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Homology
BLAST of mRNA_D-dudresnayi_contig9882.28692.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 3.100e-18 Identity = 55/97 (56.70%), Postives = 64/97 (65.98%), Query Frame = 2
Query: 200 ARKDFNIYMSKLLEHSAALDTFRPEDTRKLERTTGGASAGSSPAWGPAVGVSEDAGSAEARLGSPRAGP-VEVPLT-FTPSYFRETR-AWPRAGAVT 481
ARKDF IYM KLLEHS ALDTFRP+ TG PAWGP++G+SE+ GS GSP AG V+V + F+PS FRE + AWPRAGAVT
Sbjct: 3 ARKDFKIYMDKLLEHSTALDTFRPDKRHSDAGDTGSGV----PAWGPSLGMSEEGGSVGEARGSPPAGAAVDVTMPPFSPSRFREEKHAWPRAGAVT 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 486 |
| Cds size | 333 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930948.2317312-UTR-D-dudresnayi_contig9882:7497..7558 | 1622930948.2317312-UTR-D-dudresnayi_contig9882:7497..7558 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9882 7498..7558 - |
| 1690557976.2756143-UTR-D-dudresnayi_contig9882:7497..7558 | 1690557976.2756143-UTR-D-dudresnayi_contig9882:7497..7558 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9882 7498..7558 - |
| 1622930948.2522147-UTR-D-dudresnayi_contig9882:7749..7839 | 1622930948.2522147-UTR-D-dudresnayi_contig9882:7749..7839 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9882 7750..7839 - |
| 1690557976.284096-UTR-D-dudresnayi_contig9882:7749..7839 | 1690557976.284096-UTR-D-dudresnayi_contig9882:7749..7839 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9882 7750..7839 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9882.28692.1 >prot_D-dudresnayi_contig9882.28692.1 ID=prot_D-dudresnayi_contig9882.28692.1|Name=mRNA_D-dudresnayi_contig9882.28692.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=111bp
MLAGRAGCSHPHAIDKARKDFNIYMSKLLEHSAALDTFRPEDTRKLERTT
GGASAGSSPAWGPAVGVSEDAGSAEARLGSPRAGPVEVPLTFTPSYFRET
RAWPRAGAVTL back to topmRNA from alignment at D-dudresnayi_contig9882:3345..7839- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9882.28692.1 ID=mRNA_D-dudresnayi_contig9882.28692.1|Name=mRNA_D-dudresnayi_contig9882.28692.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4495bp|location=Sequence derived from alignment at D-dudresnayi_contig9882:3345..7839- (Desmarestia dudresnayi DdudBR16 monoicous)
CGAGTACTTGTTGTTGTTTTCCGCTCATTCCCTCGTCGCTCGGCGAACAA
CAGACCACGAGGACACCAGGCACATCGTATACCAAGCAAGGTTAGAGGTA
TCCGATCCGCCCCTGCCGCCCATGTGCATCTCCGGGGATGTCTTAGTCAC
AAGAACGCTTATGTTGTCTAGCACCTGGATTTGATTATACATAAGAGATA
GTTTTTCAGCTGCACGTGTAAAATACAGCTTACCTCTCTGTTCTCTGCTC
CTCTCTTGTCTCGGATTCGCTGTGCGCGGAGGTGCTTGAACTGATCTGAT
CGAAAGAAAATCAGGAGGGATTCCAGCTACGCCAGCGTTACCATGTTGGC
AGGCAGAGCAGGGTGTTCGCATCCTCATGCTATCGACAAAGCTAGGTAAG
CCCATCACGAGGGTCGTTATGTGATCGCCAGGTTAGGTTGGCGTTGGACG
TTCTGTGGAGTAGACTATCAGATGACATATCAGATGACTACTGTTGTTTT
CTGATACATTATGCTCTGTTCACAGTAGTAGTGATGTAGTAATACACGAT
ACTACAATGCGTCTGTATCGCTACTGCTACGATACTACTACTGTTGTTGT
ACTGTACTGGTGTGCCCAGCGAGGTGACCGTGCCCGTAGGAGCCGAAAGA
GGCGCAGCAATGATACAGCAGACGTGGAATTCAACAGAATTGTTGTTCAA
GTACTACTTCGAAGTATGAGTTTTTAAGATGATGGTGATGGCGATGGGGA
CGATGACGATGAGATGAAACTCCGTCGTGCAGCCCATTCTTCCTTCAAAA
GCGAAGCCATTGGGGCGTCGTTACCTCGCGGCAGATATGATAGAGGCGTC
TGTTCCCAAACTCGCGCCATAGAGACAATGCCAATGCAATCGGCGGTTGC
AGTGGTATGCGTTATGAAGTCGTGGTGGCAGCTGGATCTTTCGATGCTTC
CTGTCTCTTGTCGCTGATTGTCTGTGGACGACTTGTGTGTTCCCACTACT
AATAGACTAGCATACGAAGTACTACAACAGTAGTACTGACTCTTGTATAG
CCGCGATTTACTGCTGTCATACTCTACTACTGTTGTTGTTCGGCTGCCCT
CGAGGTCTACACTACGAGGTACTACTACTGTTGTAGGGCACCATTATTGT
GCAACCATATGCAATATGGGGATGGAAACACGCGAGTGAGAGAGATTTTT
GTACCGTTGTGGTGGCATGATTCGCTACTCTGATACTACTACTACTGTTG
TTGTACATAGAGCATTGTGGTTTGACATCGTAGTTATACGGGTATGATGC
GATTCCCCATCAGAAAGGCTACAACAGAACCGTCAGACAGTACAGAGTAG
TATCATAGTCTGATACTTGGTACTGTACTGAACGAGAGGATGGAGCCTAA
GCTACTGCGCTGTACCTTACCTGAGGACCGATAGAATACCCGCCATCGAA
GTATACGTATATATCACACATCACACAGTAGTCAGTAAAGTTGACGATCA
TCCCCTGGATGCCGAACCAGATCTGAAATAGGAACGTCATGGCGATTGTA
TTTGTTAAAAACCAGTACGTAGTACGTAGGCACCACGGCGTTGCCCGTGC
ATTGTGGGCTCGAAGGGTGAGTGACATCCTACCCCAACTCAACCCAACCC
AACCCAACCCAACCCAACCCAACCCAACCCAACCCAACCCAACCCAACCC
AATCCTCCGTACACAATGTTAAACAATAAAAAGAGTAGGCAACGGAGGGA
CGACAAAAAATCACTTGATTACAGTACCGAATTTCGACGAACCTTACGGT
ATTAAGTAATAAGGATTGCACAGTTGTTCATGATATGATAGTACCGCATA
CCCTGCTCCTTGTTGCTCGTGTGTCTAACGGTATTGTCTATATTACGACA
TTGTGTAACCCCGCGCGCAGGAAGGACTTCAATATTTACATGAGCAAGCT
GCTTGAGCACAGCGCTGCGTTGGACACGGTGAGAAAGTGTCCAGTAGAGT
GCAGTACAGGCATCACCATACTCGTACCTACTAGTAAGTCCTATCATATT
CATATTATAGTACAACAACAGTACCGGTACCATCGTAGTCGCTGTTTGAG
GGCTGAATGCGGTGCAACGAGTACGGCCGGCTACGTACAGATTGTCGATG
CTTTGTCTATTATATAGCAAACGAAACAACAACTGGGACTGTATTCCCTA
CCTGGAACAGAGAAAAAATCGTGGGAATACTGTAGTCCGCATAACTGAGG
AATAGTACGCGGTCGCCCGAAATAAAACATGCTTCTATCTATTCCTTGGT
AGTATATTGAAATGGTTCCCCGACGTGTGTATCTCGTGGTGAGCAGTATA
TTATCGGTGAGTTGCCCACTCATATCCTGCGCGTATACGCGTCAGAGCTG
ACGCGCGAGGAGGGCATGCCGCTGTTATACTTGGGGAAATATGTCGCGTG
TTTTCATGTCACCGGGGGGGGGAGGGGGACGTACTCATTTGTTGCTTGCT
TTAGTCATTTGACCATTGACCACGCACCCCTTTCGAGGCGGAGCACAGTT
CCTACTCCTAATAGAGACACCTCCTACATTTGGGCGCTCTTTACGTTTTT
TCCATATCCACATAAGAACCTTTTGCATATCTTATCCCATTCCTGTTTCG
CCTTTTGTGGCCATGACCTATCTCCTAGGATGGCGATCGTTTTCTCACTA
TTATCTATTAATAGTGTACCAAACTTCTCCATGTCACATCCGTCCATTTT
CCTCATCTCTTCCTCCAGCACATCCCGTTCCTCGTTGTACAATTCACATT
CTCTCACTATGTGATCTCTACTATCTTGGGCCTTGCCACAAGGGCACACC
TGTGCAGGGGGGGACGAAAAAGGTCTTGAGCTCGAGGGTATCATGGCGGG
GCTTTTGTTGGGAAGCGCGCATGAGGAGATTATATCGATGTTTGTTTTGT
GAGGTCCTATCCTGTGATAGATAGCGTGGGTTCTATTTCAGACGGGGTGG
GTCATCGATCTGCGGTGACGAGAAGAGGCAATCGATTGCTCTTGTCAAGT
GCTTCGAACGAGACAGAGACGTACCGCTCCTCCCATGAATACGTTCGATT
TCCACACTTTTGACTGCGATGCAGCTACGTATCATACCACCAGTACTTTT
CTACGGTGGCCTATCAGAATGTAAATGTTGGCCTGTGCCAGAGCTCTCCA
ATCGGCTCTGCTCCTCGTGTACTCTATCGTACTATTAATACTGTGCTGTA
GCACCAAGAGGACATTGGTATCGGTCGCCGTTTGGAGTTGGCCAAGAGGC
CACCCACCTCCTTCTGTTGTGCTTCTTCTATATGTGCGCCTTTATTTTTC
TCTTCTTTTTTTTTGTTGCTTTTTGTGCATTGTGTCCCGGAGTCACACCG
ACGAGATACAGACAGTAGGTCGATGTTACGATACAGAGAATGCCTATGAA
ATGTGCATTTATCATGTGATATGGTAGCCGCTTGCGTCTCCGGTATGGTC
CGTCGAAAATGTTCCCCGCGGCACCTTACCCCTCCATGGGCGTCACCTCT
GACAAGCCTCTGTGGCCGACGGCTGTTTGACCGACGGCTGCTCGTCGTGG
TGAACCATCTACGCGACAAGGAACACTCACTATGTCAATCATTCGGTATA
CTCAACGTATATAGTGCACTCCTTTATTTTCCTGTTAGTGCAAAGGCCCC
CACGTCACGTCGGTTGTGCTCTACTCTGGTACTAATGGTCCATCTTGCCC
CGTCTCGCTCGTATTGCTTCAGATTTGTCGGGTGTTTTTTTTTACGCGCC
AACAAAGTGCTTTGCCGAAATAAATCGAGGCAAGGAATCCCGTTTGAGAG
CTATTGCCTTTGCTATCGTTTAAAAAAACTCACTCGCCGTGTGTCTTGGC
AAATAAATGTAAAAAATCCCCCGAAAAACAGTTTCGGCCTGAAGACACGC
GAAAGCTGGAAAGGACGACGGGTGGTGCTTCTGCCGGCAGCAGCCCTGCT
TGGGGTCCCGCAGTAGGGGTTTCGGAAGATGCGGGTTCCGCCGAAGCGAG
GTTAGGAAGCCCCCGTGCGGGCCCGGTGGAGGTGCCATTGACATTGTGAG
TTATCAAAGTTCGTCCTGTGTTTACTGCCTTGCTGTTGTTTTGGTTTTCG
TGTTGGTGTTGTGTTGTGTTTGGTGGGTAGCCTTGTTACTGGTACGAGTA
CTACTACTCTACGACCGCCCTCATGGGTGATTGATATTTTCCAGTCGGCC
TTTTTGTATGGGGGGGTGGGGGGGGAGCGTATTCATATTTTCTCGAAATG
ATTTAAAAATAGTATCTGGAAGTGGAGAGCGACGGCTGCAATCCTCTTGA
GTTGAACTCACTTGTATTTCCCCCCCTTGCCGGCCCCCGCCCGGCCCTGT
TCCAACGTCACCGATGCTGTCCTTGACGTTTGCGAAGTACCCCGAGTTAT
TTCCGCGAGACGCGCGCCTGGCCTAGAGCCGGCGCCGTGACCCTC back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9882:3345..7839- >mRNA_D-dudresnayi_contig9882.28692.1 ID=mRNA_D-dudresnayi_contig9882.28692.1|Name=mRNA_D-dudresnayi_contig9882.28692.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at D-dudresnayi_contig9882:3345..7839- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGGCAGGCAGAGCAGGGTGTTCGCATCCTCATGCTATCGACAAAGC
TAGATGTTGGCAGGCAGAGCAGGGTGTTCGCATCCTCATGCTATCGACAA
AGCTAGGAAGGACTTCAATATTTACATGAGCAAGCTGCTTGAGCACAGCG
CTGCGTTGGACACGGAAGGACTTCAATATTTACATGAGCAAGCTGCTTGA
GCACAGCGCTGCGTTGGACACGTTTCGGCCTGAAGACACGCGAAAGCTGG
AAAGGACGACGGGTGGTGCTTCTGCCGGCAGCAGCCCTGCTTGGGGTCCC
GCAGTAGGGGTTTCGGAAGATGCGGGTTCCGCCGAAGCGAGGTTAGGAAG
CCCCCGTGCGGGCCCGGTGGAGGTGCCATTGACATTTTTCGGCCTGAAGA
CACGCGAAAGCTGGAAAGGACGACGGGTGGTGCTTCTGCCGGCAGCAGCC
CTGCTTGGGGTCCCGCAGTAGGGGTTTCGGAAGATGCGGGTTCCGCCGAA
GCGAGGTTAGGAAGCCCCCGTGCGGGCCCGGTGGAGGTGCCATTGACATT
TACCCCGAGTTATTTCCGCGAGACGCGCGCCTGGCCTAGAGCCGGCGCCG
TGACCCTCTACCCCGAGTTATTTCCGCGAGACGCGCGCCTGGCCTAGAGC
CGGCGCCGTGACCCTC back to top
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