mRNA_D-dudresnayi_contig9860.28671.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9860.28671.1
Unique NamemRNA_D-dudresnayi_contig9860.28671.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig9860.28671.1 vs. uniprot
Match: A0A6H5JQG4_9PHAE (GH81 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG4_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 5.210e-48
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 2 
Query:    2 CPHMDRPRDTWPTSAWGVLANASTDLHTSLPTNSWWENIVLGSPTQEVSANNLAVIPYTFDVAGDIPGLRIHFPKVYATDLIVQTLFDWRH 274
            CPHMDRP DTWPTSAWG LANAS DLHTSLPTN+WWENIVLG P+QE  +NN+ VIPYTFDVAGD  GLR+HFP+V A+DLIVQT FDWRH
Sbjct:   14 CPHMDRPEDTWPTSAWGALANASVDLHTSLPTNAWWENIVLGFPSQETRSNNIVVIPYTFDVAGDTAGLRVHFPQVVASDLIVQTTFDWRH 104
[Close]
BLAST of mRNA_D-dudresnayi_contig9860.28671.1 vs. uniprot
Match: D7FR89_ECTSI (Endo-1,3-beta-glucanase, N-terminal, family GH81 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR89_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 8.330e-45
Identity = 69/88 (78.41%), Postives = 76/88 (86.36%), Query Frame = 2 
Query:   11 MDRPRDTWPTSAWGVLANASTDLHTSLPTNSWWENIVLGSPTQEVSANNLAVIPYTFDVAGDIPGLRIHFPKVYATDLIVQTLFDWRH 274
            MDRP DTWPTSAWG LANAS  LHTSLPTN+WWENIVLG P+QE  +NN+ VIPYTFDVAGD  GLR+HFP+V A+DLIVQT FDWRH
Sbjct:    1 MDRPEDTWPTSAWGALANASVSLHTSLPTNAWWENIVLGFPSQETRSNNIVVIPYTFDVAGDTAGLRVHFPQVVASDLIVQTTFDWRH 88
[Close]
BLAST of mRNA_D-dudresnayi_contig9860.28671.1 vs. uniprot
Match: A0A7S4S947_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S947_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.760e-10
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:   62 NASTDLHTSLPTNSWWENIVLGSPTQE-VSANNLA-VIPYTFDVAGDIPGLRIHFPKVYATDLIVQ 253
            N   + H ++PTN W+EN+++GS  Q+ V+ NN A  IPY  D AG IPG+R+ FP   A+D IVQ
Sbjct:  125 NRMKEKHAAMPTNMWYENLLIGSINQKRVTENNRAYTIPYIVDFAGPIPGIRVQFPHKVASDTIVQ 190
[Close]
BLAST of mRNA_D-dudresnayi_contig9860.28671.1 vs. uniprot
Match: A0A7S4SAK7_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SAK7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.790e-10
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:   62 NASTDLHTSLPTNSWWENIVLGSPTQE-VSANNLA-VIPYTFDVAGDIPGLRIHFPKVYATDLIVQ 253
            N   + H ++PTN W+EN+++GS  Q+ V+ NN A  IPY  D AG IPG+R+ FP   A+D IVQ
Sbjct:  130 NRMKEKHAAMPTNMWYENLLIGSINQKRVTENNRAYTIPYIVDFAGPIPGIRVQFPHKVASDTIVQ 195
[Close]
BLAST of mRNA_D-dudresnayi_contig9860.28671.1 vs. uniprot
Match: A0A7S4W3N5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W3N5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.970e-8
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:   86 SLPTNSWWENIVLGSPTQE-VSANNLA-VIPYTFDVAGDIPGLRIHFPKVYATDLIVQ 253
            ++PTN W+EN+++GS  Q+ V+ NN A  IPY  D  G IPG+R+ FP   A+D I+Q
Sbjct:  121 AMPTNMWYENLLIGSINQKRVTENNRAYTIPYIIDFVGPIPGIRVQFPHKLASDTIIQ 178
[Close]
BLAST of mRNA_D-dudresnayi_contig9860.28671.1 vs. uniprot
Match: A0A482RYK6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYK6_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 2.050e-7
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 2 
Query:   17 RPRDTWPTSAWGVLANASTDLHTSLPTNSWWENIVLGSPTQEVSANNLAVIPYTFDVAGDIPGLRIHFPKVYATDLIVQ 253
            RP D+ P  A+  L N    L    PTNSW+EN+++G P   V  +N+  +PY  D +G I G+R H   V A+  IV 
Sbjct:   89 RPGDSQPGPAFRTLINRGIPL----PTNSWYENLLIG-PDNTVPESNVFQVPYILDTSGSIVGVRTHPSHVQASSKIVM 162
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9860.28671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JQG4_9PHAE5.210e-4880.22GH81 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FR89_ECTSI8.330e-4578.41Endo-1,3-beta-glucanase, N-terminal, family GH81 n... [more]
A0A7S4S947_9STRA2.760e-1048.48Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4SAK7_9STRA2.790e-1048.48Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S4W3N5_9STRA2.970e-848.28Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A482RYK6_9ARCH2.050e-739.24Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9860contigD-dudresnayi_contig9860:455..3425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEndo-1,3-beta-glucanase, N-terminal fragment, family GH81
Ec32 orthologEc-08_004960.1
Exons3
Model size274
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9860.28671.1prot_D-dudresnayi_contig9860.28671.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9860 455..3415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.4687293-CDS-D-dudresnayi_contig9860:454..5021622930945.4687293-CDS-D-dudresnayi_contig9860:454..502Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9860 455..502 -
1690557975.3226893-CDS-D-dudresnayi_contig9860:454..5021690557975.3226893-CDS-D-dudresnayi_contig9860:454..502Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9860 455..502 -
1622930945.498244-CDS-D-dudresnayi_contig9860:1906..19931622930945.498244-CDS-D-dudresnayi_contig9860:1906..1993Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9860 1907..1993 -
1690557975.336665-CDS-D-dudresnayi_contig9860:1906..19931690557975.336665-CDS-D-dudresnayi_contig9860:1906..1993Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9860 1907..1993 -
1622930945.5200703-CDS-D-dudresnayi_contig9860:3286..34151622930945.5200703-CDS-D-dudresnayi_contig9860:3286..3415Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9860 3287..3415 -
1690557975.3474915-CDS-D-dudresnayi_contig9860:3286..34151690557975.3474915-CDS-D-dudresnayi_contig9860:3286..3415Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9860 3287..3415 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.542436-UTR-D-dudresnayi_contig9860:3415..34251622930945.542436-UTR-D-dudresnayi_contig9860:3415..3425Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9860 3416..3425 -
1690557975.3601005-UTR-D-dudresnayi_contig9860:3415..34251690557975.3601005-UTR-D-dudresnayi_contig9860:3415..3425Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9860 3416..3425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9860.28671.1

>prot_D-dudresnayi_contig9860.28671.1 ID=prot_D-dudresnayi_contig9860.28671.1|Name=mRNA_D-dudresnayi_contig9860.28671.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=88bp
MDRPRDTWPTSAWGVLANASTDLHTSLPTNSWWENIVLGSPTQEVSANNL
AVIPYTFDVAGDIPGLRIHFPKVYATDLIVQTLFDWRH
back to top

mRNA from alignment at D-dudresnayi_contig9860:455..3425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9860.28671.1 ID=mRNA_D-dudresnayi_contig9860.28671.1|Name=mRNA_D-dudresnayi_contig9860.28671.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2971bp|location=Sequence derived from alignment at D-dudresnayi_contig9860:455..3425- (Desmarestia dudresnayi DdudBR16 monoicous)
TTGCCCGCACATGGATCGTCCAAGAGACACATGGCCAACATCTGCTTGGG
GGGTGCTCGCCAACGCGTCGACGGATCTGCATACGAGCTTGCCCACCAAC
TCGTGGTGGGAGAATATTGTGCTCGGTTCTCCGACTCAGGTTTGCGTTCG
TGCTTGCTTGCTTGCTGGGAATGAATTGTGTATAGTGCTGTAGAGCTCTA
CGAGTATACATATAGCAGTTAGTACTAGGCCGTGCCAGCAGATATCATAG
ATATGTCGATGGTGTAAACGCAAAAACGGTTGTATGTTGATGTTTGTCCA
TGATGTTCGCGGTTCGCCCGCATGCGCGATTCTGCTATGCAGTCTAGAGT
CTATGATAGAGCCCTACGAAAAGAGCTACGAGTACCAAATACCAAATACG
ATAGAGCTTGAGCGAGCGACAACAACAGTAGTGGTATGGTAGTACAGACA
GACTGAAAGTACAAGTACAACAGACAGCAGTGCAACCTCAAGCATCAACA
TACTTGTAGCATACTCGAACAAGTTAGACTCTTGGAACCTGGCCAGTCAC
CAGAGGTACTCCATCATAAACGCACTATCATACTCTGCTACTAAAGACTA
CAGTCTACAGACTGCAACAGGCGTATCCTACACCCGCCCGGGGGCACGAC
TTACTTTTGTATATACTGTACTACTGTATTGTAGTCTGTAGTATTGTGTA
GTACGAGTAGCACACCACACAACAAAACAACGACGTACAAGAAATTACGT
GCTCCAATACGCTTTTATTTTAGTACCAATTTTACGGGAGATGCGAAGCC
AAATGACGTATTTTTGTTTGGCCTAGCTCCGGCGGCGCCTCCAGCGGGAC
CCCTCGCCAGCCGGGGGGAGGAGCTTTTGGCTTGCGGCGGTTGGTGCCAC
TCGCGCACCATTCGCCATTTAAGTGATTAGACCCACCATTTCCAATTTCC
ATTGCCTAATATTTATTATTTTTACTTACGAAAACATCAGCCATGACGTT
CCAAACTGGTTCGGGGGCCAGGGGATAATCGTCAACCTCACTACTGTGTG
ACACATCGGTTGCGCGGAATCTATCGGTCCTCAGATAAGGTATAACGTAG
TGACTCCCCTGGGTCGTTTATGTCTCTGGTACGAGAGGCTGATGGCTGAT
GTATATTGAAGTATGTAATTGAAACTGGGTTGGGTTGGAGTTGTGCTGGG
TTCGGTTGGGGTAGGACTACACTCACCCTTACGTGTAGCGCACATTGCAC
GGGCAACGCCCACCGTGGTCACCTACTGGTTAGTAATAGTACGGGCAGTT
GCACCGACTGTTGCCGCAGGCCGCAGGCCAGTGCGAGGTTGCGTGGCGGC
TGGCGGCGCGTGATTGTCGCGATCTGTGTACTCTGGACCCTGAGCCCCGT
TCCCCCCTCCTGACCCTCCTTTCTTATCCTAGGAAGTATCTGCCAACAAT
TTGGCCGTGATCCCCTACACCTTCGACGTGGCGGGAGACATACCCGGACT
TCGGATTCACTTCCCTAAGGTGAGTCAGTTATTTGTTTCCCTAACGTGAG
TCGACTATTTGCTTTGTTCGAGAGGCGTTTTTTTTCACACGACTAAAGCT
GGCGGAAGCTCCACTTTCCTTTTTACACCGCGCACAGCAAAATACCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCGCACCAACGCCCCACCCCCACCCCA
ACACCGCACCCACACACAGAACACATAACTCNNNNNNNNNNCCCCAAACC
CGGCGGACCCCCCCCTTTCCCTTTTCCCCCCCGCCCACAAAAAACCCCCC
CCCCCCCCCCTCCTAGACACATACACGCAAACAGATGGCAGCTTACAGTA
GTAGTACCCTCATATTCCAGGAAATAATTTCCCGCTCTTTCTGTTACCGC
AATTTTGATCATGGTGGCGATTTTGGTGTTCCCAAAACTACGCCGCCCGG
CCTCTCTCTCTCTTTCTCTCTCTCTCGGAATGCTTCTTGTGTTGAGGACG
CGGCTACCTCGTGGTGTAGAAAACCCGTTCGGTGCGAGCCACGGGGTTAT
TTTATTTTTATTTATTTTTTTCCGTCCCATTTATTATCTTCGCTCTATTC
TTTCTCTAGCTCCATCTATCTCTCTTCGTAGCTCAGATCCGGGGTCACAT
AGTAGGCGCTCCTCCCTCCTTCCCACTACGGTACGTGCCTACATTTTTAT
CGCGAGAAGAGTGCGGCACTTTCTTCCCTCGACTTTCATCGAATTGTGCT
TACTCACACTCTCGCGTTTCCGCGACGGAAGATGGCACTGAACAGTGCCA
CCGGGAATCGAACCCCCTACTTCCGCCAACAGAGGCAACACCCTAACCAT
TATAACACTGGGGTAGAGCCCCTAAATATTTAATAGCTCGGTTACCCCAG
CAAGCAAGGGACACACGAAGGCGGCTGGCTGCCTGGCTGGCTAGCCGGCT
GGCTTTGCTCGTAAGAAGGGCTGCGAACTCGGCGGCGACACGTATTTTTC
AAAGGCTCCGTGATACATTGGGTCTCTACCGATGAAATGGCGTTTTTTTC
TGTTATCTCCCAGACGAAGCGTAGCACCCCCCTCCCCCCTTTGCTTCTCG
ACAGTACAGCACACGTTCCTCGTAGAGAGAGACCTGTTTACTTACGTGAA
GATTGTCAAGCTGGTGGTCACAGCTGCTTGTATGCCAGCGCCAAAAAGAA
CACAGGTATAGGTTTCTCTCCCCCCGCCCCTCCTCCCGGAAAAAACGGTA
AGAGAACAAAAAAACAAATGCTACGTATATTGCTGTACTGTATCACCCCT
TGTGCTATGTGTTTTTTTCTCTTTTTTGCCTCATTTTTGTCTCTCTATTT
TTCGCTGTTTTTGGCGATTTTTTTTTCTTTTTTTTTTCTCTTTTTTTTTT
ACCCATTTTTCTCTTTTCACGAGGTGTACGCGACCGACCTCATCGTGCAG
ACGCTCTTCGACTGGCGCCAC
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9860:455..3425-

>mRNA_D-dudresnayi_contig9860.28671.1 ID=mRNA_D-dudresnayi_contig9860.28671.1|Name=mRNA_D-dudresnayi_contig9860.28671.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at D-dudresnayi_contig9860:455..3425- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGATCGTCCAAGAGACACATGGCCAACATCTGCTTGGGGGGTGCTCGC
CAACGCGTCGACGGATCTGCATACGAGCTTGCCCACCAACTCGTGGTGGG
AGAATATTGTGCTCGGTTCTCCGACTCAGATGGATCGTCCAAGAGACACA
TGGCCAACATCTGCTTGGGGGGTGCTCGCCAACGCGTCGACGGATCTGCA
TACGAGCTTGCCCACCAACTCGTGGTGGGAGAATATTGTGCTCGGTTCTC
CGACTCAGGAAGTATCTGCCAACAATTTGGCCGTGATCCCCTACACCTTC
GACGTGGCGGGAGACATACCCGGACTTCGGATTCACTTCCCTAAGGAAGT
ATCTGCCAACAATTTGGCCGTGATCCCCTACACCTTCGACGTGGCGGGAG
ACATACCCGGACTTCGGATTCACTTCCCTAAGGTGTACGCGACCGACCTC
ATCGTGCAGACGCTCTTCGACTGGCGCCACGTGTACGCGACCGACCTCAT
CGTGCAGACGCTCTTCGACTGGCGCCAC
back to top