mRNA_D-dudresnayi_contig9839.28647.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9839.28647.1
Unique NamemRNA_D-dudresnayi_contig9839.28647.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9839.28647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9839contigD-dudresnayi_contig9839:2873..10566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size382
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9839.28647.1prot_D-dudresnayi_contig9839.28647.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9839 2873..10457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.4209697-CDS-D-dudresnayi_contig9839:2872..30201622930942.4209697-CDS-D-dudresnayi_contig9839:2872..3020Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9839 2873..3020 -
1690557974.195144-CDS-D-dudresnayi_contig9839:2872..30201690557974.195144-CDS-D-dudresnayi_contig9839:2872..3020Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9839 2873..3020 -
1622930942.4396045-CDS-D-dudresnayi_contig9839:10332..104571622930942.4396045-CDS-D-dudresnayi_contig9839:10332..10457Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9839 10333..10457 -
1690557974.2045488-CDS-D-dudresnayi_contig9839:10332..104571690557974.2045488-CDS-D-dudresnayi_contig9839:10332..10457Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9839 10333..10457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.460336-UTR-D-dudresnayi_contig9839:10457..105661622930942.460336-UTR-D-dudresnayi_contig9839:10457..10566Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9839 10458..10566 -
1690557974.2139907-UTR-D-dudresnayi_contig9839:10457..105661690557974.2139907-UTR-D-dudresnayi_contig9839:10457..10566Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9839 10458..10566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9839.28647.1

>prot_D-dudresnayi_contig9839.28647.1 ID=prot_D-dudresnayi_contig9839.28647.1|Name=mRNA_D-dudresnayi_contig9839.28647.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=91bp
MSFFDGDLHGDVYGDVDEVMMPRNIDENPALREKRLREENVTLKGQLVSA
REIIKGVARGGVAVDGGHKRPRLGAGGVHGEEAVVRYDRW*
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mRNA from alignment at D-dudresnayi_contig9839:2873..10566-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9839.28647.1 ID=mRNA_D-dudresnayi_contig9839.28647.1|Name=mRNA_D-dudresnayi_contig9839.28647.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=7694bp|location=Sequence derived from alignment at D-dudresnayi_contig9839:2873..10566- (Desmarestia dudresnayi DdudBR16 monoicous)
CTCCTCCCCCTACCGCAACATACTGACAAAATACTGCAACTCCCGACTTC
GAGGTTCGCTGTCTCTTTACGGCATAGCAGGAGGGTAATCAGCACTCTTA
GAGCTAAGCATGAGTTTCTTTGACGGTGATCTACATGGTGACGTGTACGG
AGATGTCGACGAGGTTATGATGCCTAGAAATATCGATGAGAATCCCGCTT
TGCGAGAGAAGCGGCTGAGAGAGGAGAACGTCACGTGAGACAAATTTTCG
TTGTTTTTACGCGTACTTACAAAAGTACTGCATGCTTTCGTTGTTGTTGT
TTGCCTCTCTCCTCCCCACGTGTTTTCGTCCTACGCAACAAGTGCCTTAC
TTTTCCCCTGCTGTTGTGCATGGACTTTTAGCTGCAGCCGGGGCGGGTTT
TGCTGGTCTACGTGTTGGCACTTTAGTAAGACAGTATTGGCACGTCCTTG
AACGATGTGACGGGCGTAGTGCAATTGGTCGTTTGTTGCTTTTTCGGCCA
GCAGCAAGATTTCAAATTTCGATTGACATCACATGTTCCTGGTTCCCCGT
GTTCCCCGTGTTCCCCGTGTTCCCCGTGTTCCCCGTTGACTTTCTTTTAG
AGAAAGCGTACTGCGGGACATGCTCTCCGTGTTTTTCCACAACATAGTTC
GCCGATTAGGATGCGTCTGTTGTGTGTTTGCTCTATGATGTCGATAGCAG
CAAAAAGGAACCATCTCATAGGGATGGTGTATCGATGCTAATTGTTTAGT
AGAGAGATGCTAAGCTGAATGTTTGGTCGTACACGTATTATATGGCGGTT
TGATTGCTGACCAGTCGGCTATGCCGTCATGCAAGCGTATATTAGTACTC
CGTATTATAGCATGATACAAGGCGCCTACCGGGCAGTGAACTGCCCGGCA
GGCTCGCAGGATTTTAGGGGGCATGCCAAGGGTGTGAGGGGAAATCCGCA
AGGCATGGAACACAAACTTCATCGTAGGTGCATGGCTCAGTAAAATAGGC
TCAGTAAGATAGTAGTATAATAACAGTCTGGGTGGACGGCTTATCAACCC
ATATGGGTACCTGGAAATCTCCCCCAATATCCGTTCAATCTTCGAAGAGG
AACAAAATAAGACTGTACAGCAAGTTGCCAGAATGAAGAGGCAGAAAGAG
TGGTGCTCAGAGTAGTTGTTGTGAGAGGTGTACCTACACTTGCGTCGCAC
GGCAACACCCACAGACAGCCCACGGAGACATACGAACTATTGCAGGACAG
GTCATGATTAGCTGCAACCGGCATGCCACGTTTGAGCAAAATCCATGCAG
TATCGGAGGAGTGACACCTATCCGCGTGAACTTGTCCCGTAATTTTTCAA
GCAAAAACGTGCTCAAGTGACTGTTTGCTTCACAACGCCGTCACAAAGAG
CATCGTTGCTCCTGCGATTCGGGACGTGTTGATCCCAAACCAACTACATC
GTCCTCGCCTGATCATGGGCCAACTCACAAGCTATCAAACGTTGCTTTGG
GTGCAGTGTGACTTTCGCACTCCGCGGTTTGGTGCGGTCAGATGGTGCTT
TGGTCGCATCGGTAACATTGCCGTATTTATTTATTTGGTGCGTTTTTGAA
TCTCTTGTGATTTGTTGTGCCGTTCCGGGCCAAAAGAAGGGCGTTATTTG
CAATGAAAAGTAAAGCCGTTGTTGTTACTCGTATTTGTGCGGTTTTTTCC
GCGAAGAGCCGGGGGCGAGGAACAATGGTTGAACTCTGCGATGTCAAGCG
TTTGGGACAATCCTAGTTAGTTTTATGATGCTTTACTGTCGCGCTGTCTG
TCCAGCCTGGGGCACTATAATCGCGGACGCAACAGGGTGTGGCCTTGAAT
ACCGAAAGGGCATCTGCTTGATGTCTTTTGTTTAATGTAGGGAATCTCCA
TAAACAAACATGCAACGACATTCTAGAGAAGGGGTAACCCGTGCGGAAAT
GATGGCCAACGACGTAACTTCGAATCCCACCGTGGCTGATGCCCTCTTTT
TCGCTATTTCAAACTTGTTTGTTTTCGTCAGCATAGCAACATAGCACTCC
TTGTAGGTGTAGAGCCTAGTCATGCAACCTATAATGCAGGCCTACCGATG
CATGATAGATCTACTCCACATCTACCTGCTGATGTTGATGTTCTGCTGGT
GGTGCTACACTCTTCTACATGTTGTACGCACCAGGTCTTGTCAGACCTCT
CGACCCGGCCCGGCCCGGCCCACCGGCTCGTGAACAGCCCCGGTAATTTG
TAATATGATTATAGTACCACAGTACAACAACGGTATATTGTATTAGTCTT
AATGATCAATGATGTAACAACATGGCGGGTTAGATGCGATACAACATTGT
GCTGCTTGCAGCTGGAAACGATATGCGGCTGCAGCCAGGAGAGCTCACGG
ATTGCAGTAGTAATGGACGGCTATGTACCCCCCCCCACCAACCCCCTTCC
TCAGGGGGTCTGTGGACACTCTGGGGGTGGCGAAGTTCGGAAAAGTTCTT
GGCGTTTGGTTAGCCTTGTGGCAAGGTTTGGAAGCTTTATATCATGCCCG
ATCCGAGCCCATATACCATCTTGATATGAGAATACTACGATGTTAGCGGT
ACAGGCAGGCTAGGGCCACCAACATGATTTCAACCTACAGTAGTATCGTG
TATTTATCGCACAAACAAGACCCCAAAACAAAACGTCACAGATGGTGTAA
TAAGCAGTCAACATAAGTAAGTAATAATTGTATTACCTCGTACTACGGTG
GTAGTACTATTCTGACTATGAATCATCAGTAGTAGTAGTAGAAAGAGCCC
TAACGTTATTGTAGTGCTTATGCAGCGAGTCTGCCTCCGGCGACTCCGAA
GGAACGGCGCTTTGGGTCGCTCCTGGTCGGTTCGCAGTTCAGTACTTCTA
GACAACATCGTCCAAGGCTATACCTCTACTTCGTATACTCCTTACAAAGG
GCTCACACTAGACAATCTATTATAATAGTAGTAGTGCCGTTGTTCATCGA
CGTTATTTTTTGTTGCTCTTGATTTGATTAATTATCAATATGATATTATT
CGTATTTGGAGTTTTAGCGTCATTTACAATCATATTTATTTGATTGATTG
TTTGTACGGGTTCGATTCCAGGTGGCACTTTTCTGTGCCATCTTCCATCG
CGGAAAAGGCGAGCGTGAGAAAACACAATTCGATTAAAGTCGACAAGGGA
AGAAAGTGCCGCACTCTTCTCGCGATAAAAATATAGGCACGTACCGTAGT
GGGAAGGCGGGAGGAGGGCCTACTATGTGACCCCGGATCTGAGTTACGAA
GAGAGATGGATCTAGAGAAAGAGTAGAGCGAAGGTAATAAATGGGACGAC
AAAAAAAACAAAAAACTGACAGACAGAAAAAATTATACCTTATTCCCTCA
CAAGTGTCCATGTACTTGAATAAAGTATGATTTTTGGTCCCTTAACCCCC
CCCCCCCCTCCCGCCAGGGTCCCCGGGTTCGGAATACCTCCGGCTAATGC
GGGGATGAACTCAAACCGTCCTCGGCTCAAAACGCTTCCTCCATGGCTTG
GCAACTCCGCAACGTTCGATCGGCCGTCCGTCCGCCGGGTTGGGGTTTAA
ATTGGAGTTAGTTGTGTGCCAGGCGCCCTTTATAAGGCTACTATCACTAT
CGTAGCTCGCGCTTGTACATATATATATATATCGCATGCCTCTGTTTCTA
CTGCGGATTGTCCGCCTGCCCTTCGATGCCCTCAACATCTCGGTGCCGCT
TCATGTTTTTGTTCATATTATATTTATTTGTTTATACTTTACATGTGCCA
TACATTTTGCCTTTGCCTGCTCATTTTCATCTTGCTCATTTTGCATCGCC
GTCATATCCACTGAGATATTAAGTCAGCTTCAAAGTGACATTCGTTTTCC
ATAGCACGCATACTGCCTTTATATGTAGATCGCAAAAAAATCCAACGCAT
ACTATGCCTATAGATTACAAAAGCCAACGCGGTCAATCCGATACCCTGGG
GACTAGCAGGCGGGTGCATTGTCACCCCGCGTGCTCTTCAAGCAATGGTG
CTACACTCTTCTACATGTTGTTGTAAGCACCCGGTGAAGTCGCATTGCTT
TGGCATGTTGTACGAGTACTACTGCTTGTCATCTATTATTATACTGGCCG
TTGCACTCGCACTGCATGCACTGCTATCATACTGATGTTTTTAGTTTTTA
GCATTTTCGAAGTGTCTGAGGTTGCTGCACTGTCTGTACAACAGTACCAG
TAGTGCTGCTGCACTGCTGCACTACTGCACTGCTGAGGCCGCACCTTTCG
GAGTTGCTCTTCGTGTGTGTGGGGTGTCTTCGTCTCTTTCTCTCTCTTCC
AACATCGCCCGCCGACTCCCACCTGGTTGCGCTCCTGTGATGCACGCTAC
ATGCACTCCTGCTGACGTCCAACGTTCGTTCGTGCCCTGTCTCTCTCTCG
GTCGGTATCAGGCTCGATCCGCTGCTGTAGTAGTTATTGTGGTGTCACTT
GTGCGTGCTTACTCTGTTCCGTTGGTGTCGTATAGTACTGAGGTCGAGAC
ACCGAAGCAAACGAGTACTACTGTAGTTTGCGTCCTTGCCAAGCACAGCG
CACACGAGGGCATCGCAAAGGAGCGCGGACCGGGCCGTTCCCATGGCACC
TGCTGCTGCTTGTACTAACGGCTCTTGTTGCCGAGGATGTGTGTGAAAAC
GGTATGGTCGAAAATATAAAAAGTTCGAGATTTGGCCACGCAAGCAGATG
CAGGGCACCCTATATTTTTGGCGCCGTCGGAAATTAGAAACTCGCTTCGC
TCGTAATTATACAACAACAGTACCTACTAGTCGTTCGCCATCGTCAAACA
AGATGAGAGCAACTGCGAGTGGGATATACACAGACAACGACCATGGCGAA
GATGGATCCAGTGCGTGTCTTTTGTTAGTCGAGAGAATTTTTTTAATTTT
TATAGTAGAGGTCGGCGAAACCGTCGAGCACTACCCCCTTCCCCGTTTGG
ACTGAACTTGAATATATACGTGGAACTCCCAAACGTGGAGTCTCAGGGCA
GATTTTGCAAAGTTATCAGGAAGAGGGGCTCTCAGGGTGGGCGAACGGCT
GCTAGCGTGTACCTATAAAGCACACATGTGTGTTGGCCTTTGACAGACCA
ACCGTTAGACCCTACTCATGTCTATTTCTGTATACCCACTCTCTCAAGAA
ATAGGTGACGCAACAAAACCACTCGCCGGGTGCAGGAATAAAAACGCTGA
CAGACAGGTGCACCAGCGCAGAGGGGATCTATGATTCTGATGTGCTGCTT
GCGTGCTTTTGGTTCCAAAGGCATGAAGAGAATGCAAAACGTGCGCGTTC
CCCTCCAACAGACAGGGATCAACCTGAGTAGCTCTGCAAAGACAACCCAT
TGTCAGCAGCAGCAACCGTGGCCTGTGAGACGAGAAAAACAGAGGTAGTA
GTAGTAGTTGTTGCGAAAAAAGCGTCGTCCAGAGTGCAGATAGATGCTGC
AAAATCCAGCATGTTTGTTCATGGAGGTTGGGGCGGTGGCCAAAACTCGT
ATCTCAAGTCACACGTCTCCCCTGGCGCTGAAAGTTGAATCTGACGGGTG
CTGTGTGTGTCAGGTGTCTATTGCAATCGACACTGTTTTGGTGACCGTTG
TACTCACCGGGTTACCGGGAGAGAATCGGCAACAAAATTGCAAGGGTCAT
GCCTTCTATGGGCAGGTGGACATACGGACTTACATAAAGACTTACTTACT
AATCTCTCGGCCTCGGAATACGCTGGGTTGGCATCGGGATAGTCTCCCAA
ATCTACGCCAACAAGTGTAACTAACTGCGCAGGATCTGCGGTGTAATTTT
TCGATTTTTTTTTTGTTATCTTATTTTTGCCGGCTTCAAAGCAGATCAAG
CAGCAGGCTGCTGTGCAATTTGAGATTAATGGCCTGCGTTCATACTATAC
TACTGTGCTGCTGCTGCTGCTGCTGCTGTAGTGCAGGCATTTAGTTTTGC
ACCCTTTCACATCTCAAAGCACACCCGCTCCGAGAGTGCACAGAAACGTA
CTACATGCTGCATGTGGCTGATTTTTGTTTTGCGGAGATCTCCTGCCTGC
TCTAATGCTTTTTAACTAAACTTGTGGGCTATTCGATATAGGCTTCTTTC
CTTTACTATTAATAATATGCGTCGTATGATCGTATGATACTTGATACTAC
TCTACATATTTACGTCTATTTTGTACACTTTTACCTTCTGCTGGTTGCCG
ACAAATTTGCGAACTAGCAGTATCGCTGGACAGTGATGAGCTGTGTGATA
CCTGTTGTTCGAGTTGAACTGAGCCCGTTCATAATGTCGTCTTCTGTGAG
TGATGGTAGCTGTCTGTACTGCCTCTATATGCTTGGCGCTGACGTTCTCG
AGCGTCCGTGTAATGACAGCGTCCATCCTTTAGAACATGGGCATGCATGC
TGAGTCGAGGTTGCTTGCCTGGGGCAGTTAGCTGTTGGCATTTGCAAATC
GGCAGTTGCACTAAACAAGTCTTGGATCTCGGTCTTTCCGCTTCACATTT
TTTTCTATTTTTTCTATTTTTTCGATATTTGATATTTTATACTACTACAG
TACTGTAGGTTACTACTTTTCTTCTACTCTACCATAGCCGCCCGAGGGCA
TACATGCATACATACATACATACATACATACATACATCCCACTACCATAA
AGCCCACTAGACATGTAAATCCCCAATCTACTTTTGAAGCGTTTCACATG
TCCCGAGCATCACCAATAATATCAGTAGCATATACGAGCTTTCTTGGCAC
CCCTACATACCAGATGAAGACTGGAATATATTTAGGGTTTTGTATGGTGT
GTTTTTTCTTTTTTCTTGAACTTTTTTTTGATTTGTTCACGTCATCCAAA
CGCGCGGGGAAGCCGCGCTGGGTTCGATCCTTATCCTTAGTGTGGCTTGG
GGTTAGGGTTAGGGTTAGAGTTGGGGTTGGGTTGGGTTGGGTCGACGCTC
AAAGCTGATTTTCATAAGAAAAAGGCACCGAACAGCATAAAACACCTTAC
GAAACCCTAATATATTCCAGTCTTAATCTGGTATGTTAGGGGTGCCAACC
TCGTAAAGAGCCCTCAATAAATATAGAAAGTATAGTACCGTACTGTACTA
AGCGAGGCATGTACCAGGGGAGGGGGGAGGGAAGACACTTTTGCGACCTT
GCTCAGACAGGCGCGTTGACGCGATAAGTACGAGAAGAGCTCCTGTAAGC
TGGACTGGGGAATTCAGGTGATGCGAAAAGGTCTTTTTATCATAATGGTC
GTCGTTTAGAAGACTTCTCGAAGGCACCGGCATTTTATTTTTTAGTTGGT
TCCTTTCTCAGCAGCAAGGTGGCGACTCGGCACTGACTTCAATCCTACGG
GTACCTGACTTGTACCTTTTCCCCACGTACCCCGATAGCGGTGCTGCTGT
AACATACATATGCTGATGTCTCTTTGACGTCACTGATATCATGCCGTTGG
ATCGTTCCTCCCGTTTCGACGCGCGTTCCCTGTAATATTCCGTTAGCCTG
AAGGGTCAGCTCGTATCTGCGCGAGAAATCATCAAGGGCGTGGCGAGGGG
CGGTGTTGCTGTTGACGGGGGCCACAAGCGGCCGAGGTTGGGTGCTGGCG
GTGTCCACGGGGAGGAGGCTGTCGTCAGGTATGATAGGTGGTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9839:2873..10566-

>mRNA_D-dudresnayi_contig9839.28647.1 ID=mRNA_D-dudresnayi_contig9839.28647.1|Name=mRNA_D-dudresnayi_contig9839.28647.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at D-dudresnayi_contig9839:2873..10566- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGTTTCTTTGACGGTGATCTACATGGTGACGTGTACGGAGATGTCGA
CGAGGTTATGATGCCTAGAAATATCGATGAGAATCCCGCTTTGCGAGAGA
AGCGGCTGAGAGAGGAGAACGTCACATGAGTTTCTTTGACGGTGATCTAC
ATGGTGACGTGTACGGAGATGTCGACGAGGTTATGATGCCTAGAAATATC
GATGAGAATCCCGCTTTGCGAGAGAAGCGGCTGAGAGAGGAGAACGTCAC
CCTGAAGGGTCAGCTCGTATCTGCGCGAGAAATCATCAAGGGCGTGGCGA
GGGGCGGTGTTGCTGTTGACGGGGGCCACAAGCGGCCGAGGTTGGGTGCT
GGCGGTGTCCACGGGGAGGAGGCTGTCGTCAGGTATGATAGGTGGTAGCC
TGAAGGGTCAGCTCGTATCTGCGCGAGAAATCATCAAGGGCGTGGCGAGG
GGCGGTGTTGCTGTTGACGGGGGCCACAAGCGGCCGAGGTTGGGTGCTGG
CGGTGTCCACGGGGAGGAGGCTGTCGTCAGGTATGATAGGTGGTAG
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