mRNA_D-dudresnayi_contig9868.28679.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9868.28679.1
Unique NamemRNA_D-dudresnayi_contig9868.28679.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9868.28679.1 vs. uniprot
Match: A0A6H5L508_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L508_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-5
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:  222 MSLYAWGKNTHGQLGVKQDPWPSPGARDAKYRTQQ---QQQQSTHGAKLPRLGTKE-GQGHKPV 401
            MSLYAWGKN +GQLGVKQ+P  S  +R    + QQ   QQ Q  +  + P+LG++  GQG +PV
Sbjct:    1 MSLYAWGKNNYGQLGVKQEPARSNPSRHQPRQGQQEEEQQVQPVNARRPPKLGSERAGQGQEPV 64
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9868.28679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L508_9PHAE1.310e-550.00BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9868contigD-dudresnayi_contig9868:3147..4019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9868.28679.1prot_D-dudresnayi_contig9868.28679.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9868 3147..3798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.5106199-CDS-D-dudresnayi_contig9868:3146..32871622930946.5106199-CDS-D-dudresnayi_contig9868:3146..3287Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9868 3147..3287 -
1690557975.64589-CDS-D-dudresnayi_contig9868:3146..32871690557975.64589-CDS-D-dudresnayi_contig9868:3146..3287Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9868 3147..3287 -
1622930946.5316749-CDS-D-dudresnayi_contig9868:3759..37981622930946.5316749-CDS-D-dudresnayi_contig9868:3759..3798Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9868 3760..3798 -
1690557975.6554954-CDS-D-dudresnayi_contig9868:3759..37981690557975.6554954-CDS-D-dudresnayi_contig9868:3759..3798Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9868 3760..3798 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.5509558-UTR-D-dudresnayi_contig9868:3798..40191622930946.5509558-UTR-D-dudresnayi_contig9868:3798..4019Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9868 3799..4019 -
1690557975.6655467-UTR-D-dudresnayi_contig9868:3798..40191690557975.6655467-UTR-D-dudresnayi_contig9868:3798..4019Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9868 3799..4019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9868.28679.1

>prot_D-dudresnayi_contig9868.28679.1 ID=prot_D-dudresnayi_contig9868.28679.1|Name=mRNA_D-dudresnayi_contig9868.28679.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=60bp
MSLYAWGKNTHGQLGVKQDPWPSPGARDAKYRTQQQQQQSTHGAKLPRLG
TKEGQGHKPV
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mRNA from alignment at D-dudresnayi_contig9868:3147..4019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9868.28679.1 ID=mRNA_D-dudresnayi_contig9868.28679.1|Name=mRNA_D-dudresnayi_contig9868.28679.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at D-dudresnayi_contig9868:3147..4019- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGAGGACTAGCGGAGTTCTTGTAGCTTCGGTGGACCCCTCAACAGCAGC
GGCATTACTGGCAGGACGACAAGTATTCTTCTAGTTCTGTTGCCTCATTC
TGCTGCTGGTCATCGTCTGTCAATCAGGAGGCGCCTCCTTGAACCGGTTC
TTCACACTTCCTATCGTGTTTCGACGACCTTTCTTTGCTCTTGTCGCAAC
GCGTGCAGCCCACGAGCGACGATGAGTCTCTACGCTTGGGGTAAAAACAC
CCACGGTCAGGTGCGACCTAATGGATAGGACTTACTTAGACCGATATTGT
ACTATCAATATCATAGAGGTATGATACTACTACTGTTATACTGTTATAGA
TCCAGGTTTAGACTGGCTTGCCCTTGCGCTTGCGCTTGGGCGCGTCTGCG
AACACTTTCCTTATGATACTCGTGTCATACAAGTACTCGTAGTGTGATGT
ATAATATCGACAGTACATCACGTCAGTCCCGTTGAGCAGTGAGGCAACTC
TATGATATCGATTTGTCTTATGCTGTGTGGTGTGCAGTGCTACAAGTACG
TGCATAAATCAAACTGTACATAGGTTACTGATGCTCCAGCACCACCGTGT
TGTGTTACTGTTGTGTCGTTTCCTTTGTCCCCTGTGACTTTTGACTGTCA
TGCATTGATTGTCTTGCGACTTTTTAATTTTGGTCTGTTTTTTCATATCA
TCATATTCGTCCCCGTCATGTCATGTTGTAAGCTCGGCGTGAAGCAAGAT
CCCTGGCCGTCGCCTGGCGCGAGAGACGCCAAGTACCGCACCCAGCAACA
ACAGCAACAATCAACCCACGGAGCCAAGCTGCCAAGGCTTGGCACTAAGG
AAGGGCAAGGCCACAAGCCGGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9868:3147..4019-

>mRNA_D-dudresnayi_contig9868.28679.1 ID=mRNA_D-dudresnayi_contig9868.28679.1|Name=mRNA_D-dudresnayi_contig9868.28679.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at D-dudresnayi_contig9868:3147..4019- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGTCTCTACGCTTGGGGTAAAAACACCCACGGTCAGATGAGTCTCTA
CGCTTGGGGTAAAAACACCCACGGTCAGCTCGGCGTGAAGCAAGATCCCT
GGCCGTCGCCTGGCGCGAGAGACGCCAAGTACCGCACCCAGCAACAACAG
CAACAATCAACCCACGGAGCCAAGCTGCCAAGGCTTGGCACTAAGGAAGG
GCAAGGCCACAAGCCGGTGCTCGGCGTGAAGCAAGATCCCTGGCCGTCGC
CTGGCGCGAGAGACGCCAAGTACCGCACCCAGCAACAACAGCAACAATCA
ACCCACGGAGCCAAGCTGCCAAGGCTTGGCACTAAGGAAGGGCAAGGCCA
CAAGCCGGTG
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