mRNA_D-dudresnayi_contig9870.28686.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9870.28686.1
Unique NamemRNA_D-dudresnayi_contig9870.28686.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9870.28686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9870contigD-dudresnayi_contig9870:586..1243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size660
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.5981793-CDS-D-dudresnayi_contig9870:585..12421622930947.5981793-CDS-D-dudresnayi_contig9870:585..1242Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9870 586..1242 +
1690557976.0741596-CDS-D-dudresnayi_contig9870:585..12421690557976.0741596-CDS-D-dudresnayi_contig9870:585..1242Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9870 586..1242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9870.28686.1prot_D-dudresnayi_contig9870.28686.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9870 586..1242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9870.28686.1

>prot_D-dudresnayi_contig9870.28686.1 ID=prot_D-dudresnayi_contig9870.28686.1|Name=mRNA_D-dudresnayi_contig9870.28686.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=219bp
PKSSSGSSVNESEHVTKVNKRVEVEDDEAAFYNSQYPDMSNVSLSSDDND
SEPNSPIKQTKHANEGFLGQIKNTSETAGTAIIGGLKATTNLLNPMNLVK
PSDGGEAEREKNNKKTQDEFDRIYIDESVEEEEVERPKPKPSFLETIKTK
TGLHHPAPSDTERSQQSRQQQPPRPPDHYTDNQHKEPHKESFLDQIKSRT
GLQQNKDKPREEDIARNSA
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mRNA from alignment at D-dudresnayi_contig9870:586..1243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9870.28686.1 ID=mRNA_D-dudresnayi_contig9870.28686.1|Name=mRNA_D-dudresnayi_contig9870.28686.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=658bp|location=Sequence derived from alignment at D-dudresnayi_contig9870:586..1243+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCAAAGAGTTCATCTGGTTCATCTGTGAATGAATCTGAACATGTAACAAA
AGTAAACAAACGTGTTGAAGTAGAAGATGATGAAGCTGCATTTTACAACT
CTCAATATCCGGACATGTCAAATGTTAGTTTATCATCGGATGATAACGAT
AGTGAGCCTAATTCACCTATAAAGCAAACAAAACATGCTAATGAAGGATT
TTTAGGTCAAATTAAGAATACTTCAGAAACTGCCGGGACAGCGATTATTG
GTGGATTAAAAGCAACAACTAATCTTCTTAATCCAATGAATCTCGTCAAA
CCATCTGATGGTGGTGAAGCTGAACGTGAGAAAAATAATAAGAAAACACA
AGATGAATTTGATCGTATTTATATTGATGAAAGTGTAGAAGAAGAGGAAG
TAGAAAGGCCGAAACCGAAACCTTCCTTTTTAGAGACGATTAAAACAAAA
ACTGGTCTTCATCATCCTGCTCCTTCTGATACAGAACGTTCCCAACAAAG
TCGTCAACAACAACCACCTAGACCACCTGATCATTACACTGATAATCAAC
ATAAAGAACCACATAAAGAGAGTTTTCTCGATCAAATCAAATCTCGTACA
GGTTTACAGCAGAATAAGGACAAGCCTAGAGAGGAAGATATTGCTCGTAA
TAGTGCAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9870:586..1243+

>mRNA_D-dudresnayi_contig9870.28686.1 ID=mRNA_D-dudresnayi_contig9870.28686.1|Name=mRNA_D-dudresnayi_contig9870.28686.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at D-dudresnayi_contig9870:586..1243+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCAAAGAGTTCATCTGGTTCATCTGTGAATGAATCTGAACATGTAACAAA
AGTAAACAAACGTGTTGAAGTAGAAGATGATGAAGCTGCATTTTACAACT
CTCAATATCCGGACATGTCAAATGTTAGTTTATCATCGGATGATAACGAT
AGTGAGCCTAATTCACCTATAAAGCAAACAAAACATGCTAATGAAGGATT
TTTAGGTCAAATTAAGAATACTTCAGAAACTGCCGGGACAGCGATTATTG
GTGGATTAAAAGCAACAACTAATCTTCTTAATCCAATGAATCTCGTCAAA
CCATCTGATGGTGGTGAAGCTGAACGTGAGAAAAATAATAAGAAAACACA
AGATGAATTTGATCGTATTTATATTGATGAAAGTGTAGAAGAAGAGGAAG
TAGAAAGGCCGAAACCGAAACCTTCCTTTTTAGAGACGATTAAAACAAAA
ACTGGTCTTCATCATCCTGCTCCTTCTGATACAGAACGTTCCCAACAAAG
TCGTCAACAACAACCACCTAGACCACCTGATCATTACACTGATAATCAAC
ATAAAGAACCACATAAAGAGAGTTTTCTCGATCAAATCAAATCTCGTACA
GGTTTACAGCAGAATAAGGACAAGCCTAGAGAGGAAGATATTGCTCGTAA
TAGTGCACCAAAGAGTTCATCTGGTTCATCTGTGAATGAATCTGAACATG
TAACAAAAGTAAACAAACGTGTTGAAGTAGAAGATGATGAAGCTGCATTT
TACAACTCTCAATATCCGGACATGTCAAATGTTAGTTTATCATCGGATGA
TAACGATAGTGAGCCTAATTCACCTATAAAGCAAACAAAACATGCTAATG
AAGGATTTTTAGGTCAAATTAAGAATACTTCAGAAACTGCCGGGACAGCG
ATTATTGGTGGATTAAAAGCAACAACTAATCTTCTTAATCCAATGAATCT
CGTCAAACCATCTGATGGTGGTGAAGCTGAACGTGAGAAAAATAATAAGA
AAACACAAGATGAATTTGATCGTATTTATATTGATGAAAGTGTAGAAGAA
GAGGAAGTAGAAAGGCCGAAACCGAAACCTTCCTTTTTAGAGACGATTAA
AACAAAAACTGGTCTTCATCATCCTGCTCCTTCTGATACAGAACGTTCCC
AACAAAGTCGTCAACAACAACCACCTAGACCACCTGATCATTACACTGAT
AATCAACATAAAGAACCACATAAAGAGAGTTTTCTCGATCAAATCAAATC
TCGTACAGGTTTACAGCAGAATAAGGACAAGCCTAGAGAGGAAGATATTG
CTCGTAATAGTGCA
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