mRNA_D-dudresnayi_contig9865.28677.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9865.28677.1
Unique NamemRNA_D-dudresnayi_contig9865.28677.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5JQJ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.750e-15
Identity = 33/104 (31.73%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:    4 RMYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVELELV 315
            R+ +     EAW+ I  W +P  + E+ + + + E + MHP EDP+++ ARVD V++I+  + + + E  ++  I R L   Y+IE  +I++   I R ++E V
Sbjct:   13 RLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHKYDIERESILADPTISRAKVENV 116
[Close]
BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.600e-15
Identity = 33/104 (31.73%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    4 RMYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVELELV 315
            R+ +     EAW+ I  W +P  + E+ + + + E + MHP EDP+++ ARVD V++I+  + + + E  ++  I R L  +Y+IE ++I+    I R ++E V
Sbjct:   13 RLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILVDPTISRAKVENV 116
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BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5JQ49_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.770e-14
Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    4 RMYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVELELV 315
            R+ +     EAW+ I  W +P  + E+ + + + E + MHP EDP+++ ARVD V++I+  + + + E  ++  I R L  +Y+IE ++I++   I R ++E V
Sbjct:   13 RLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENV 116
[Close]
BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5JS28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.990e-14
Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    4 RMYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVELELV 315
            R+ +     EAW+ I  W +P  + E+ + + + E + MHP EDP+++ ARVD V++I+  + + + E  ++  I R L  +Y+IE ++I++   I R ++E V
Sbjct:   13 RLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENV 116
[Close]
BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.220e-14
Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    4 RMYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVELELV 315
            R+ +     EAW+ I  W +P  + E+ + + + E + MHP EDP+++ ARVD V++I+  + + + E  ++  I R L  +Y+IE ++I++   I R ++E V
Sbjct:  145 RLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENV 248
[Close]
BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.230e-14
Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    4 RMYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVELELV 315
            R+ +     EAW+ I  W +P  + E+ + + + E + MHP EDP+++ ARVD V++I+  + + + E  ++  I R L  +Y+IE ++I++   I R ++E V
Sbjct:  200 RLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENV 303
[Close]
BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.250e-14
Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    4 RMYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVELELV 315
            R+ +     EAW+ I  W +P  + E+ + + + E + MHP EDP+++ ARVD V++I+  + + + E  ++  I R L  +Y+IE ++I++   I R ++E V
Sbjct:  145 RLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENV 248
[Close]
BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.270e-14
Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    4 RMYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVELELV 315
            R+ +     EAW+ I  W +P  + E+ + + + E + MHP EDP+++ ARVD V++I+  + + + E  ++  I R L  +Y+IE ++I++   I R ++E V
Sbjct:  145 RLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENV 248
[Close]
BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.390e-11
Identity = 28/93 (30.11%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    7 MYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLARVDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRS 285
            +++     EAW AI  W +P  + E+ +   + E V M P E+P+++ ARVD +V+ +  + + + E ++++ I R L+ DY++E +  +S S
Sbjct:  464 LFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVERKTTLSDS 556
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9865.28677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQJ2_9PHAE2.750e-1531.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K4K8_9PHAE8.600e-1531.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ49_9PHAE1.770e-1431.73Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS28_9PHAE1.990e-1431.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP6_9PHAE2.220e-1431.73CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE2.230e-1431.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A7_9PHAE2.250e-1431.73CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE2.270e-1431.73CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L089_9PHAE5.390e-1130.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9865contigD-dudresnayi_contig9865:27..344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.3759851-CDS-D-dudresnayi_contig9865:26..3381622930946.3759851-CDS-D-dudresnayi_contig9865:26..338Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9865 27..338 -
1690557975.6093144-CDS-D-dudresnayi_contig9865:26..3381690557975.6093144-CDS-D-dudresnayi_contig9865:26..338Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9865 27..338 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.39063-UTR-D-dudresnayi_contig9865:338..3441622930946.39063-UTR-D-dudresnayi_contig9865:338..344Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9865 339..344 -
1690557975.6169949-UTR-D-dudresnayi_contig9865:338..3441690557975.6169949-UTR-D-dudresnayi_contig9865:338..344Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9865 339..344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9865.28677.1prot_D-dudresnayi_contig9865.28677.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9865 27..338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9865.28677.1

>prot_D-dudresnayi_contig9865.28677.1 ID=prot_D-dudresnayi_contig9865.28677.1|Name=mRNA_D-dudresnayi_contig9865.28677.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=104bp
MYSLGSPSEAWAAIEVWFVPKGNTERDIWLNKFENVRMHPNEDPQIYLAR
VDEVVDILACLEVFRDEAEVIRAINRGLTKDYEIESRAIISRSNICRVEL
ELVL
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mRNA from alignment at D-dudresnayi_contig9865:27..344-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9865.28677.1 ID=mRNA_D-dudresnayi_contig9865.28677.1|Name=mRNA_D-dudresnayi_contig9865.28677.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at D-dudresnayi_contig9865:27..344- (Desmarestia dudresnayi DdudBR16 monoicous)
AGCAGAATGTACAGCTTGGGGTCACCTAGCGAAGCGTGGGCGGCAATAGA
AGTTTGGTTTGTACCGAAAGGTAACACGGAACGCGACATATGGCTTAACA
AGTTCGAGAACGTCCGCATGCACCCCAACGAGGACCCCCAAATCTATCTC
GCTAGAGTTGACGAGGTTGTCGACATACTCGCCTGCCTCGAAGTGTTCCG
CGACGAGGCTGAAGTGATTCGTGCGATAAACCGTGGGCTGACTAAAGACT
ACGAAATAGAGAGCCGGGCGATCATCAGTCGCTCTAATATTTGCCGCGTC
GAACTTGAGTTGGTCTTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9865:27..344-

>mRNA_D-dudresnayi_contig9865.28677.1 ID=mRNA_D-dudresnayi_contig9865.28677.1|Name=mRNA_D-dudresnayi_contig9865.28677.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at D-dudresnayi_contig9865:27..344- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTACAGCTTGGGGTCACCTAGCGAAGCGTGGGCGGCAATAGAAGTTTG
GTTTGTACCGAAAGGTAACACGGAACGCGACATATGGCTTAACAAGTTCG
AGAACGTCCGCATGCACCCCAACGAGGACCCCCAAATCTATCTCGCTAGA
GTTGACGAGGTTGTCGACATACTCGCCTGCCTCGAAGTGTTCCGCGACGA
GGCTGAAGTGATTCGTGCGATAAACCGTGGGCTGACTAAAGACTACGAAA
TAGAGAGCCGGGCGATCATCAGTCGCTCTAATATTTGCCGCGTCGAACTT
GAGTTGGTCTTGATGTACAGCTTGGGGTCACCTAGCGAAGCGTGGGCGGC
AATAGAAGTTTGGTTTGTACCGAAAGGTAACACGGAACGCGACATATGGC
TTAACAAGTTCGAGAACGTCCGCATGCACCCCAACGAGGACCCCCAAATC
TATCTCGCTAGAGTTGACGAGGTTGTCGACATACTCGCCTGCCTCGAAGT
GTTCCGCGACGAGGCTGAAGTGATTCGTGCGATAAACCGTGGGCTGACTA
AAGACTACGAAATAGAGAGCCGGGCGATCATCAGTCGCTCTAATATTTGC
CGCGTCGAACTTGAGTTGGTCTTG
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