCGCAATGTCGTTGTACGGGT
CCTCTAAACGTTCGGGTGTTGATTGTGCCGAGCCGACCCAAGCCAACCCT
AACATCAACCCTAACCACCAACTATACGCCGATGACAAGATTGGCGGCGC
GAAAATCCGCGCCTTCGGCGCCGAAATGGAGTAAAAGTACTGTTGACTCT
CCAAGACTGTCAGGTTGGAAAGTTTCTGGAGTATGTTGTGTGAACTACAT
AAGAGTTATCATAGTGTGGTCGACCATAGTTTAGTACCAGGTATTAAATA
AGCCTCGAAGTCTACCGCCGTGTTCGCTGGGCGAATCACTCGACCTTAGG
CCTGGGCATCCCGTGACGCCTACGTGGCCGTTCTGTGGCAAACGCGTGTA
CAGTACTACAGTATTCGGTTTTGCCGTCGCGTGTTTTTCTTGCCTCCACG
TTATGGTCTTGATCGCATGAAATATCCCGTCGATGCGCATATTTCATCGT
CGCCGCTTTTGTAGCGCCGACAGGTGTAGAATGCCTTCAAGCCTTGGCAG
CAATCCTTGTACCCACAACATTATGCCCGTGGCACCATGTGATCTAAGTG
CCTTACGTATGCTTCACGCTTGCCGACTTCGGCCGTGAGCGAGGCGGCTT
TGGTTTTTGAGTGCCGTGTGTGTTCCTCGTATTATATATACGAGTACATC
GAGGAGCGTGTCCGCGTCGTTAGGGCGGTAAGCCTAAGATATTTGGCTCT
TATACTACTACTACCTGTAGCTCTTTTCGGAACGAAACGGCGACTCCTGC
GCTTCTCCCCGTGTCGCGTGTTCCCGACGCCCCCCCCCCCGCCCCTCTCC
GATTCGTTCCGACACACCACTAATGGCGTTAACTCCGATCTTCCCTCCTC
CGCCATCGTGTCGTCGGTTGGCCCGGGCAGGTATCCGTTTGGAACTACTC
TCCCCGTGCAGCCTTTCTCATTGGTTGTGACCAAGATGGGGGTGGACGTC
GTTTTTAGGAAGTGAGTCCTGTGCTACTACTGTGTGCTGTACGGTAAATG
TGTTGTAATCGGTAGTCAAAGGATTCGAATTTGTTTTATGTACGATAGAG
ATCGTGGTTATCTTTCTTAAAAACAAAAACGCGGGTTGGGTACATGAATT
TCATGATTCCAGCAGTGGCGGCGGCGGTAGCTTCCGGGTGACACGAAACG
ATGCCCGAGGCACATGCCTGCCGCGGTGTGCAGACCCCTATTTTCCTCCC
CATCGGTGTCCCTCTAGAAAGAAACCCTGAGTCGTCCCCTGATGCCTTCG
TATTCGACGTGACGCTTGCAGGAAGCCGACGCTAGAAAGGGGGTCTCAGG
ACGGTGGGCTGTCGTTCGTGGTAGAAGAAGGCGGCCGTGAACGTGACCCC
GACCTATCAACGGGCCCCACGCTTGTAATGCGTCGCATTTCTGAAGGACA
GGAGATCCGCAAGGTGAATGGGGGGGGGGGGGGGGGGGGGGGAAAGGGGG
GAAAGGAGGAATAAATGGTTGGAGAGATTTGGGAGAAAACAAAAGGGGTT
TTNNNNNNNNNNCGCGGAACGCTCACCCCTTTTAAAAGCCGGCCCCCGGT
TTATGGGGGGGCGGATTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGTTGTGCGATAGTCGGGCAAAGTAGTATTAATAGTATG
ATAGTATTTGGACGAAACTACAAGGGTATTTCGAGACTTCGGTTGGTTTT
GGCGCAAGCCACATAATTTTGAGAATTCACTTGGCGTACTGAATTATGTG
GTGCCTCCTTTTTCTTGTTTTTGTTGGGGCCGGGGGGGGGGGGGGTGGGA
GGGGCAAGTGTTACGTGCGTGCAAGATTCTCAGCGCGCCGTTTTTGGCGA
ATCTACTCTATATTTCACAATCCGCTGTCGGCACATGATCCTTTCCTGTT
GGTTTTTCTCTTCCAATGACAACACGGAGCACGCGCATTCCACCAGCGCA
TATTAAATAGTGTGTCTCGTTACCTGTTTTAAGCTCCACATTTTAGACGA
TAATGCAGACTCTGGGGTGGCGCATGGCGCGGGCTCATCAAACCATACAC
ACAACGCACACAGAGCGAACGAGAGAGATAGTCTAGCGCCTCAAATAGTA
TGCAGCTGTCGCGAAAAGCGAAGGGTTGTGGATGGTTCATGACTTTAGCC
ACTCTCTTTTGGCGTCGTTGACCTATCATAGTAACATAATATCCCGTAAA
TGTTCTTGGTCGCTTTAGAATTGAAGCAACGAGCTTATAGCTTGTCCCTG
CCAATCTGGCTGCCGCGTTGTTCGGTGTCGTACAGCTTCGCAGCGTTGCT
TTTTGATGGCCGGCAACAAAATACCATCCACCGTAAAAACAGGTTGAAGT
TTTCACATATCTACAAGTAATGCAGGAGTAGCGCACCGACACCGGACCTT
TTGGCGAGAGTTTCCCATCGACAACACCTGCACCCTTGTGATCCCCGTCT
CCCCCTCTCTCTTTATCTCTCAAGGCTCTAGTTTTCAGTAGGTTTTTGGC
ATTTTTTTTGTAGGAAAGATCTTTAGAGAGGATTTGACTCTATATTATGA
CAATGACAGTAGTGCGTTCGTTACGGTTCGGGTTAGAATTGGTGATAAAA
GTTTCGGAACTGTTGAACAGCCCACGTTGTTACTAATCATACATCATACA
TCATACATCATACATCTAATAAAACGAACATCCTAAAGATCCGGCCTACA
AAAACAACAATTGAGGCGGCTATTTTTTTTTGCTGCTAGGGTGGAGGCAG
AATAGATGGAGCTCAGCGTGTCAATCATTACATGTCGTACGAGCACGACT
TTTGATTGTAGGCCAATCTGCTATAGCCGTGTGTCGGCCAATCAAATCAC
TCTTGACACCACCACCTTCTGCGTCGTGCCGCACTACCGGTGACTTCGTT
TTTGTGTTTGCTCTTGGTGCAGATGTTTGCCGAACGCATCGTGGTGAAAG
CCGTTGTCAGGTCTCTTGCGGGACGAGGGAATCCGCCGGCACCAGAAGGA
GTCAAGGTCCGCATGGTGCTCCACGAGGGCTTAGTCTAGTTTAACGCAAC
GTGTTGTATTTGACTAGTTTACCTTTTTTGTGTCGACCAAGCGATGCGTA
TGTTCTAGGGTAATTATTTAATATGTCACAAGTTAATGAGCAGAGGGGTC
ATCCGACACTGAGTACCCCGCGGCGCAATGGGTTGTCGAGCTCCTTGTGC
CAGGCAATATTGATGGAAGTCGCGTTCGGGTACGATAACGATTCGTGCTG
TTTTTGGTGCTTCAGAGCTATGCGGTAGAAGGAGCACTTGGTGGTTTACC
GGCTGGGTAGTAGTAGTAGTACTACTGCTACTACCACTACTGCTACCACT
ACCCTGGGTGAATGGAAGAAGAGCCGCCCAATGGACTTGCAGTCGAGGGT
CGCTGCCTTGTCACG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9896:5013..8877-

>mRNA_D-dudresnayi_contig9896.28709.1 ID=mRNA_D-dudresnayi_contig9896.28709.1|Name=mRNA_D-dudresnayi_contig9896.28709.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at D-dudresnayi_contig9896:5013..8877- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGGGTGGACGTCGTTTTTAGGAAATGGGGGTGGACGTCGTTTTTAGG
AAGAAGCCGACGCTAGAAAGGGGGTCTCAGGACGGTGGGCTGTCGTTCGT
GGTAGAAGAAGGCGGCCGTGAACGTGACCCCGACCTATCAACGGGCCCCA
CGCTTGTAATGCGTCGCATTTCTGAAGGACAGGAGATCCGCAAGGAAGCC
GACGCTAGAAAGGGGGTCTCAGGACGGTGGGCTGTCGTTCGTGGTAGAAG
AAGGCGGCCGTGAACGTGACCCCGACCTATCAACGGGCCCCACGCTTGTA
ATGCGTCGCATTTCTGAAGGACAGGAGATCCGCAAGATGTTTGCCGAACG
CATCGTGGTGAAAGCCGTTGTCAGGTCTCTTGCGGGACGAGGGAATCCGC
CGGCACCAGAAGGAGTCAAGGTCCGCATGGTGCTCCACGAGGGCTTAGTC
TAGATGTTTGCCGAACGCATCGTGGTGAAAGCCGTTGTCAGGTCTCTTGC
GGGACGAGGGAATCCGCCGGCACCAGAAGGAGTCAAGGTCCGCATGGTGC
TCCACGAGGGCTTAGTCTAG
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