mRNA_D-dudresnayi_contig9862.28675.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9862.28675.1
Unique NamemRNA_D-dudresnayi_contig9862.28675.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9862.28675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9862contigD-dudresnayi_contig9862:10252..11082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size831
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9862.28675.1prot_D-dudresnayi_contig9862.28675.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9862 10355..10993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.7145243-UTR-D-dudresnayi_contig9862:10251..103541622930945.7145243-UTR-D-dudresnayi_contig9862:10251..10354Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9862 10252..10354 +
1690557975.397387-UTR-D-dudresnayi_contig9862:10251..103541690557975.397387-UTR-D-dudresnayi_contig9862:10251..10354Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9862 10252..10354 +
1622930945.763885-UTR-D-dudresnayi_contig9862:10993..110821622930945.763885-UTR-D-dudresnayi_contig9862:10993..11082Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9862 10994..11082 +
1690557975.4241807-UTR-D-dudresnayi_contig9862:10993..110821690557975.4241807-UTR-D-dudresnayi_contig9862:10993..11082Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9862 10994..11082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.73458-CDS-D-dudresnayi_contig9862:10354..109931622930945.73458-CDS-D-dudresnayi_contig9862:10354..10993Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9862 10355..10993 +
1690557975.4080274-CDS-D-dudresnayi_contig9862:10354..109931690557975.4080274-CDS-D-dudresnayi_contig9862:10354..10993Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9862 10355..10993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9862.28675.1

>prot_D-dudresnayi_contig9862.28675.1 ID=prot_D-dudresnayi_contig9862.28675.1|Name=mRNA_D-dudresnayi_contig9862.28675.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=213bp
MSGRLEETTMQNENQSPNLTERGKETINYATEKGSEWTDKAMEKGKETIH
DTRETVADAVRPSDKEEKSPDIVDKGMETIDIAAETGKEWVNTATEKGKE
VLHDTRETVAKTVRPGDQKDEEESPDLVERGNQMMNDATEKGKEVIHDTR
ETVADVVEPEDTKRAREEANKSMLEKGRDYANSAAEAISNMLSTDQKEGD
KKHNHKLDNDKQ*
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mRNA from alignment at D-dudresnayi_contig9862:10252..11082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9862.28675.1 ID=mRNA_D-dudresnayi_contig9862.28675.1|Name=mRNA_D-dudresnayi_contig9862.28675.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=831bp|location=Sequence derived from alignment at D-dudresnayi_contig9862:10252..11082+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAATATTGTGTTGTTTATTATGTTATCAAACTTTCTCATTATTAATCAA
GAACAACTATTTGATTGAATTAACAAACTTTACTAACAACAAACAATAAC
AATATGAGCGGAAGACTTGAAGAAACCACTATGCAGAACGAAAACCAATC
ACCTAACCTCACCGAAAGAGGAAAGGAAACAATCAATTACGCTACTGAGA
AAGGGTCAGAGTGGACCGATAAGGCAATGGAGAAAGGAAAGGAAACCATC
CACGACACCAGAGAGACTGTGGCTGATGCTGTGAGACCAAGTGACAAAGA
GGAAAAATCTCCTGATATTGTAGACAAGGGGATGGAGACGATCGATATTG
CAGCCGAAACCGGAAAAGAATGGGTTAACACAGCTACTGAGAAGGGAAAG
GAGGTTCTACATGACACCAGAGAAACAGTTGCTAAGACCGTAAGACCTGG
CGATCAGAAGGATGAAGAAGAGTCTCCTGATCTCGTAGAGAGAGGAAATC
AGATGATGAATGATGCCACAGAGAAGGGAAAAGAGGTTATTCATGACACC
AGAGAGACGGTAGCTGATGTTGTGGAGCCTGAAGACACCAAGCGTGCAAG
AGAGGAGGCCAACAAGAGCATGTTAGAGAAAGGCAGAGATTACGCCAACT
CTGCCGCTGAGGCTATCTCAAACATGTTAAGTACTGACCAGAAGGAGGGT
GACAAGAAACACAATCATAAGCTAGACAATGATAAGCAGTAAATAAGAGT
GTATACACTGTTGCTCATAAGAGTTGCTAGAAGCATGCATTGTTCCTGTT
ATTATATGTAAATAAGAAAAGCGCAATATAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9862:10252..11082+

>mRNA_D-dudresnayi_contig9862.28675.1 ID=mRNA_D-dudresnayi_contig9862.28675.1|Name=mRNA_D-dudresnayi_contig9862.28675.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at D-dudresnayi_contig9862:10252..11082+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGCGGAAGACTTGAAGAAACCACTATGCAGAACGAAAACCAATCACC
TAACCTCACCGAAAGAGGAAAGGAAACAATCAATTACGCTACTGAGAAAG
GGTCAGAGTGGACCGATAAGGCAATGGAGAAAGGAAAGGAAACCATCCAC
GACACCAGAGAGACTGTGGCTGATGCTGTGAGACCAAGTGACAAAGAGGA
AAAATCTCCTGATATTGTAGACAAGGGGATGGAGACGATCGATATTGCAG
CCGAAACCGGAAAAGAATGGGTTAACACAGCTACTGAGAAGGGAAAGGAG
GTTCTACATGACACCAGAGAAACAGTTGCTAAGACCGTAAGACCTGGCGA
TCAGAAGGATGAAGAAGAGTCTCCTGATCTCGTAGAGAGAGGAAATCAGA
TGATGAATGATGCCACAGAGAAGGGAAAAGAGGTTATTCATGACACCAGA
GAGACGGTAGCTGATGTTGTGGAGCCTGAAGACACCAAGCGTGCAAGAGA
GGAGGCCAACAAGAGCATGTTAGAGAAAGGCAGAGATTACGCCAACTCTG
CCGCTGAGGCTATCTCAAACATGTTAAGTACTGACCAGAAGGAGGGTGAC
AAGAAACACAATCATAAGCTAGACAATGATAAGCAGTAAATGAGCGGAAG
ACTTGAAGAAACCACTATGCAGAACGAAAACCAATCACCTAACCTCACCG
AAAGAGGAAAGGAAACAATCAATTACGCTACTGAGAAAGGGTCAGAGTGG
ACCGATAAGGCAATGGAGAAAGGAAAGGAAACCATCCACGACACCAGAGA
GACTGTGGCTGATGCTGTGAGACCAAGTGACAAAGAGGAAAAATCTCCTG
ATATTGTAGACAAGGGGATGGAGACGATCGATATTGCAGCCGAAACCGGA
AAAGAATGGGTTAACACAGCTACTGAGAAGGGAAAGGAGGTTCTACATGA
CACCAGAGAAACAGTTGCTAAGACCGTAAGACCTGGCGATCAGAAGGATG
AAGAAGAGTCTCCTGATCTCGTAGAGAGAGGAAATCAGATGATGAATGAT
GCCACAGAGAAGGGAAAAGAGGTTATTCATGACACCAGAGAGACGGTAGC
TGATGTTGTGGAGCCTGAAGACACCAAGCGTGCAAGAGAGGAGGCCAACA
AGAGCATGTTAGAGAAAGGCAGAGATTACGCCAACTCTGCCGCTGAGGCT
ATCTCAAACATGTTAAGTACTGACCAGAAGGAGGGTGACAAGAAACACAA
TCATAAGCTAGACAATGATAAGCAGTAA
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