mRNA_D-dudresnayi_contig9842.28656.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9842.28656.1
Unique NamemRNA_D-dudresnayi_contig9842.28656.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9842.28656.1 vs. uniprot
Match: A0A6H5J884_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J884_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.030e-39
Identity = 76/130 (58.46%), Postives = 97/130 (74.62%), Query Frame = 1 
Query:    1 QDPDLSSGIRHLIYGAIRLDQTFQNTLWLTRNLVTWLLTETDWMDDEAAKLGTYILGLQSTEDAAAGLVAWAIDEK-YLDGVASKALADSLPYSHDQLKETMIWAATETLKSDWALKLAKDTVIEMIKSK 387
            +DP LS+GIRHLIY A+ LD T+Q++L LT  L+ WLL+ETDWMD EAAKL  Y++ L+ TE A   LVAWAI E   LD  +S+ LA SLP    Q+ ++M+WA TETLKSDWAL++AK T +EMIKS+
Sbjct:  258 KDPALSTGIRHLIYNAVGLDYTYQSSLTLTIPLIRWLLSETDWMDAEAAKLCAYLVRLEQTELATILLVAWAIREPGILDPSSSRGLAASLPLGSQQITDSMVWALTETLKSDWALEMAKSTTVEMIKSR 387
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9842.28656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J884_9PHAE3.030e-3958.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9842contigD-dudresnayi_contig9842:9542..11061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001310.1
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9842.28656.1prot_D-dudresnayi_contig9842.28656.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9842 9542..11061 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.3920443-CDS-D-dudresnayi_contig9842:9541..96251622930943.3920443-CDS-D-dudresnayi_contig9842:9541..9625Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9842 9542..9625 -
1690557974.5389853-CDS-D-dudresnayi_contig9842:9541..96251690557974.5389853-CDS-D-dudresnayi_contig9842:9541..9625Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9842 9542..9625 -
1622930943.4127078-CDS-D-dudresnayi_contig9842:9792..99151622930943.4127078-CDS-D-dudresnayi_contig9842:9792..9915Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9842 9793..9915 -
1690557974.5481272-CDS-D-dudresnayi_contig9842:9792..99151690557974.5481272-CDS-D-dudresnayi_contig9842:9792..9915Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9842 9793..9915 -
1622930943.431553-CDS-D-dudresnayi_contig9842:10881..110611622930943.431553-CDS-D-dudresnayi_contig9842:10881..11061Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9842 10882..11061 -
1690557974.5564134-CDS-D-dudresnayi_contig9842:10881..110611690557974.5564134-CDS-D-dudresnayi_contig9842:10881..11061Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9842 10882..11061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9842.28656.1

>prot_D-dudresnayi_contig9842.28656.1 ID=prot_D-dudresnayi_contig9842.28656.1|Name=mRNA_D-dudresnayi_contig9842.28656.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=129bp
QDPDLSSGIRHLIYGAIRLDQTFQNTLWLTRNLVTWLLTETDWMDDEAAK
LGTYILGLQSTEDAAAGLVAWAIDEKYLDGVASKALADSLPYSHDQLKET
MIWAATETLKSDWALKLAKDTVIEMIKSK
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mRNA from alignment at D-dudresnayi_contig9842:9542..11061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9842.28656.1 ID=mRNA_D-dudresnayi_contig9842.28656.1|Name=mRNA_D-dudresnayi_contig9842.28656.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1520bp|location=Sequence derived from alignment at D-dudresnayi_contig9842:9542..11061- (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGATCCAGACCTTTCGAGCGGCATCCGGCATCTCATCTACGGTGCCAT
CCGCTTGGACCAAACCTTTCAAAACACTCTGTGGCTTACGCGAAACTTGG
TAACGTGGTTGTTGACAGAGACGGACTGGATGGATGACGAGGCCGCCAAG
CTCGGCACCTATATCTTGGGCCTCCAATCGGTACGAGCATTTGGTCTGGA
CGCCCTCGGGCGGAGGTCGGGGCAGGGGAGGAGGGGCGTACTCATTTGTT
GCTCGCCTTAGTCATTTTAGCATTGACCACGCATCCCTTTCGAAACGTAG
CACCGTTCCTACTCCTAATAGAGACACCTCCAACATTTGGGCGCTGTGTG
CCTTTTTGCCATATCTTATGTAAAACCTTTTGCTTATCCTATCCCCTTCC
TGATTTGCTTTTTGTGGTCACGTTCTATGTCCTAGGATAGGGGGGGGGGG
GGGATAACGCATGTAACCTTAGACTCTCATCCCTACAATGGGTGAACGAA
GCGATATACCGGCGGAAGGGTAGGGGGCCTGGAGATGTTCGTACAGAAAG
CGGTGTATGTATGCTGGATGGCGGTAAATGCTTTTGTTTCGTTTTGTAAC
CGTGGGTGGACGTTTGCTTCGGTGGTAGTAGGAACGAAGCGTGCTATGGA
GTAGTGGTTACTGTCTTGTGGCGATGGATTGCGACGGGGGAAACCCGTGG
TTGGCCGTCGTGTTTGGCTACGCTGGCACCAACCCAAGCCTTATCTTGCG
TAGGTACGGTAGCGGCGCCAGAGAATGGTCTCGCGAGGGAGGTGAGTATA
AGCCCCGAAAGACGCTCAGGCGGACATGCATGGGAGTGTGGACCTGGTAG
CAAATTTTACTAATTGTTCAGGTGTACCGTTTTTGGTAAGATTTCCCTTT
TCATTTTCTTTCAATTTTGCGATTTGGTGCTTGCTCCATGTTGCTTGTGA
CCACGGAATGCCGTCTCTCTCTTAGGATAGAAAATATCTGCTCAGACTCT
GAGTTCGTTGCGGGATGTCGTCGAGTAGAAAGGACAACAACAACAATGGG
TGACAACAGCAACGGCCCTGTACAGTTTGCGCCAGTTCCTGTGTGAACAA
TGAAATCACGCTCTCACCTATGCCGTACCGCGCCCATGTCTTGCAGACGG
AGGATGCGGCTGCAGGCCTCGTGGCATGGGCGATCGATGAGAAGTATCTG
GACGGCGTAGCTTCGAAGGCCTTGGCAGACAGCCTCCCTTATTCGCATGA
CCAGCTCAAGGAGACAATGGTAAGGCTTGGGGTGTCTTGTGGTAACAGAT
TGTCGTAGTAACACGAATGGCGCTATAACTCCCCAACCTTTAAGTTCGCG
TACATTTGTGCTCGCGTTTTTCTGCTGTATGTATGGCTTTATTGTCCTGC
GCCGTTCTATTCCACTCTCGCGTGTGTTACACACAGATCTGGGCCGCAAC
GGAAACTCTTAAGTCGGACTGGGCCCTGAAGCTGGCCAAAGACACTGTGA
TAGAAATGATTAAGTCCAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9842:9542..11061-

>mRNA_D-dudresnayi_contig9842.28656.1 ID=mRNA_D-dudresnayi_contig9842.28656.1|Name=mRNA_D-dudresnayi_contig9842.28656.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at D-dudresnayi_contig9842:9542..11061- (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGATCCAGACCTTTCGAGCGGCATCCGGCATCTCATCTACGGTGCCAT
CCGCTTGGACCAAACCTTTCAAAACACTCTGTGGCTTACGCGAAACTTGG
TAACGTGGTTGTTGACAGAGACGGACTGGATGGATGACGAGGCCGCCAAG
CTCGGCACCTATATCTTGGGCCTCCAATCGCAGGATCCAGACCTTTCGAG
CGGCATCCGGCATCTCATCTACGGTGCCATCCGCTTGGACCAAACCTTTC
AAAACACTCTGTGGCTTACGCGAAACTTGGTAACGTGGTTGTTGACAGAG
ACGGACTGGATGGATGACGAGGCCGCCAAGCTCGGCACCTATATCTTGGG
CCTCCAATCGACGGAGGATGCGGCTGCAGGCCTCGTGGCATGGGCGATCG
ATGAGAAGTATCTGGACGGCGTAGCTTCGAAGGCCTTGGCAGACAGCCTC
CCTTATTCGCATGACCAGCTCAAGGAGACAATGACGGAGGATGCGGCTGC
AGGCCTCGTGGCATGGGCGATCGATGAGAAGTATCTGGACGGCGTAGCTT
CGAAGGCCTTGGCAGACAGCCTCCCTTATTCGCATGACCAGCTCAAGGAG
ACAATGATCTGGGCCGCAACGGAAACTCTTAAGTCGGACTGGGCCCTGAA
GCTGGCCAAAGACACTGTGATAGAAATGATTAAGTCCAAGATCTGGGCCG
CAACGGAAACTCTTAAGTCGGACTGGGCCCTGAAGCTGGCCAAAGACACT
GTGATAGAAATGATTAAGTCCAAG
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