mRNA_D-dudresnayi_contig986.28670.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig986.28670.1
Unique NamemRNA_D-dudresnayi_contig986.28670.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig986.28670.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.510e-15
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 3 
Query:  120 MGLFDPSSVEWWLPASYITIIAVLEVLLKAWRHKNFALSETHVKGREEDEDGAGLDSIRAPLLQETGGNGDAHQQPQYSVTATGMLWTTLTFTYGLCIYE 419
            MGLFD ++VEWW+PASY+ +  + +V   AW+ +   + E   K  + D D     S+ APL+ E   N D  + P+Y+VTATG+LW+TL+ ++GLCIY+
Sbjct:    1 MGLFDAATVEWWVPASYLLLAGIADV---AWKSRE-GVHEAATKSND-DTDSTNT-SLLAPLIHEGAENSD--RPPKYNVTATGVLWSTLSISWGLCIYQ 92
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig986.28670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4L0_9PHAE3.510e-1543.00ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig986contigD-dudresnayi_contig986:28475..29176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue7.6e-14
Seed eggNOG ortholog2880.D7G1Q3
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig986.28670.1prot_D-dudresnayi_contig986.28670.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig986 28594..29176 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.3425326-UTR-D-dudresnayi_contig986:28474..285931622930945.3425326-UTR-D-dudresnayi_contig986:28474..28593Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig986 28475..28593 +
1690557975.2891388-UTR-D-dudresnayi_contig986:28474..285931690557975.2891388-UTR-D-dudresnayi_contig986:28474..28593Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig986 28475..28593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.3662853-CDS-D-dudresnayi_contig986:28593..287921622930945.3662853-CDS-D-dudresnayi_contig986:28593..28792Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig986 28594..28792 +
1690557975.2992764-CDS-D-dudresnayi_contig986:28593..287921690557975.2992764-CDS-D-dudresnayi_contig986:28593..28792Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig986 28594..28792 +
1622930945.3947573-CDS-D-dudresnayi_contig986:29075..291761622930945.3947573-CDS-D-dudresnayi_contig986:29075..29176Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig986 29076..29176 +
1690557975.310726-CDS-D-dudresnayi_contig986:29075..291761690557975.310726-CDS-D-dudresnayi_contig986:29075..29176Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig986 29076..29176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig986.28670.1

>prot_D-dudresnayi_contig986.28670.1 ID=prot_D-dudresnayi_contig986.28670.1|Name=mRNA_D-dudresnayi_contig986.28670.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=100bp
MGLFDPSSVEWWLPASYITIIAVLEVLLKAWRHKNFALSETHVKGREEDE
DGAGLDSIRAPLLQETGGNGDAHQQPQYSVTATGMLWTTLTFTYGLCIYE
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mRNA from alignment at D-dudresnayi_contig986:28475..29176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig986.28670.1 ID=mRNA_D-dudresnayi_contig986.28670.1|Name=mRNA_D-dudresnayi_contig986.28670.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=702bp|location=Sequence derived from alignment at D-dudresnayi_contig986:28475..29176+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTAGTAGTACAACAACAACTGTACAACAATAGTAGTAGTGTCAACTCTCA
GTCCTTCTGTGGAGGCAGTCCAGCATCACAACACTTGGTGCGTTGGTGCT
GCCTCTCGGCCGCAGCGCGATGGGGCTCTTTGATCCATCATCAGTGGAGT
GGTGGCTGCCTGCCAGCTACATAACGATTATTGCTGTATTGGAGGTCCTG
TTGAAAGCATGGCGTCATAAGAATTTCGCGTTGTCAGAAACCCATGTCAA
GGGGAGGGAGGAGGATGAGGATGGTGCGGGTCTGGACTCGATCAGAGCTC
CGCTCTTGCAGGAGACTGGTGAGGGTAGATGCAGGCTGGTGTAGTCGGGA
GAATCTGGTTTGTGTTGGCACTGTTGAATGAGGATGGCATGCTTGGTGCG
CTTGGGTTGGGGTCCTGCCTGTTCTTGTTGTTGCTGTTGCTGTCAATGAT
GCTGTCATACCAGTATGATACACTATGATACTGAGACTGTTTGGTGAGCT
GTTACGGCGAGGATGGCTAATGGTTGACTCACCATGATATCGGTGAATAC
CCAGCGCATTTCTCTCCTTGTCCTCTACGTGCCTTTTCTGCTGCGTCACA
GGGGGAAACGGCGACGCTCACCAGCAGCCTCAGTACAGCGTGACGGCTAC
TGGCATGCTTTGGACAACTCTCACTTTCACTTACGGATTGTGCATCTACG
AG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig986:28475..29176+

>mRNA_D-dudresnayi_contig986.28670.1 ID=mRNA_D-dudresnayi_contig986.28670.1|Name=mRNA_D-dudresnayi_contig986.28670.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at D-dudresnayi_contig986:28475..29176+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGGCTCTTTGATCCATCATCAGTGGAGTGGTGGCTGCCTGCCAGCTA
CATAACGATTATTGCTGTATTGGAGGTCCTGTTGAAAGCATGGCGTCATA
AGAATTTCGCGTTGTCAGAAACCCATGTCAAGGGGAGGGAGGAGGATGAG
GATGGTGCGGGTCTGGACTCGATCAGAGCTCCGCTCTTGCAGGAGACTGA
TGGGGCTCTTTGATCCATCATCAGTGGAGTGGTGGCTGCCTGCCAGCTAC
ATAACGATTATTGCTGTATTGGAGGTCCTGTTGAAAGCATGGCGTCATAA
GAATTTCGCGTTGTCAGAAACCCATGTCAAGGGGAGGGAGGAGGATGAGG
ATGGTGCGGGTCTGGACTCGATCAGAGCTCCGCTCTTGCAGGAGACTGGG
GGAAACGGCGACGCTCACCAGCAGCCTCAGTACAGCGTGACGGCTACTGG
CATGCTTTGGACAACTCTCACTTTCACTTACGGATTGTGCATCTACGAGG
GGGAAACGGCGACGCTCACCAGCAGCCTCAGTACAGCGTGACGGCTACTG
GCATGCTTTGGACAACTCTCACTTTCACTTACGGATTGTGCATCTACGAG
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