mRNA_D-dudresnayi_contig987.28685.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig987.28685.1
Unique NamemRNA_D-dudresnayi_contig987.28685.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig987.28685.1 vs. uniprot
Match: A0A6H5JHZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.500e-31
Identity = 67/99 (67.68%), Postives = 80/99 (80.81%), Query Frame = 3 
Query:    3 TRAPTLTSMIASHAGEKEGEDYLAGASAVLPPGGKVPELFTHGGEIVLDEEAIRVGLQTGVEEKQEALSVTEQSILASIQELQRQLWEHKNKEEQRDEN 299
            TRAPTLTS+IA+HAGE+E  D+LA A AV+PPGGKVPE+FTH  E+V ++E     +QTG+E    AL V EQ ILA+IQELQRQLWEHKNKE+QRDEN
Sbjct:  151 TRAPTLTSVIANHAGEREAADFLASAKAVMPPGGKVPEVFTHSPEVVGEKE-----VQTGIE----ALDVAEQEILANIQELQRQLWEHKNKEDQRDEN 240
[Close]
BLAST of mRNA_D-dudresnayi_contig987.28685.1 vs. uniprot
Match: D8LRB5_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-15
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 3 
Query:    3 TRAPTLTSMIASHAGEKEGEDYLAGASAVLPPGGKVPELFTHGGEIVLDEEAIRVGLQTGVEEKQEALSVTEQ 221
            TRAPTLTS+IA HAGE+E  D+LA A AV+PPGGKVPE+FTH  E+V ++E     +QTG+E    AL V EQ
Sbjct:   22 TRAPTLTSVIAKHAGEREATDFLASAKAVMPPGGKVPEVFTHSPEVVGEKE-----VQTGIE----ALDVAEQ 85
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig987.28685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHZ1_9PHAE1.500e-3167.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB5_ECTSI1.480e-1560.27Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig987contigD-dudresnayi_contig987:28614..31243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size299
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig987.28685.1prot_D-dudresnayi_contig987.28685.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig987 28640..31243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.4927897-UTR-D-dudresnayi_contig987:28613..286391622930947.4927897-UTR-D-dudresnayi_contig987:28613..28639Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig987 28614..28639 +
1690557976.0257666-UTR-D-dudresnayi_contig987:28613..286391690557976.0257666-UTR-D-dudresnayi_contig987:28613..28639Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig987 28614..28639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.5142343-CDS-D-dudresnayi_contig987:28639..287431622930947.5142343-CDS-D-dudresnayi_contig987:28639..28743Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig987 28640..28743 +
1690557976.0339484-CDS-D-dudresnayi_contig987:28639..287431690557976.0339484-CDS-D-dudresnayi_contig987:28639..28743Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig987 28640..28743 +
1622930947.534625-CDS-D-dudresnayi_contig987:29313..294041622930947.534625-CDS-D-dudresnayi_contig987:29313..29404Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig987 29314..29404 +
1690557976.0497384-CDS-D-dudresnayi_contig987:29313..294041690557976.0497384-CDS-D-dudresnayi_contig987:29313..29404Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig987 29314..29404 +
1622930947.555005-CDS-D-dudresnayi_contig987:31165..312431622930947.555005-CDS-D-dudresnayi_contig987:31165..31243Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig987 31166..31243 +
1690557976.0631602-CDS-D-dudresnayi_contig987:31165..312431690557976.0631602-CDS-D-dudresnayi_contig987:31165..31243Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig987 31166..31243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig987.28685.1

>prot_D-dudresnayi_contig987.28685.1 ID=prot_D-dudresnayi_contig987.28685.1|Name=mRNA_D-dudresnayi_contig987.28685.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=91bp
MIASHAGEKEGEDYLAGASAVLPPGGKVPELFTHGGEIVLDEEAIRVGLQ
TGVEEKQEALSVTEQSILASIQELQRQLWEHKNKEEQRDEN
back to top

mRNA from alignment at D-dudresnayi_contig987:28614..31243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig987.28685.1 ID=mRNA_D-dudresnayi_contig987.28685.1|Name=mRNA_D-dudresnayi_contig987.28685.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2630bp|location=Sequence derived from alignment at D-dudresnayi_contig987:28614..31243+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACACTCGCGCGCCGACTCTGACGAGCATGATCGCGAGCCACGCGGGGGAG
AAGGAAGGAGAGGATTACTTGGCCGGGGCAAGCGCGGTGTTGCCTCCTGG
GGGCAAGGTGCCTGAACTGTTCACCCACGGGTAGGTTTGGGGGTGTGGTT
GGTTCGCTTTTCTTTCCTTTTTTGTTTTATTTTTTGGGTCGCGAACTTCT
CATTCATTTTCACGCCTTGCGTTTGTTCAAAGCGCGTAGTTACGTTAAAG
AGCCGTCCGGTGTCGAAGGCCTGCGCTGTTTCGTCGGGCGTGGTGCGGGG
TGGGATTCCGGTGTACGGTATGGATTTTGTTTGTTTTGTGTCGCCCGTTG
TTGTTTTGTGTCAGTTGACAGATGTGTAGTGTGGTATGGAAAGAAGTAAG
GATTTCGATGCCTGTGGCAAACGAACGAGCTGGGGCTACAAATGTTTTTG
ATACCGATCACTTCACGAACACCCTCCTGTCCTTGAGTCGTTGGGTGTAC
TGTGAGGGCGAGATGCATTGAAATCGTCTGTACGGTCGCACTTGTAGTCG
GTGTTCACTAGAGTACCGCTTTAGTCGCGCAACCGCTAAGGCCCGCCGCT
TCTGTTGTTGGCCGAGCTAAGGCACGTGGACCCCCCCCCCCCCCCCCCCC
ACCGACCTGCCACGCAACCTGCTGCCGTCCCCTTGGATGCGGTGTGACAG
TGGAGAGATCGTGCTGGACGAAGAGGCAATCCGGGTAGGCCTGCAGACGG
GTGTAGAGGAGAAGCAGGAAGCTCTGAGCGTCACAGAACAGGTAAATTTA
TCGGTTTTGGCGCCCCTTCCAAGCTTGGCATGCCCCGCGAGGCATCCTTT
TTTTCTTAGTAGTGGGAGGGACCGACAAAGGCACTGCCTGGCTGTTGTGT
GCCTTAGGTTTTATAGTTTATGGCGAAGGTGTGCATGCTTCGTGCGGGCC
ATTGGAAGGCGTGCACGAGGCAAATTATTTGTTGAAAAGAGCGTTGTTAT
CTACAGGGCGTGCAACGGTAGGGTGAATTTTAGTTTTTAGCAGCATTTTT
GACCGTAGTTTGTCGGCATCTGGTTTTCAGTCAAGCAGAGGCAGATGTAC
CCAAGATGTGGGCCTACTTTATACAGGAATCTGCCGACTAGCTCACGTAG
CAAAATATGTGTATCAGTTGTATAGTCGGGGTAGGGTGATTTTGACGACC
TCAGGCTGGGTCTGGTTCACCTAGGCCGAGTGGCTGGCATAGACGGTTAG
AGTTAGGATTACTGTAAGAAGTAGGGCCGTTCTTGGTGAAGAGAATGCTT
GCTCGAAACATGAAATATCGGAGAAAATAAATTCCTACAAATATTGGAAC
ACTTTCTGTAAGTAGTAACTCACAATATAGTAACAAAGGTGGCGTCTTCA
TCACAAGTTCCGCTTTCGCAAAGACACAAATCGATGAAGTTTGCAAGCAG
TCGTGTAGCGCTTCCAAGGCGCTGAGCTAACGTGTAGCAGGAGTCTCACC
TAGCGAGAAGACTGCTTTAGTACATATACAACTCTGCTGAGAGCCCTAAT
GCTCGACAAGCTTTATCAGAGCCATGATAGCAGTTCTATCTAGTTATATC
ATGGCTCCGACAAAAAATTTCGGGCATTGCGGCAGACAGAACAACTCTCG
ACTAGAAGCAGGCTCCACGCAGCATGCGCTGGTGTCTGAGAGAGCGTAGT
GTTGCTTGTGGCTCTCTTATGGGATCCTTTGAAAAGACTCGACACTTCGA
TCATGTCGCCAGACTGTACGTTTAGTGTAGGGTGGATCTCCAGCGGCGGC
GCACACAAGCTTTGCGCGCTTGGCACATGTTGCCGCCGGATGCTTTGTTG
CGCCGAGGTGAAGTTTCGTTATTCCTATCTCGCCGTGGCAGGAAAACATT
ACTATAGTAGTCCACATGCTGCGCGTTGAGCCTTATATCGCACCGCTTGT
TCTTGATCATTGTCGGCGTCAATAGGTGCCCCATCACAAAACTTTCATTC
ACAAATGATTTCTATCCTGTGGTGGTTTTTTATTACTTGATTTTTCTTGT
GGAGCCAGCAAGAAAGGCCCGCCATTTTTGTTGTTGTTTTAGGAAGCACA
GGAATTGGCTGTTCAATAGCCGACTTTTGAGAAATACAAAGAGATGGACG
GAGTAAGGTACTGTGACACACGGGTTTCGAACCTAACTACTAAAAGTCGA
CAGACGTGGGTAACCGAATTTGTTTTTCCATTGTCTACAGTAGTAGCAGC
AGTAGAGGGGCACGCGTGTAACTGCAGGCGGATGTGGATTCTGGTGTGTA
CGCGATGCCTGGAGGAGTGTCGAGTGTCCATGAAACGCGTCCTTATGTTG
TAACACCTTGACAAGGACGGCCATATAACGCACCCTGTTAAGCGCAACGT
GTAACGAATGAGGCGTTTACGCAACACCGAAGCGCTGCCTGAGCACTCTT
CCCTTCTACTTCCCTCCCTCTCCGTCAATTACACCCGTTTCCTTTGCTTT
TGGTGGCCGTGCGGTATAATATGTGGTTTGGTGTTTTGGCCTTTCGGGAC
AGTCGATTTTGGCGAGTATCCAGGAGCTGCAGCGTCAGCTGTGGGAGCAC
AAGAACAAGGAAGAGCAGAGGGACGAGAAC
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig987:28614..31243+

>mRNA_D-dudresnayi_contig987.28685.1 ID=mRNA_D-dudresnayi_contig987.28685.1|Name=mRNA_D-dudresnayi_contig987.28685.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at D-dudresnayi_contig987:28614..31243+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATCGCGAGCCACGCGGGGGAGAAGGAAGGAGAGGATTACTTGGCCGG
GGCAAGCGCGGTGTTGCCTCCTGGGGGCAAGGTGCCTGAACTGTTCACCC
ACGGATGATCGCGAGCCACGCGGGGGAGAAGGAAGGAGAGGATTACTTGG
CCGGGGCAAGCGCGGTGTTGCCTCCTGGGGGCAAGGTGCCTGAACTGTTC
ACCCACGGTGGAGAGATCGTGCTGGACGAAGAGGCAATCCGGGTAGGCCT
GCAGACGGGTGTAGAGGAGAAGCAGGAAGCTCTGAGCGTCACAGAACAGT
GGAGAGATCGTGCTGGACGAAGAGGCAATCCGGGTAGGCCTGCAGACGGG
TGTAGAGGAGAAGCAGGAAGCTCTGAGCGTCACAGAACAGTCGATTTTGG
CGAGTATCCAGGAGCTGCAGCGTCAGCTGTGGGAGCACAAGAACAAGGAA
GAGCAGAGGGACGAGAACTCGATTTTGGCGAGTATCCAGGAGCTGCAGCG
TCAGCTGTGGGAGCACAAGAACAAGGAAGAGCAGAGGGACGAGAAC
back to top