mRNA_D-dudresnayi_contig9870.28689.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9870.28689.1
Unique NamemRNA_D-dudresnayi_contig9870.28689.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: F0YKE5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKE5_AURAN)

HSP 1 Score: 65.5 bits (158), Expect = 4.960e-11
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 MSNSVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGRIIK 231
            ++  VYV  LAW T+ + L  HF Q G V +A V+ + R G+  S G G+VEF +PEEA+ A+  LN+S+LDGR I+
Sbjct:  156 VARRVYVGNLAWGTSWQDLKDHFRQCGSVVHAKVM-EERPGR--SKGWGIVEFEAPEEAVAAIEQLNDSDLDGRPIQ 229          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: A0A7S0BFC3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFC3_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 2.190e-10
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   10 SVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGR 222
            +V+V  L+W T  + L  H  Q G+V +A V +++    A   GCG+VE+ S +EA+HA+N +NNS LDGR
Sbjct:    6 TVFVGNLSWDTRWQGLKDHMRQAGNVVHAEVFSEASGRSA---GCGIVEYESTDEAMHAINTMNNSMLDGR 73          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: A0A1F7SG28_9BACT (RRM domain-containing protein n=1 Tax=Candidatus Shapirobacteria bacterium RBG_13_44_7 TaxID=1802149 RepID=A0A1F7SG28_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 3.230e-10
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 MSNSVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGRIIK 231
            M+  +YV GL++ TT++ L   F Q G + +AVV+    +G+  S G G VE  + EEA+ A+ M N  ELDGR +K
Sbjct:    1 MAKKLYVGGLSYQTTDDSLQAAFAQAGTIVSAVVIKDKFSGQ--SKGFGFVEMSTDEEAVAAIEMWNEKELDGRTVK 75          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: A0A7S0G5R6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5R6_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 5.000e-10
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   10 SVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGR 222
            +V+V  L+W T  + L  H  Q G+V +A V +++    A   GCG+VE+ S  +A+HA+  LNNS LDGR
Sbjct:    5 TVFVGNLSWDTRWQGLKDHMRQAGNVVHAEVFSEASGRSA---GCGIVEYESKADAMHAITALNNSTLDGR 72          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: A0A7S1L844_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1L844_ALECA)

HSP 1 Score: 63.2 bits (152), Expect = 7.470e-10
Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 MSNSVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGRII 228
            ++  ++V  LA+ST  + L  HF QVG VE A VL K       S GCG+V FR+ EEA  AV  LN S LDGR I
Sbjct:   28 ITTRIFVGSLAYSTNWQTLKDHFNQVGEVEFASVLLKPDGS---SKGCGMVNFRTAEEAASAVEQLNESMLDGRRI 100          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: A0A1J5I1L8_9BACT (RRM domain-containing protein n=9 Tax=Microgenomates group TaxID=1794810 RepID=A0A1J5I1L8_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.710e-9
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 MSNSVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGRIIK 231
            M+  +YV GL++ TT+++L   F Q G V +AVV+    +G+  S G G VE  + EEA  A+ M +  ELDGR +K
Sbjct:    1 MAKKLYVGGLSFQTTDDVLNASFAQAGTVVSAVVIKDKFSGQ--SKGFGFVEMSTDEEANAAIAMWDGKELDGRTVK 75          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: S8AJ78_DACHA (RRM domain-containing protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8AJ78_DACHA)

HSP 1 Score: 60.1 bits (144), Expect = 1.860e-9
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    7 NSVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGRIIK 231
            + ++V GLAW T ++ L   F + G VE AVV+     G+  S G G V F +  +A +A+N +NN+E DGR+I+
Sbjct:    2 SKLFVGGLAWHTDDDTLRAKFEEFGPVEEAVVVKDRDTGR--SRGFGFVRFTNENDATNAMNAMNNTEFDGRVIR 74          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: A0A0D2B7G4_9EURO (RRM domain-containing protein n=2 Tax=Exophiala TaxID=5583 RepID=A0A0D2B7G4_9EURO)

HSP 1 Score: 60.1 bits (144), Expect = 1.990e-9
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   13 VYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGRIIK 231
            +++ GLAW TT+E L   F + G VE AVV+ K R+    S G G V F + EEA  A+  +NN+E DGR+I+
Sbjct:    4 LFIGGLAWHTTDETLNEGFQRFGKVEEAVVV-KDRDTNR-SRGFGFVRFATKEEADQALENMNNTEFDGRLIR 74          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: C1MII7_MICPC (RNA binding protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MII7_MICPC)

HSP 1 Score: 61.6 bits (148), Expect = 2.150e-9
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    4 SNSVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGRII 228
            +N +YV  L+W  + + L  HF Q G V +A ++T+   G+  S GCG+VE  + +EA +A+ MLN+++L+GR I
Sbjct:   42 TNRLYVHNLSWRVSWQDLKDHFRQAGEVIHAKIMTEGPGGR--SKGCGIVEMGTVDEAANAIEMLNDTDLNGRNI 114          
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Match: A0A5N6I0N9_9EURO (RRM domain-containing protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A5N6I0N9_9EURO)

HSP 1 Score: 58.9 bits (141), Expect = 2.280e-9
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    7 NSVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGVVEFRSPEEAIHAVNMLNNSELDGRIIK 231
            + ++V GL+W TT+E L   F Q G VE A+V+ K R+    S G G V F +  EA  AV  LNN+E DGR+I+
Sbjct:    2 SKLFVGGLSWHTTDESLREGFSQFGQVEEAIVV-KDRDTNR-SRGFGFVRFTTEAEADAAVQELNNTEFDGRVIR 74          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9870.28689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YKE5_AURAN4.960e-1146.75Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0BFC3_9RHOD2.190e-1043.66Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1F7SG28_9BACT3.230e-1041.56RRM domain-containing protein n=1 Tax=Candidatus S... [more]
A0A7S0G5R6_9RHOD5.000e-1042.25Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S1L844_ALECA7.470e-1048.68Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A1J5I1L8_9BACT1.710e-941.56RRM domain-containing protein n=9 Tax=Microgenomat... [more]
S8AJ78_DACHA1.860e-940.00RRM domain-containing protein n=1 Tax=Dactylellina... [more]
A0A0D2B7G4_9EURO1.990e-945.21RRM domain-containing protein n=2 Tax=Exophiala Ta... [more]
C1MII7_MICPC2.150e-940.00RNA binding protein n=1 Tax=Micromonas pusilla (st... [more]
A0A5N6I0N9_9EURO2.280e-945.33RRM domain-containing protein n=2 Tax=Aspergillus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9870contigD-dudresnayi_contig9870:9822..10052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.6
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog430498.S7ZZ83
EggNOG free text desc.Glycine-rich RNA-binding protein
EggNOG OGs3A0CS@33154,3P3AV@4751,3QVTS@4890,KOG0118@1,KOG0118@2759
COG Functional cat.A
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.7927635-CDS-D-dudresnayi_contig9870:9821..100521622930947.7927635-CDS-D-dudresnayi_contig9870:9821..10052Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9870 9822..10052 +
1690557976.1367345-CDS-D-dudresnayi_contig9870:9821..100521690557976.1367345-CDS-D-dudresnayi_contig9870:9821..10052Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9870 9822..10052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9870.28689.1prot_D-dudresnayi_contig9870.28689.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9870 9822..10052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9870.28689.1

>prot_D-dudresnayi_contig9870.28689.1 ID=prot_D-dudresnayi_contig9870.28689.1|Name=mRNA_D-dudresnayi_contig9870.28689.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=77bp
MSNSVYVSGLAWSTTNEILGTHFMQVGHVENAVVLTKSRNGKAVSLGCGV
VEFRSPEEAIHAVNMLNNSELDGRIIK
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mRNA from alignment at D-dudresnayi_contig9870:9822..10052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9870.28689.1 ID=mRNA_D-dudresnayi_contig9870.28689.1|Name=mRNA_D-dudresnayi_contig9870.28689.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at D-dudresnayi_contig9870:9822..10052+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTAATTCTGTGTATGTATCTGGACTCGCTTGGTCGACAACTAATGA AATCCTTGGTACACATTTTATGCAAGTGGGTCATGTAGAAAATGCTGTAG TATTAACTAAATCTCGCAATGGTAAGGCTGTATCCCTCGGATGTGGTGTT GTTGAATTCCGTAGCCCTGAAGAAGCTATTCATGCTGTGAATATGCTTAA TAACTCTGAACTTGATGGTCGTATAATTAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9870:9822..10052+

>mRNA_D-dudresnayi_contig9870.28689.1 ID=mRNA_D-dudresnayi_contig9870.28689.1|Name=mRNA_D-dudresnayi_contig9870.28689.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at D-dudresnayi_contig9870:9822..10052+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTAATTCTGTGTATGTATCTGGACTCGCTTGGTCGACAACTAATGA
AATCCTTGGTACACATTTTATGCAAGTGGGTCATGTAGAAAATGCTGTAG
TATTAACTAAATCTCGCAATGGTAAGGCTGTATCCCTCGGATGTGGTGTT
GTTGAATTCCGTAGCCCTGAAGAAGCTATTCATGCTGTGAATATGCTTAA
TAACTCTGAACTTGATGGTCGTATAATTAAGATGTCTAATTCTGTGTATG
TATCTGGACTCGCTTGGTCGACAACTAATGAAATCCTTGGTACACATTTT
ATGCAAGTGGGTCATGTAGAAAATGCTGTAGTATTAACTAAATCTCGCAA
TGGTAAGGCTGTATCCCTCGGATGTGGTGTTGTTGAATTCCGTAGCCCTG
AAGAAGCTATTCATGCTGTGAATATGCTTAATAACTCTGAACTTGATGGT
CGTATAATTAAG
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