mRNA_D-dudresnayi_contig9888.28702.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9888.28702.1
Unique NamemRNA_D-dudresnayi_contig9888.28702.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9888.28702.1 vs. uniprot
Match: D7FY84_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY84_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 8.400e-24
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 2 
Query:   71 DESRGPYFPFNRTEPYPKRVKVDFRRLPRRTLLTYTGHHDLNVRPDCSHEELAIAAAR 244
            DESRGPYFPFNR E YPKR+KVDFRRLP  TLLTYT HHDL+VRPD +HEELAIA AR
Sbjct:    7 DESRGPYFPFNRRETYPKRLKVDFRRLPTSTLLTYTAHHDLHVRPDSTHEELAIATAR 64
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BLAST of mRNA_D-dudresnayi_contig9888.28702.1 vs. uniprot
Match: A0A6H5L5U0_9PHAE (SAP30_Sin3_bdg domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.690e-13
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 2 
Query:   77 SRGPYFPFNRTEPYPKRVKVDFRRLPRRTLLTYTGHHDLNVRPDCSHEELAIAAAR 244
            S GPYFPF+R E YP+ + V+F+RL  RTL  Y   H +NVRPDCS  ELA+AAAR
Sbjct:    9 SPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAAR 64
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BLAST of mRNA_D-dudresnayi_contig9888.28702.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 3.360e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:   83 GPYFPFNRTEPYPKRVKVDFRRLPRRTLLTYTGHHDLNVRPDCSHEELAIAAAR 244
            GPYFPF+R E YP+ + V+F+RL  RTL  Y   H +NVRPDCS  ELA+AAAR
Sbjct:   11 GPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAAR 64
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BLAST of mRNA_D-dudresnayi_contig9888.28702.1 vs. uniprot
Match: A0A7S4DFH4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFH4_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 4.460e-12
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 2 
Query:   86 PYFPFNRTEPYPKRVKVDFRRLPRRTLLTYTGHHDLNVRPDCSHEELAIAAA 241
            PYFPF+R E YPK  KVDFR+L   TL  Y   H +NVRPD + EELAIAAA
Sbjct:   21 PYFPFHRDEVYPKGTKVDFRKLKASTLELYALKHKINVRPDATREELAIAAA 72
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9888.28702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FY84_ECTSI8.400e-2482.76SGF29 C-terminal domain-containing protein n=2 Tax... [more]
A0A6H5L5U0_9PHAE3.690e-1360.71SAP30_Sin3_bdg domain-containing protein (Fragment... [more]
D7FGV9_ECTSI3.360e-1261.11SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S4DFH4_HETAK4.460e-1263.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9888contigD-dudresnayi_contig9888:2148..3251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D7FY84
EggNOG OGs2CZEN@1,2SA0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP30, SGF29 and Winged helix-turn-helix DNA-binding domain protein
Ec32 orthologEc-24_003440.1
Exons3
Model size247
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9888.28702.1prot_D-dudresnayi_contig9888.28702.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9888 2148..2864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.2597396-CDS-D-dudresnayi_contig9888:2147..22401622930949.2597396-CDS-D-dudresnayi_contig9888:2147..2240Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 2148..2240 -
1690557976.6170168-CDS-D-dudresnayi_contig9888:2147..22401690557976.6170168-CDS-D-dudresnayi_contig9888:2147..2240Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 2148..2240 -
1622930949.2865057-CDS-D-dudresnayi_contig9888:2747..28641622930949.2865057-CDS-D-dudresnayi_contig9888:2747..2864Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 2748..2864 -
1690557976.6276882-CDS-D-dudresnayi_contig9888:2747..28641690557976.6276882-CDS-D-dudresnayi_contig9888:2747..2864Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 2748..2864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.311769-UTR-D-dudresnayi_contig9888:2864..28791622930949.311769-UTR-D-dudresnayi_contig9888:2864..2879Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9888 2865..2879 -
1690557976.6360953-UTR-D-dudresnayi_contig9888:2864..28791690557976.6360953-UTR-D-dudresnayi_contig9888:2864..2879Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9888 2865..2879 -
1622930949.3436437-UTR-D-dudresnayi_contig9888:3229..32511622930949.3436437-UTR-D-dudresnayi_contig9888:3229..3251Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9888 3230..3251 -
1690557976.6442022-UTR-D-dudresnayi_contig9888:3229..32511690557976.6442022-UTR-D-dudresnayi_contig9888:3229..3251Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9888 3230..3251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9888.28702.1

>prot_D-dudresnayi_contig9888.28702.1 ID=prot_D-dudresnayi_contig9888.28702.1|Name=mRNA_D-dudresnayi_contig9888.28702.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=70bp
MEAMQQDNHMEDESRGPYFPFNRTEPYPKRVKVDFRRLPRRTLLTYTGHH
DLNVRPDCSHEELAIAAAR*
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mRNA from alignment at D-dudresnayi_contig9888:2148..3251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9888.28702.1 ID=mRNA_D-dudresnayi_contig9888.28702.1|Name=mRNA_D-dudresnayi_contig9888.28702.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1104bp|location=Sequence derived from alignment at D-dudresnayi_contig9888:2148..3251- (Desmarestia dudresnayi DdudBR16 monoicous)
GTAAACGTGTCGCGGATATACGGTGAGAGAGCAAGCTAGGAAGTAGGACT
TTTGCGGAGTTTCTACCGTGTTTGTGCCAGACTCGGCCTTGTGATTTAGG
TGGAGCTTTAGAACAAGGAACGTTTGCAGAGCAGGACAGTATACATCGAC
GCGAGAGATACCAACCGCCTGGGTTGAACCACGACCAGTGGCCGTTTACT
GCGGATTTTCTCCTCAGCAACGTCGTTGGCGACTTCTGTCGGCGAGCTTT
GCCTTGGAAGTCGTAGCAAAGCTTTCGGGTTCGGTCGATTACATCGCTGC
ACCTCTCAGCAGTTTTCTGCTTGTACAAAGGTTCAACTATAAATTACAAG
CATCTTTTGAACCGGCTGACAGGTGCTTGCATCCAAGATGGAGGCAATGC
AGCAAGATAACCACATGGAGGATGAGTCGCGAGGCCCCTACTTCCCCTTC
AACAGGACAGAACCATACCCTAAGCGGGTCAAAGTGGACTTTCGCCGGCT
CCCGGTACGTGTGCGAGCTTGTTGGGTTGAACAAACCGTACACCAGCTTT
TTTTGTTGTTGCATTTTTTACGGATGCATCCACTGTCCAGCCAGAGAGCG
CAGCAGATAGCATGTGACAGCCCATGCTTCCACCGCACTCGTAGTACAGC
TGCTGTGGGTGTTCGCGCGACATGCAGGCGCAGATAGGGCTGGTACTACA
CCTTGTACTGTGAAGGCAAGCAGCGATAGGCTGTCTTCATATCGTTGCTG
CAGCTGTGTCGTCGCATGTTGTCTGCTTGTTCGTATACTCGCTCGATTGT
CGTTTTTTTTTTTGGCTCACTGATATTTTTTCTACAGAGCAGAGCAGCAA
CAAAATCAAATGTTGTATATGCGGTCTCCATGTGTTTTGTTCTTCGTACA
TTAACAACAAGTATATTTTGTTTCTTTTCTGTTTAGTCTTAAATTGACTT
TGAGGGTGGCTGTTTGAACCTACTACTGTGCCACTGCTGCTGCTGCTGCC
GACAACCACAGCGAAGAACTTTGCTGACGTACACTGGACACCACGATCTC
AACGTTAGACCCGACTGTAGCCACGAGGAGCTAGCCATCGCAGCAGCCCG
GTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9888:2148..3251-

>mRNA_D-dudresnayi_contig9888.28702.1 ID=mRNA_D-dudresnayi_contig9888.28702.1|Name=mRNA_D-dudresnayi_contig9888.28702.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at D-dudresnayi_contig9888:2148..3251- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAGGCAATGCAGCAAGATAACCACATGGAGGATGAGTCGCGAGGCCC
CTACTTCCCCTTCAACAGGACAGAACCATACCCTAAGCGGGTCAAAGTGG
ACTTTCGCCGGCTCCCGATGGAGGCAATGCAGCAAGATAACCACATGGAG
GATGAGTCGCGAGGCCCCTACTTCCCCTTCAACAGGACAGAACCATACCC
TAAGCGGGTCAAAGTGGACTTTCGCCGGCTCCCGCGAAGAACTTTGCTGA
CGTACACTGGACACCACGATCTCAACGTTAGACCCGACTGTAGCCACGAG
GAGCTAGCCATCGCAGCAGCCCGGTAACGAAGAACTTTGCTGACGTACAC
TGGACACCACGATCTCAACGTTAGACCCGACTGTAGCCACGAGGAGCTAG
CCATCGCAGCAGCCCGGTAA
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